SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene700

Length: 3331 nt

UniGene Fasta

>sp_v3.0_unigene700
GAGAAAGGTTTCAATAAAAAAAGGTTGGAAGGACTGGACAAAGGGGCCCCAAAGCAGCTGAAGCTTAAGACCAGGAGTGTCAATCCAGTCAATACCATTTGTTACATACAGATTCTGGGGACTGGGATGGATACGCAAGATACATCCCCATCCGTTCTGCTGTTTTTTGATCAACAGCGCTTCATATTCAATGCTGGAGAGGGGCTGCAACGCTTCTCTGCTGAACACAAATTCAAGCTGTCAAGATTAGATCACATATTTCTTACACGGGTTTGCTCAGAAACTGCAGGTGGCATTCCAGGTCTTCTCCTGACGATGGCTGGCATAGGGGATGATGGAATGACAGTTAACATCTGGGGTCCATCAGATTTAGAATTTTTAACTGGTGCAATGCGGTCATTTATTCCAAATTCTGCTGTTGTTCACACCAATAGTTTTGGTCCAGGGCATGTCTCGGAAGAGAGGGCAGTGAATCACAATTCAAATGGAAGCATATCAACAAACTCAATTATACTTGTTAAAGATGAGATTGTGCAGATATCTGCTGTTATTCTATTTCCTAATGCTGTAGGAAGCTGCGGGGAACTAAAGAACAGTATACAGATTTCCAAGGAGGTTGATAGTAAAAATGAAGAGGAAAGTGCAAATTTATCTCAAAAGCGTCCTCGTTTAGGATTAGATAGGTTATCTGAAACTGAAGAAACTAACTCGGGAATCCAGGCGAGATATAAGCCTGGTGATATTGCTGTAGTATACATCTGTGAATTGCCTGATATCAAAGGAAAATTTGATCCCTCAAAGGCTCAAGCACTGGGGTTAAAGCCAGGGCCTAAGTATCGGGAGCTGCAGCTTGGAAAGTCTGTGATGTCAGACAATGGGAATGGAATGGTACATCCAGGTGATGTGATGGGGCCATCATCCCCTGGTCCTATTATCCTCCTCGTTGATTGCCCTTCTATTTCACATTTGCCAGATTTGCTCTCTGCACCTGCTTTTAGGAATTATTTTCCAGGCGCTGACAATGCATCTGAGAACCTTCAGAAACAAGTGAATTGTGTTGTTCATCTCACGCCTGCTTCTGTCACTAAATATCCAGAGTATGTGCAATGGATGTCAAAATTTGGGGATGCTGAACACATTATGGCTGGACATGAAGAAAAGAACATGGAATTTCCAATTCTAAAGTCCAGTGCAAGAATTTCAACACGGCTTAATTTCCTTTGCCCACAACTTTTCCCTGTTCCTGGTTTTCGTTCTCTCAATGTTGCAAACAAGTCAGAAGGGGCTTCTGGTCAAATGAACCAGGTTCATGGTATCATTCCTGCTGCTAACTTACTGAAGTTTCGCTTACGCCCTTATGCTCAACTTGGTTTGGATCAATCCTCCATCCCCAGTTTGCCCACTGCATCAGATATCATTGATGAACTGATTTCTGAGATTCCAGAGATTGTGGATGCTTCGAAACAGATTGCCCAGCTGTGGACTCCAGTGCTGAAGGAGCAATGTGAAAAGCCTCAGCTGATTGAACCTCCCAGTTCTTCAACTATGTTGGAAGAGCCTTGGCTACAGAAAGGGGTGTGCGAATCTGAATTAGAATCTGAAAAGAAAAGCTTTTATGACTCCTCAGTGGGCAACCAATTCAGATCTCCAAATGAATTAGAATGTTGTAATAGTAGTGATGAAATTCCTGTGTGCTTGGAGGGCATAAACAGAGATGTGATGGAGATGGTCTTTTTAGGTACAGGCTCCTCTCAGCCATCAAAGTATCGTAATGTCAGTGCAATATTTATTAATCTTTTCTCCCACGGTGGTATACTTCTAGACTGTGGAGAGGGAACTTTGGCACAGCTCAAAAGGAGGTTTGGAGTGAGAGGTGCTGATGATGTCATCAAATCATTGAAGTTTATATGGATATCGCATATTCATGCTGATCACCACACAGGTCTTGCAAGGATACTTTCTCTGCGAAAGCAGTTATTAAAGAATGAACCTCATGAATCTTTGCTGGTCATTGGACCACGGCCACTAAAGAGATTCCTGGATGCATACTCAATGCTGGAGGATTTAGGCATGCAGTTCATGGATTGCAGACAAACAGTGAAGGAATCAATGGATGCTTATGAACAAATATCTCATGATACAAAAGATCAGATGAGAAGTAATAAACAACATGTTAAGGATAATGTTGATGGTTCAGGACAGCTATTTAAGAAAGAGATGTCTGTTGGTAGTAATCTAGTCCGGTTTAAGCCGGAAACCAAACTGGAAGCATTAAGTGCCGGGCAGAATCGAATGCATAGCTATTGGCAACGACCTGATGGTTTTGTTTTGGATATCACAGGACTGCAGAGGTTAAAGAAAGCTTTATCTGAAGCTGGGCTAGAGATGTTGACCAGTGTGCCTGTTGTGCATTGCCCACAAGCATTTGGTGTTGTCTTGCAAGCTGCAAGTAGAAATAATAATGGCAATAAAACAGTGCCAGGTTGGAAGCTTGTATATTCTGGTGATACAAGGCCTTGCCAGGCTCTCATAGATGCTGCTTGCGGGGCAACTGTTCTGATACATGAGGCTACTTTTGATGATAGCATGCCTGAAGAAGCAGTTTCAAAAAATCATAGTTTGACTAAGGAAGCCATTGAGGTGGGAGCTTCTGCTGGAGCATACAGGATTATTTTGACACACTTTAGCCAGCGTTACCCCAAAATCCCCGTGTTTGATGAAAGCTATATGGACCGAACATGCATTGCTTTTGATTTGATGACTGTGAACCTGGCAGACTTGCCTTTTGTACCAAAAGTAAATCCTTTTTTGAAACTTCTCTTCAAAAATGAGATGGCAGCTGAGGAAGGATTTGAAAGTGAAAAGACAATTGAGGATGCCAACGTTGAGTTATAAAAACATCATTCTAAAGTTATTCCCTTCTCATACTATTAAATGCAGTTTCTCCTTTTCTTCCTTGCTCACCAATTTTTCTGTGCAGTCAAGAAAATAAACCTTATTGTGGTTTGGAATATGTAATCAAATGCCTTCACAGGTAACTTCTGCGACCATCCAAAGCCTAAGTATTCACATTGAAATTTCTAAGCATGTTAGAAATAGTAGCTGGGAAAATCTAAACCAGCTACATTACTGGATACAATCTTACCCTAAAGAATGACAGCTAGGTATACTCCAGGTATGACCAACCCTTCTCAGGTTCTTGGTTTGTTTACTTATCTACAAGTCCAGAGTAGTGGATTATATGATTATAGCTGCATAAGCTGAGAAAATGTCATTGGTTAATGTGAAGTTATGTAAGTAAAATTATTGAAATAAATGGACAAGTTATTTC

Ace file of the UniGene sp_v3.0_unigene700

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tRNAse Z4 [Arabidopsis thaliana] gb\|AEE75791.1\| tRNAse Z4 [Arabidopsis thaliana]	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	56%

Source	Gene names
Sma3	At1g52160; At3g16260/MYA6_19; C117; CHLREDRAFT_152009; F9I5.1; GSVIVT00034348001; MICPUCDRAFT_54013; MICPUN_81940; OSTLU_37507; Os01g0232300; OsI_01027; OsJ_00998; PHYPADRAFT_216224; POPTRDRAFT_829561; RCOM_1492180; TRZ2; VITISV_011432;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	VHS	IPR002014	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G16260.1	TRZ4 tRNAse Z4 chr3:5509397-5513118 FORWARD LENGTH=942	51%
RefSeq	Arabidopsis thaliana	NP_188247.2	tRNAse Z4 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002298234.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: F6HYC8

Fln msg: atg_distance in limit (1-15): atg_distance = 10, W2: There is no M at the beginning, your sequence is longer than subject: 965 - 918

Fln protein: EKGFNKKRLEGLDKGAPKQLKLKTRSVNPVNTICYIQILGTGMDTQDTSPSVLLFFDQQRFIFNAGEGLQRFSAEHKFKLSRLDHIFLTRVCSETAGGIPGLLLTMAGIGDDGMTVNIWGPSDLEFLTGAMRSFIPNSAVVHTNSFGPGHVSEERAVNHNSNGSISTNSIILVKDEIVQISAVILFPNAVGSCGELKNSIQISKEVDSKNEEESANLSQKRPRLGLDRLSETEETNSGIQARYKPGDIAVVYICELPDIKGKFDPSKAQALGLKPGPKYRELQLGKSVMSDNGNGMVHPGDVMGPSSPGPIILLVDCPSISHLPDLLSAPAFRNYFPGADNASENLQKQVNCVVHLTPASVTKYPEYVQWMSKFGDAEHIMAGHEEKNMEFPILKSSARISTRLNFLCPQLFPVPGFRSLNVANKSEGASGQMNQVHGIIPAANLLKFRLRPYAQLGLDQSSIPSLPTASDIIDELISEIPEIVDASKQIAQLWTPVLKEQCEKPQLIEPPSSSTMLEEPWLQKGVCESELESEKKSFYDSSVGNQFRSPNELECCNSSDEIPVCLEGINRDVMEMVFLGTGSSQPSKYRNVSAIFINLFSHGGILLDCGEGTLAQLKRRFGVRGADDVIKSLKFIWISHIHADHHTGLARILSLRKQLLKNEPHESLLVIGPRPLKRFLDAYSMLEDLGMQFMDCRQTVKESMDAYEQISHDTKDQMRSNKQHVKDNVDGSGQLFKKEMSVGSNLVRFKPETKLEALSAGQNRMHSYWQRPDGFVLDITGLQRLKKALSEAGLEMLTSVPVVHCPQAFGVVLQAASRNNNGNKTVPGWKLVYSGDTRPCQALIDAACGATVLIHEATFDDSMPEEAVSKNHSLTKEAIEVGASAGAYRIILTHFSQRYPKIPVFDESYMDRTCIAFDLMTVNLADLPFVPKVNPFLKLLFKNEMAAEEGFESEKTIEDANVEL*

Protein Length: 966

Fln nts: GAGAAAGGTTTCAATAAAAAAAGGTTGGAAGGACTGGACAAAGGGGCCCCAAAGCAGCTGAAGCTTAAGACCAGGAGTGTCAATCCAGTCAATACCATTTGTTACATACAGATTCTGGGGACTGGGATGGATACGCAAGATACATCCCCATCCGTTCTGCTGTTTTTTGATCAACAGCGCTTCATATTCAATGCTGGAGAGGGGCTGCAACGCTTCTCTGCTGAACACAAATTCAAGCTGTCAAGATTAGATCACATATTTCTTACACGGGTTTGCTCAGAAACTGCAGGTGGCATTCCAGGTCTTCTCCTGACGATGGCTGGCATAGGGGATGATGGAATGACAGTTAACATCTGGGGTCCATCAGATTTAGAATTTTTAACTGGTGCAATGCGGTCATTTATTCCAAATTCTGCTGTTGTTCACACCAATAGTTTTGGTCCAGGGCATGTCTCGGAAGAGAGGGCAGTGAATCACAATTCAAATGGAAGCATATCAACAAACTCAATTATACTTGTTAAAGATGAGATTGTGCAGATATCTGCTGTTATTCTATTTCCTAATGCTGTAGGAAGCTGCGGGGAACTAAAGAACAGTATACAGATTTCCAAGGAGGTTGATAGTAAAAATGAAGAGGAAAGTGCAAATTTATCTCAAAAGCGTCCTCGTTTAGGATTAGATAGGTTATCTGAAACTGAAGAAACTAACTCGGGAATCCAGGCGAGATATAAGCCTGGTGATATTGCTGTAGTATACATCTGTGAATTGCCTGATATCAAAGGAAAATTTGATCCCTCAAAGGCTCAAGCACTGGGGTTAAAGCCAGGGCCTAAGTATCGGGAGCTGCAGCTTGGAAAGTCTGTGATGTCAGACAATGGGAATGGAATGGTACATCCAGGTGATGTGATGGGGCCATCATCCCCTGGTCCTATTATCCTCCTCGTTGATTGCCCTTCTATTTCACATTTGCCAGATTTGCTCTCTGCACCTGCTTTTAGGAATTATTTTCCAGGCGCTGACAATGCATCTGAGAACCTTCAGAAACAAGTGAATTGTGTTGTTCATCTCACGCCTGCTTCTGTCACTAAATATCCAGAGTATGTGCAATGGATGTCAAAATTTGGGGATGCTGAACACATTATGGCTGGACATGAAGAAAAGAACATGGAATTTCCAATTCTAAAGTCCAGTGCAAGAATTTCAACACGGCTTAATTTCCTTTGCCCACAACTTTTCCCTGTTCCTGGTTTTCGTTCTCTCAATGTTGCAAACAAGTCAGAAGGGGCTTCTGGTCAAATGAACCAGGTTCATGGTATCATTCCTGCTGCTAACTTACTGAAGTTTCGCTTACGCCCTTATGCTCAACTTGGTTTGGATCAATCCTCCATCCCCAGTTTGCCCACTGCATCAGATATCATTGATGAACTGATTTCTGAGATTCCAGAGATTGTGGATGCTTCGAAACAGATTGCCCAGCTGTGGACTCCAGTGCTGAAGGAGCAATGTGAAAAGCCTCAGCTGATTGAACCTCCCAGTTCTTCAACTATGTTGGAAGAGCCTTGGCTACAGAAAGGGGTGTGCGAATCTGAATTAGAATCTGAAAAGAAAAGCTTTTATGACTCCTCAGTGGGCAACCAATTCAGATCTCCAAATGAATTAGAATGTTGTAATAGTAGTGATGAAATTCCTGTGTGCTTGGAGGGCATAAACAGAGATGTGATGGAGATGGTCTTTTTAGGTACAGGCTCCTCTCAGCCATCAAAGTATCGTAATGTCAGTGCAATATTTATTAATCTTTTCTCCCACGGTGGTATACTTCTAGACTGTGGAGAGGGAACTTTGGCACAGCTCAAAAGGAGGTTTGGAGTGAGAGGTGCTGATGATGTCATCAAATCATTGAAGTTTATATGGATATCGCATATTCATGCTGATCACCACACAGGTCTTGCAAGGATACTTTCTCTGCGAAAGCAGTTATTAAAGAATGAACCTCATGAATCTTTGCTGGTCATTGGACCACGGCCACTAAAGAGATTCCTGGATGCATACTCAATGCTGGAGGATTTAGGCATGCAGTTCATGGATTGCAGACAAACAGTGAAGGAATCAATGGATGCTTATGAACAAATATCTCATGATACAAAAGATCAGATGAGAAGTAATAAACAACATGTTAAGGATAATGTTGATGGTTCAGGACAGCTATTTAAGAAAGAGATGTCTGTTGGTAGTAATCTAGTCCGGTTTAAGCCGGAAACCAAACTGGAAGCATTAAGTGCCGGGCAGAATCGAATGCATAGCTATTGGCAACGACCTGATGGTTTTGTTTTGGATATCACAGGACTGCAGAGGTTAAAGAAAGCTTTATCTGAAGCTGGGCTAGAGATGTTGACCAGTGTGCCTGTTGTGCATTGCCCACAAGCATTTGGTGTTGTCTTGCAAGCTGCAAGTAGAAATAATAATGGCAATAAAACAGTGCCAGGTTGGAAGCTTGTATATTCTGGTGATACAAGGCCTTGCCAGGCTCTCATAGATGCTGCTTGCGGGGCAACTGTTCTGATACATGAGGCTACTTTTGATGATAGCATGCCTGAAGAAGCAGTTTCAAAAAATCATAGTTTGACTAAGGAAGCCATTGAGGTGGGAGCTTCTGCTGGAGCATACAGGATTATTTTGACACACTTTAGCCAGCGTTACCCCAAAATCCCCGTGTTTGATGAAAGCTATATGGACCGAACATGCATTGCTTTTGATTTGATGACTGTGAACCTGGCAGACTTGCCTTTTGTACCAAAAGTAAATCCTTTTTTGAAACTTCTCTTCAAAAATGAGATGGCAGCTGAGGAAGGATTTGAAAGTGAAAAGACAATTGAGGATGCCAACGTTGAGTTATAA___AAACATCATTCTAAAGTTATTCCCTTCTCATACTATTAAATGCAGTTTCTCCTTTTCTTCCTTGCTCACCAATTTTTCTGTGCAGTCAAGAAAATAAACCTTATTGTGGTTTGGAATATGTAATCAAATGCCTTCACAGGTAACTTCTGCGACCATCCAAAGCCTAAGTATTCACATTGAAATTTCTAAGCATGTTAGAAATAGTAGCTGGGAAAATCTAAACCAGCTACATTACTGGATACAATCTTACCCTAAAGAATGACAGCTAGGTATACTCCAGGTATGACCAACCCTTCTCAGGTTCTTGGTTTGTTTACTTATCTACAAGTCCAGAGTAGTGGATTATATGATTATAGCTGCATAAGCTGAGAAAATGTCATTGGTTAATGTGAAGTTATGTAAGTAAAATTATTGAAATAAATGGACAAGTTATTTC

Fln Alignment:

Contig700___GFNKKRLEGLDKG-APKQLKLKTRSVNPVNTICYIQILGTGMDTQDTSPSVLLFFDQQRFIFNAGEGLQRFSAEHKFKLSRLDHIFLTRVCSETAGGIPGLLLTMAGIGDDGMTVNIWGPSDLEFLTGAMRSFIPNSAVVHTNSFGPGHVSEERAVXXXXXXXXXXXXXXLVKDEIVQISAVILFPNAVGSCGELKNSIQISKEVDSKNEEESANLSQKRPRLGLDRLSETEETNSGIQARYKPGDIAVVYICELPDIKGKFDPSKAQALGLKPGPKYRELQLGKSVMSDNGNGMVHPGDVMGPSSPGPIILLVDCPSISHLPDLLSAPAFRNYFPGADNASENLQKQVNCVVHLTPASVTKYPEYVQWMSKFGDAEHIMAGHEEKNMEFPILKSSARISTRLNFLCPQLFPVPGFRSLNVANKS-----EGASGQMNQVHGIIPAANLLKFRLRPYAQLGLDQSSIPSLPTASDIIDELISEIPEIVDASKQIAQLWTPVLKEQCEKPQLIEPPSSSTMLEEPWLQKGVCESELESEKKSFYDSSVGNQFRSPNELECCNSSDEIPVCLEGINRDVMEMVFLGTGSSQPSKYRNVSAIFINLFSHGGILLDCGEGTLAQLKRRFGVRGADDVIKSLKFIWISHIHADHHTGLARILSLRKQLLKNEPHESLLVIGPRPLKRFLDAYSMLEDLGMQFMDCRQTVKESMDAYEQISHDTKDQMRSNKQHVKDNVDGSGQLFKKEMSVGSNLVRFKPETKLEALSAGQNRMHSYWQRPDGFV---LDITGLQRLKKALSEAGLEMLTSVPVVHCPQAFGVVLQAASRNNNGNKTVPGWKLVYSGDTRPCQALIDAACGATVLIHEATFDDSMPEEAVSKNHSLTKEAIEVGASAGAYRIILTHFSQRYPKIPVFDESYMDRTCIAFDLMTVNLADLPFVPKVNPFLKLLFKNEMAAEE
F6HYC8_____________GFNKRRAEGRDKNDRPKTLQLKARKLNPVNTICYVQILGTGMDTQDTSSSVLLFFDKQRFIFNAGEGLQRFCTEHKIKLSKIDHIFLSRVCSETAGGLPGLLLTLAGMGDEGMSVNIWGPSDLKYLVDAMRSFIPNAAMVHTRSFGQALGSDGAPIPDLREFSDPIV---LIDDEVVKISAILLRP----SC--LKGSQIVTEEPNMLYPSE-VGIEGRRDHLQEPILPHSAGEDSKAGAMVKPGDISVIYVCELPEIKGKFDPQKAVALGLKAGPKYRELQLGKSVVSDRKNIMVHPSDVMGPSIPGPLVLLVDCPTESYLQDLLSVESLSSYYAGSSSNPPESAKTVNCVIHLSPASVVRAPNYQVWMKRFGAAQHIMAGHEMKNVEIPILKSSARIAARLNYLCPRFFPAPGFWSLRHLNHSIPELIASSEGSVTKLCESVAAENLLKFHLRPYAQLGLDRSGIPSLSSPSEIIDDLVSEIPEVVDAAQEVGQFWNGFGE---AKGEITPMHDDKVMIEEPWL-----------------------------------NWNTLPGCLENITREDMEIVLLGTGSSQPSKYRNVTSIYINLFSKGSLLLDCGEGTLGQLKRRFSVEGADNAVRGLRCIWISHIHADHHAGLARILTLRRDLLKGVPHEPLLVIGPRQLKRYLDAYQKLEDLDMQFLDCRHTTEVSLNAFE-------CSFETNKEHSSP----EGPVSFEDVN-NRNTVELMNQNIDSSLFAKGSRMQSYWKRPGSPVDHSVAFPILKNLKKVLCEAGLEALISFPVVHCPQAFGVVLKASERINSVGKVIPGWKIVYSGDTRPCPELIEAARGATVLIHEATFEEGMVDEAIARNHSTTNEAIEVGNSAGAYRIILTHFSQRYPKIPVFDDAHMHKTCIAFDLMSVNMADLPVLPKVLPYLKLLFRNEMTVDE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
2526		33		66	1.0
2609	85		14		0.993533
2645	11		88		0.923564
2723	14		85		0.993533
3223			90	10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain