SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene716

Length: 2563 nt

UniGene Fasta

>sp_v3.0_unigene716
CATACTACTCAGCTGGTGCTCCTATTTGCTGGACTGAATTTGGAGTCTAAAATAGAATACTTCAAACCACTATTTACTGCCAGTCACCTAGCACAAAATCTCCCTCCCTTGGCCCCCAATTGGGAAGAAGGGGATTGAAGTTTCAAAATGGAAGAAGCCTGCCTGGTGAAAGATTGTTGATGATATGACCTTTTTGCCATCATGAATCATTCTATCATTGACCCATATCAGGGAGACTTCCCTGAAGTTATAGAAGAGTTCCTGGAACAAGGGGTAGCCAGGTGCATTGCATTCAATAGCAGGGGCACACTTCTTGCTGCTGGCTGTACAGACGGAACTTGTGTTATATGGGACTTTGAAACCAGAGGAGTTGCTAAGGAACTTCGTGACAAGGACTATGGTGCAGCTATTACAAGCGTGTGTTGGTCCAGGCGTGGTTGTCAATTACTGACATCTGCTACAGATAAATCTTTGACACTCTGGGATGTTGCTGAAGGACGAAAGGTTGCACGTATTACACTCCAGCAGACTGCCTTATATGCTCGTCTTCATCCTGGATCACACAATCCATCTTTGGGTTTGGCTTGTCCCATGGCCAGTGCACCAATCCTTGTGGACTTCAATTCAAGCAACCAGTATGTACTTCCTGTTACAGCACATTCTGCTGGTACAGAACAAGCTGCCCATCCTCGGAGTAAATTCTCTGATGGAAGTGCAGCTCTTAAATCTGCTGCTGCAAGTTTTAATAAGAGAGGTGATTTAATTTACGTTGGGAATTCGAAAGGGGATATACTGATTATTGATACGGAAACAAGAAAGGTACAAGCAGTATTTCAGGTTCCTGGGAATGGACTAATTAGGCAACTTGTTTTTAGCAATTGTGGCAAGTATTTGCTTTCTAATTCGGGGGATCGCACAATTCGAGTTTTTGAGAATTGTCTACCTCAAGATAAAGCAGCTCGTGCTTTGGAAGATTTAGTCAATGCTTCTGGTGACAGTGCAGTGACTGAAAACATTAAGCTCGTGGGATCTCAATGCTTGAAGCTTTCAAAGGAATTCCAGGATGCTGTTAACCGTCTTCCCTGGAAGGCTGCATGCTTTAGTGGTGACAGTGAGTGGGTTGTAGGCGCACCTGCTAGCAAAGGGGAACACAAGATATGTATATGGGACAGATCTGGGCAGCTTGTCAAAATATTAGAAGGGCCAAAAGAGGGTTTGACAGATTTATCTTGGCATCCTACTCGCCCAGTGGTGGTTTCAGTGGCAATGCCAGGGGTAATTTACATATGGGCCAAAGACTATACAGAAAATTGGAGTGCGTTTGCTCCAGATTTCAAGGAGCTAGAGGAAAATGAGGAATATGTTGAGAGAGAAGATGAATTTGATATGATGCCTGACACTGAGAAGGTAAAAACTGCACATGTTGATGAAGATGAAGAGGTTGACATCATGACAACAGAAAACTTTTTAGATAGTGATTCGGATGAATCTGGTGAAAGGCTATACCATTTACCGACAATTCCATTGCCCGATAGTCCTAAACAGCAGGAACAGTCTTCAGCAAGTCCCTCTAAACCTGAAAGTAGCACTCCTCCTCAGTCAGACAGGTCTCCTGTTCTAGATGAAGAGAAAGCTAATAGAACACCAGAGAATAGTGCTGCTCAAGCTCCAGATTCTCCTTTAGAGGAGCCGAGTCTAAATGGGCGGGCCAAGCGAAAACGCAAGTTATCAGAGAAAGGAGCTGAGTTGCAGGCTGAAAAGGGACGTAGAACTTTTCAGAAGCATGGCTCTACGGCAAAGCGGAAGACTGGAGTTAATTTCATGAACACAAATAAGGTTGATGTGGTTCAAGGTGGATTGTTGGACTCTAGTTCAAATCTAAAGTCAGGCTCCAAAGCAGATGCGGGGGAGCCTTTTGGAACTGGGGACGAGCCTTTCAGAAATGGGGACGAGGCTCCCAGCTTATCTCAAAAGGGTGGCAAGGACTTTCAGAGGTTTAAGATTTTTCATCCGTGTAACTACACTCGTGACTCATCAAGCTCCCCGGAAAGTGAGTCAAATGGCTTTGAAAATGGAAGATATCTATAAAATTTTGTACATGTATTCGACCACGATTTTCTTTTGCCTCGGAATATCTGTAGAACATAAAATGGAAAATCCCAATTTTATGAAATCTTTTCTGTTATCTGGTTCCATAGACGAATTCTTAGATAGGGCTAGGAAACATCATTATTTGCTTGCAACTTTCTCAAGTTATTTGACAGCCTATTTTTGAAGCTGAGGCCAATTTTTTATAGCGTCCTATACAAGGCATGTGTCTGGGATGCTGTTTATTGGGTTCTTTGTCTCGATTGAATCAGGCACCATTAAGTGCATGCAGTGTAAATATAAATTTATATTTATCACCTCAAGAAAGCAATGCAAACTTTCACCGTTGTCTTCAGTGAAGCAAGCATATCGCCATTTAATGGATGCCATACATCTTTAACAGGGAATGCAATTTGTTCTTCCTGTCATTTATGTAACTAAAGAGGTAAAAACAGTAAAAGGAATTTGCTTTCCC

Ace file of the UniGene sp_v3.0_unigene716

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SA71_RICCO	-	-	0.0	55%
FL-Next	tr=Nucleotide binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	58%
Sma3	Retinoblastoma-binding protein-like	-	-	1.945e-09	-

Source	Gene names
Sma3	AT3G21060; At3g21060; GSVIVT00019063001; LOC_Os03g10990; MtrDRAFT_AC147431g31v2; OSJNBa0014O06.12; Os03g0207900; OsI_10465; OsJ_09856; PHYPADRAFT_57600; POPTRDRAFT_752963; POPTRDRAFT_783647; RCOM_0862780; SWDA1501; VITISV_003927;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G21060.1	Transducin/WD40 repeat-like superfamily protein chr3:7377822-7379942 FORWARD LENGTH=547	54%
RefSeq	Arabidopsis thaliana	NP_188743.3	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002329452.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SA71

Fln msg: your sequence is longer than subject: 629 - 551

Fln protein: MNHSIIDPYQGDFPEVIEEFLEQGVARCIAFNSRGTLLAAGCTDGTCVIWDFETRGVAKELRDKDYGAAITSVCWSRRGCQLLTSATDKSLTLWDVAEGRKVARITLQQTALYARLHPGSHNPSLGLACPMASAPILVDFNSSNQYVLPVTAHSAGTEQAAHPRSKFSDGSAALKSAAASFNKRGDLIYVGNSKGDILIIDTETRKVQAVFQVPGNGLIRQLVFSNCGKYLLSNSGDRTIRVFENCLPQDKAARALEDLVNASGDSAVTENIKLVGSQCLKLSKEFQDAVNRLPWKAACFSGDSEWVVGAPASKGEHKICIWDRSGQLVKILEGPKEGLTDLSWHPTRPVVVSVAMPGVIYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDMMPDTEKVKTAHVDEDEEVDIMTTENFLDSDSDESGERLYHLPTIPLPDSPKQQEQSSASPSKPESSTPPQSDRSPVLDEEKANRTPENSAAQAPDSPLEEPSLNGRAKRKRKLSEKGAELQAEKGRRTFQKHGSTAKRKTGVNFMNTNKVDVVQGGLLDSSSNLKSGSKADAGEPFGTGDEPFRNGDEAPSLSQKGGKDFQRFKIFHPCNYTRDSSSSPESESNGFENGRYL*

Protein Length: 630

Fln nts: CATACTACTCAGCTGGTGCTCCTATTTGCTGGACTGAATTTGGAGTCTAAAATAGAATACTTCAAACCACTATTTACTGCCAGTCACCTAGCACAAAATCTCCCTCCCTTGGCCCCCAATTGGGAAGAAGGGGATTGAAGTTTCAAAATGGAAGAAGCCTGCCTGGTGAAAGATTGTTGATGATATGACCTTTTTGCCATC_-_ATGAATCATTCTATCATTGACCCATATCAGGGAGACTTCCCTGAAGTTATAGAAGAGTTCCTGGAACAAGGGGTAGCCAGGTGCATTGCATTCAATAGCAGGGGCACACTTCTTGCTGCTGGCTGTACAGACGGAACTTGTGTTATATGGGACTTTGAAACCAGAGGAGTTGCTAAGGAACTTCGTGACAAGGACTATGGTGCAGCTATTACAAGCGTGTGTTGGTCCAGGCGTGGTTGTCAATTACTGACATCTGCTACAGATAAATCTTTGACACTCTGGGATGTTGCTGAAGGACGAAAGGTTGCACGTATTACACTCCAGCAGACTGCCTTATATGCTCGTCTTCATCCTGGATCACACAATCCATCTTTGGGTTTGGCTTGTCCCATGGCCAGTGCACCAATCCTTGTGGACTTCAATTCAAGCAACCAGTATGTACTTCCTGTTACAGCACATTCTGCTGGTACAGAACAAGCTGCCCATCCTCGGAGTAAATTCTCTGATGGAAGTGCAGCTCTTAAATCTGCTGCTGCAAGTTTTAATAAGAGAGGTGATTTAATTTACGTTGGGAATTCGAAAGGGGATATACTGATTATTGATACGGAAACAAGAAAGGTACAAGCAGTATTTCAGGTTCCTGGGAATGGACTAATTAGGCAACTTGTTTTTAGCAATTGTGGCAAGTATTTGCTTTCTAATTCGGGGGATCGCACAATTCGAGTTTTTGAGAATTGTCTACCTCAAGATAAAGCAGCTCGTGCTTTGGAAGATTTAGTCAATGCTTCTGGTGACAGTGCAGTGACTGAAAACATTAAGCTCGTGGGATCTCAATGCTTGAAGCTTTCAAAGGAATTCCAGGATGCTGTTAACCGTCTTCCCTGGAAGGCTGCATGCTTTAGTGGTGACAGTGAGTGGGTTGTAGGCGCACCTGCTAGCAAAGGGGAACACAAGATATGTATATGGGACAGATCTGGGCAGCTTGTCAAAATATTAGAAGGGCCAAAAGAGGGTTTGACAGATTTATCTTGGCATCCTACTCGCCCAGTGGTGGTTTCAGTGGCAATGCCAGGGGTAATTTACATATGGGCCAAAGACTATACAGAAAATTGGAGTGCGTTTGCTCCAGATTTCAAGGAGCTAGAGGAAAATGAGGAATATGTTGAGAGAGAAGATGAATTTGATATGATGCCTGACACTGAGAAGGTAAAAACTGCACATGTTGATGAAGATGAAGAGGTTGACATCATGACAACAGAAAACTTTTTAGATAGTGATTCGGATGAATCTGGTGAAAGGCTATACCATTTACCGACAATTCCATTGCCCGATAGTCCTAAACAGCAGGAACAGTCTTCAGCAAGTCCCTCTAAACCTGAAAGTAGCACTCCTCCTCAGTCAGACAGGTCTCCTGTTCTAGATGAAGAGAAAGCTAATAGAACACCAGAGAATAGTGCTGCTCAAGCTCCAGATTCTCCTTTAGAGGAGCCGAGTCTAAATGGGCGGGCCAAGCGAAAACGCAAGTTATCAGAGAAAGGAGCTGAGTTGCAGGCTGAAAAGGGACGTAGAACTTTTCAGAAGCATGGCTCTACGGCAAAGCGGAAGACTGGAGTTAATTTCATGAACACAAATAAGGTTGATGTGGTTCAAGGTGGATTGTTGGACTCTAGTTCAAATCTAAAGTCAGGCTCCAAAGCAGATGCGGGGGAGCCTTTTGGAACTGGGGACGAGCCTTTCAGAAATGGGGACGAGGCTCCCAGCTTATCTCAAAAGGGTGGCAAGGACTTTCAGAGGTTTAAGATTTTTCATCCGTGTAACTACACTCGTGACTCATCAAGCTCCCCGGAAAGTGAGTCAAATGGCTTTGAAAATGGAAGATATCTATAA___AATTTTGTACATGTATTCGACCACGATTTTCTTTTGCCTCGGAATATCTGTAGAACATAAAATGGAAAATCCCAATTTTATGAAATCTTTTCTGTTATCTGGTTCCATAGACGAATTCTTAGATAGGGCTAGGAAACATCATTATTTGCTTGCAACTTTCTCAAGTTATTTGACAGCCTATTTTTGAAGCTGAGGCCAATTTTTTATAGCGTCCTATACAAGGCATGTGTCTGGGATGCTGTTTATTGGGTTCTTTGTCTCGATTGAATCAGGCACCATTAAGTGCATGCAGTGTAAATATAAATTTATATTTATCACCTCAAGAAAGCAATGCAAACTTTCACCGTTGTCTTCAGTGAAGCAAGCATATCGCCATTTAATGGATGCCATACATCTTTAACAGGGAATGCAATTTGTTCTTCCTGTCATTTATGTAACTAAAGAGGTAAAAACAGTAAAAGGAATTTGCTTTCCC

Fln Alignment:

Contig716___MNHSIIDPYQGDFPEVIEEFLEQGVARCIAFNSRGTLLAAGCTDGTCVIWDFETRGVAKELRDKDYGAAITSVCWSRRGCQLLTSATDKSLTLWDVAEGRKVARITLQQTALYARLHPGSHNPSLGLACPMASAPILVDFNSSNQYVLPVTAHSAGTEQAAHPRSKFSDGSAALKSAAASFNKRGDLIYVGNSKGDILIIDTETRKVQAVFQVPGNGLIRQLVFSNCGKYLLSNSGDRTIRVFENCLPQDKAARALEDLVNASGDSAVTENIKLVGSQCLKLSKEFQDAVNRLPWKAACFSGDSEWVVGAPASKGEHKICIWDRSGQLVKILEGPKEGLTDLSWHPTRPVVVSVAMPGVIYIWAKDYTENWSAFAPDFKXXXXXXXXXXXXXXFDMMPDTEKVKTAHVDEDEEVDIMTTENFLDSDSDESGERLYHLPTIPLPDXXXXXXXXXXXXXXXXXXXXXXXDRSPVLDEEKANRTPENSAAQAPDSPLEEPSLNGRAKRKRKLSEKGAELQAEKGRRTFQKHGSTAK
B9SA71_____________MNASIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKDCIAAITSVCWSKYGHRILVSAADKSLTLWDVVSGERIARTILQQTPLLARLHPGSSAPSLCLACSLSSAPMIVDLNTGSTTVLPVMVPDMGNGHAPPSRNKSSDANPPFTPTAACFNKHGDLVYVGNSKGEVLIIDHKSIQIYAMISIPGGAVIKNIVFSRNGQYLLTNSNDRTIRIYENLLPQKDGCTALADMSRTVDEVDVVEKMKTVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIGGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIVVSVSLTGLVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLVPETEKVKESDVNEDEEVDIVTVEKDAFSDSDMSQEELCFLPAVPCPD---ASEQQDKCVGSSSKLMDSNHSGSPLSEGAGQNGMAMNHAS----SPLEEDTGGMRMKRKRKPSEKGLELQAEKVRKPLKPLKSSGR

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1589		25		75	1.0
1621		25		75	1.0
1666		87	12		0.992554
1742	87			12	0.992554
1749	12		87		0.992554
1760		12		87	0.992554
1786	87		12		0.992554
1793		75	25		1.0
1866	14			85	0.993533
2190	88	11			1.0
2275	10			89	0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain