SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene668

Length: 3530 nt

UniGene Fasta

>sp_v3.0_unigene668
CGGACTTTTTTTTCGCATGGGAAGGCATCAGGGACGTTGCTTTGGAGTTAACTGTTTAAAGTCTTTACTTTATAGACTTAGGAGGCTCGTAGTTTTGAGGTTATGAGTTGAGACTTGGGTTTGGGTATTCCTGGAAACGGAGTGAATTTGTTTATTGTAATTTGAAGGATCAGGAAATTATAGTGGACTGGATTAGCTTTACAATGTTGTGTGTTGCGCATCCAGAGAAATTTTATTTGCATATGCTTTTAGAAACACGAGTGTTGTCGCTGTACCAAGTTTCCGTCTGATTCAAATGAGAAGTGTTCAATAGTTACATGATTTGAAATTAAGGGACAGGGAGATCATTTTTTACGGTGGACTGGATTTGCTTTGTGAAACTACAGGAAATTTATTTGCATCTACTCTTAGAAACGAGGGCACGGCACTGAGTTTTGGTCTGGTTCAAATTAAAAGTGCTAAGTAGGGACAGAACAAAGCAGTCTATCATGGTCTATAGCAGGTATGGATAGAAGTGAGCCTTCTCTGGTTCCAGAATGGCTTAAAGGAACTAGTGGCGGGAGTGCAAGCAGTGGTCATCATATTTTTTCTGCTACACCATCAGACAATTCGGATGCTCCATTTGCATCTAGACACAGACCTCTTCAATTACAATCATCTGGAGCCACTCGTGGTGACTACTGCTCACCCCGTTATTCAGGATCATCGGAGAGACCATTTTTGTCCTCTCGAAGAAGCCTGAATACTAACAGCGGGGGTAGTGATCGGACAAATACTGACCGAGATCCTGTCGGACATTCACGTGGTTATGCTAGTTTTCGTCGCAGTTCTTCAGTTCGTGTGTATGATTCGCTAGAACGTGAGAAAGATTGGGAATGGGGTCGAGAATGGGAGGCACATGACAGAGAAAGGTTTTTGGGGGGAGTGAATGGAAATGATAGAAGCAATACCCGTGAGCTATTTGATACCACAAAAAGATGGTCTAATTCAGGACCTGCTGGTAGGTTTGAAAGTGATTCAACTCTAAGGCGCTCCCGATCTGCAATATCAAATAGTAATTTAGAGAATGGAGAAAAGAAATTTGGAAATGAGATGCGAACCGTTATGGCTGCTCCTCTTGCAAGGGGTGGTATTGTAAGTAATATGCAGAAAGCTGCCTTTGAAAAAGATTTTCCCTATCTTGGAGCTGAAGAGAGGCAGGGTATCATTCAATCAAACCCGGCAAATGTTGCTGGGATTAACTCAAGTTCAGGCCCAATTTGGCAAGGACAAGGGCCTGTTGGAAGGCCAGGCACACCAGTAGGTGGGGTTTCTTCTATTGGAGTTGATGGATGGAAATCCGCTTTAGCAGATGCACCGGTTCCAAATGGGTTTGTGTCACTGGGAAATGGTCCATCTACAGCAATTCAACAAATTGCTCCGGGAAGCTTAGTTTCATCCAAAGGTCATGGTCTTGCTTCTACAAGTGGACTTAATATGGCCGAGGCATTGGTGCAAAATCCCCCACGACCTCGTACACCTCAGCTATCGCTTGAGGTTCAAAGGATGGAGGTATTGGCTCTGAAACAGTCAAGGCAGCTGATACCTGTGACTCCCTCTATGCCAAAAACCATGGGTCTTAGCCCTTCTGAAAAGTCAAAGGCAAAATCATTGCGGCCAATTGATACAACTGCTGCTGTTGTTAAAGGTATTCAGTCAATAGGGACATCTCATCCTTTGAACTCTCCCAAAGTTTCTCAGGTTGGGAAGCTTCTAGTTCTCAAGCCAGCAAGAGAGACAGGATCTTCTGTGTCTGTCAAACCTAATAATGGCAGTCCTGTAAAAGGAGGCAATACTGGTAGCAGCTCATTTGGTGTATCAGCTGCAGGTGCCTTTGATGTCAGTGGAAATGCTAGTTTGGTGAGTTTTAGGAAGCAGAAGCCTCATGCTGACCCCAGAGCAATATCCTCGTCTGGAGTGGATAGTGGGTTAGGGCCACGTGGAAAGGAGGTCAACTTTTTGAATGAGGAAAAAAAATCTGTCTCACAAGCCCAAAACCGTAGTGATTTTTTCAATGCGTTGAGGAGGAAAGCATGTGAGGGTCCCAGTTCTACTACAACTCAGGACAAGTCTAATACATCAACACTGCATAAAACTGATCATAAAGCTGATCAAGAGAATGAGAATGTACACGTGAGAACTAAGGATTTAATAGAACTAAAGAATGAGTGTTCTGTTGAAAATGTAGCACAGAAATCTGATACTGTTCATTCAATAGTTGAAATAGAAGCCAGTGAGAAAAATAAAACCACCTTGAATGGTTTTGTTACTGTAGAAAGTGATATTGCTATTAGGGATACCAGTGAAACTGGCAATCCAGCATCTGCCAACAGCGTTTCTGTTAAGGTTGGTTCTGAGGAGGAAGAAGCAGCCTTTCTTCGCTCGCTTGGGTGGGAAGAAAATGCAAGTGGAGAAGAGGAACTTACAGAGGAGGAAATCAATTCTTTTTATCGGGAGCACATGAGGACAGTAGCCGCTGCTAATGCTTTTCGCGAAGGCAGCAGTAGACTTTGGAACCTGAGATTTGATATGCATGTTGGAAATAATGTGGAGAGCTTGTCTTCTGGTATAGGCTCTTCAGAGTCAGCTTAGTTACAGGGTGACTGTCATATGGGAAAGAAACACTAATAGCCTGGCAAGGGATTAGATAGATATAAGATTTGGAAAATTTTGGATTGACTGAAAACATGAAAAAACTGGCTCTTACCCATGTGTTGCTTCAGAAGGTGCAATCATAAGAGGTTGGGTAACGAAGTTCCCTTGAGAGCTTTAGATTGTCAACTTGACAAAGTAGATTGCTGTCAAAGTCGGTTAACGACAACTTGTTTTGGATGAATAGATAATTTGCAATGTGTGCACATGAAATATATGTCACAAGAATAGCACAGAATTATGAAATACAAAGGCTGTGCTTATTAGTAATTTCCATGGTTTTACCTGGGGGTTTTGCAGAGAAAGATGTATATGATTCTTGACTTCTGCGGTTATGCAGAAAAATGGCAGTGAATGTATATTCATGATGCAAAGCGTCATTTTCCCAGGTATGGCATTTGTGCCTTTAGCCAATTTGTGAATTTGGATTTGACAGTAGCAAGATTGGTGGATGCTGCAAGGTTCACTGAGATTTAATGGGCTGGGAATTATCTTGTTGATCATTTTGATCCATTTTTGCTGGGAAGAAAGCTTTGGTCCTCTGATGGTTAGTCTCATTGACACTAAAGATTCTAATTTTTGAGGTATACAAGTTCGAAAGATTGTATTGGGATACGAATCAGTTTTGTAATCTTTTGAACTGCGATTTGTTTTATTTATTCAAAAAGGTATTATTCTTTCCAGTTGACATTCCACTTCAGGACTTGAATTTGTAGTTGCGGATACATACATATTATACTTGCCTGCCATATGACTGAAACATGAATATAACATCAACAATGAATATTGATAAAGGAAGAAGCACAGTCAGTGAAGTAATAGATCAAATATCTTATATT

Ace file of the UniGene sp_v3.0_unigene668

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	32%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A9SCP1

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 82 aas, putative chimeric sequence, your sequence is shorter than subject: 877 - 1137

Fln protein: RTFFSHGKASGTLLWS*LFKVFTL*T*EARSFEVMS*DLGLGIPGNGVNLFIVI*RIRKL*WTGLALQCCVLRIQRNFICICF*KHECCRCTKFPSDSNEKCSIVT*FEIKGQGDHFLRWTGFAL*NYRKFICIYS*KRGHGTEFWSGSN*KC*VGTEQSSLSWSIAGMDRSEPSLVPEWLKGTSGGSASSGHHIFSATPSDNSDAPFASRHRPLQLQSSGATRGDYCSPRYSGSSERPFLSSRRSLNTNSGGSDRTNTDRDPVGHSRGYASFRRSSSVRVYDSLEREKDWEWGREWEAHDRERFLGGVNGNDRSNTRELFDTTKRWSNSGPAGRFESDSTLRRSRSAISNSNLENGEKKFGNEMRTVMAAPLARGGIVSNMQKAAFEKDFPYLGAEERQGIIQSNPANVAGINSSSGPIWQGQGPVGRPGTPVGGVSSIGVDGWKSALADAPVPNGFVSLGNGPSTAIQQIAPGSLVSSKGHGLASTSGLNMAEALVQNPPRPRTPQLSLEVQRMEVLALKQSRQLIPVTPSMPKTMGLSPSEKSKAKSLRPIDTTAAVVKGIQSIGTSHPLNSPKVSQVGKLLVLKPARETGSSVSVKPNNGSPVKGGNTGSSSFGVSAAGAFDVSGNASLVSFRKQKPHADPRAISSSGVDSGLGPRGKEVNFLNEEKKSVSQAQNRSDFFNALRRKACEGPSSTTTQDKSNTSTLHKTDHKADQENENVHVRTKDLIELKNECSVENVAQKSDTVHSIVEIEASEKNKTTLNGFVTVESDIAIRDTSETGNPASANSVSVKVGSEEEEAAFLRSLGWEENASGEEELTEEEINSFYREHMRTVAAANAFREGSSRLWNLRFDMHVGNNVESLSSGIGSSESA*

Protein Length: 878

Fln nts: CGGACTTTTTTTTCGCATGGGAAGGCATCAGGGACGTTGCTTTGGAGTTAACTGTTTAAAGTCTTTACTTTATAGACTTAGGAGGCTCGTAGTTTTGAGGTTATGAGTTGAGACTTGGGTTTGGGTATTCCTGGAAACGGAGTGAATTTGTTTATTGTAATTTGAAGGATCAGGAAATTATAGTGGACTGGATTAGCTTTACAATGTTGTGTGTTGCGCATCCAGAGAAATTTTATTTGCATATGCTTTTAGAAACACGAGTGTTGTCGCTGTACCAAGTTTCCGTCTGATTCAAATGAGAAGTGTTCAATAGTTACATGATTTGAAATTAAGGGACAGGGAGATCATTTTTTACGGTGGACTGGATTTGCTTTGTGAAACTACAGGAAATTTATTTGCATCTACTCTTAGAAACGAGGGCACGGCACTGAGTTTTGGTCTGGTTCAAATTAAAAGTGCTAAGTAGGGACAGAACAAAGCAGTCTATCATGGTCTATAGCAGGTATGGATAGAAGTGAGCCTTCTCTGGTTCCAGAATGGCTTAAAGGAACTAGTGGCGGGAGTGCAAGCAGTGGTCATCATATTTTTTCTGCTACACCATCAGACAATTCGGATGCTCCATTTGCATCTAGACACAGACCTCTTCAATTACAATCATCTGGAGCCACTCGTGGTGACTACTGCTCACCCCGTTATTCAGGATCATCGGAGAGACCATTTTTGTCCTCTCGAAGAAGCCTGAATACTAACAGCGGGGGTAGTGATCGGACAAATACTGACCGAGATCCTGTCGGACATTCACGTGGTTATGCTAGTTTTCGTCGCAGTTCTTCAGTTCGTGTGTATGATTCGCTAGAACGTGAGAAAGATTGGGAATGGGGTCGAGAATGGGAGGCACATGACAGAGAAAGGTTTTTGGGGGGAGTGAATGGAAATGATAGAAGCAATACCCGTGAGCTATTTGATACCACAAAAAGATGGTCTAATTCAGGACCTGCTGGTAGGTTTGAAAGTGATTCAACTCTAAGGCGCTCCCGATCTGCAATATCAAATAGTAATTTAGAGAATGGAGAAAAGAAATTTGGAAATGAGATGCGAACCGTTATGGCTGCTCCTCTTGCAAGGGGTGGTATTGTAAGTAATATGCAGAAAGCTGCCTTTGAAAAAGATTTTCCCTATCTTGGAGCTGAAGAGAGGCAGGGTATCATTCAATCAAACCCGGCAAATGTTGCTGGGATTAACTCAAGTTCAGGCCCAATTTGGCAAGGACAAGGGCCTGTTGGAAGGCCAGGCACACCAGTAGGTGGGGTTTCTTCTATTGGAGTTGATGGATGGAAATCCGCTTTAGCAGATGCACCGGTTCCAAATGGGTTTGTGTCACTGGGAAATGGTCCATCTACAGCAATTCAACAAATTGCTCCGGGAAGCTTAGTTTCATCCAAAGGTCATGGTCTTGCTTCTACAAGTGGACTTAATATGGCCGAGGCATTGGTGCAAAATCCCCCACGACCTCGTACACCTCAGCTATCGCTTGAGGTTCAAAGGATGGAGGTATTGGCTCTGAAACAGTCAAGGCAGCTGATACCTGTGACTCCCTCTATGCCAAAAACCATGGGTCTTAGCCCTTCTGAAAAGTCAAAGGCAAAATCATTGCGGCCAATTGATACAACTGCTGCTGTTGTTAAAGGTATTCAGTCAATAGGGACATCTCATCCTTTGAACTCTCCCAAAGTTTCTCAGGTTGGGAAGCTTCTAGTTCTCAAGCCAGCAAGAGAGACAGGATCTTCTGTGTCTGTCAAACCTAATAATGGCAGTCCTGTAAAAGGAGGCAATACTGGTAGCAGCTCATTTGGTGTATCAGCTGCAGGTGCCTTTGATGTCAGTGGAAATGCTAGTTTGGTGAGTTTTAGGAAGCAGAAGCCTCATGCTGACCCCAGAGCAATATCCTCGTCTGGAGTGGATAGTGGGTTAGGGCCACGTGGAAAGGAGGTCAACTTTTTGAATGAGGAAAAAAAATCTGTCTCACAAGCCCAAAACCGTAGTGATTTTTTCAATGCGTTGAGGAGGAAAGCATGTGAGGGTCCCAGTTCTACTACAACTCAGGACAAGTCTAATACATCAACACTGCATAAAACTGATCATAAAGCTGATCAAGAGAATGAGAATGTACACGTGAGAACTAAGGATTTAATAGAACTAAAGAATGAGTGTTCTGTTGAAAATGTAGCACAGAAATCTGATACTGTTCATTCAATAGTTGAAATAGAAGCCAGTGAGAAAAATAAAACCACCTTGAATGGTTTTGTTACTGTAGAAAGTGATATTGCTATTAGGGATACCAGTGAAACTGGCAATCCAGCATCTGCCAACAGCGTTTCTGTTAAGGTTGGTTCTGAGGAGGAAGAAGCAGCCTTTCTTCGCTCGCTTGGGTGGGAAGAAAATGCAAGTGGAGAAGAGGAACTTACAGAGGAGGAAATCAATTCTTTTTATCGGGAGCACATGAGGACAGTAGCCGCTGCTAATGCTTTTCGCGAAGGCAGCAGTAGACTTTGGAACCTGAGATTTGATATGCATGTTGGAAATAATGTGGAGAGCTTGTCTTCTGGTATAGGCTCTTCAGAGTCAGCTTAG___TTACAGGGTGACTGTCATATGGGAAAGAAACACTAATAGCCTGGCAAGGGATTAGATAGATATAAGATTTGGAAAATTTTGGATTGACTGAAAACATGAAAAAACTGGCTCTTACCCATGTGTTGCTTCAGAAGGTGCAATCATAAGAGGTTGGGTAACGAAGTTCCCTTGAGAGCTTTAGATTGTCAACTTGACAAAGTAGATTGCTGTCAAAGTCGGTTAACGACAACTTGTTTTGGATGAATAGATAATTTGCAATGTGTGCACATGAAATATATGTCACAAGAATAGCACAGAATTATGAAATACAAAGGCTGTGCTTATTAGTAATTTCCATGGTTTTACCTGGGGGTTTTGCAGAGAAAGATGTATATGATTCTTGACTTCTGCGGTTATGCAGAAAAATGGCAGTGAATGTATATTCATGATGCAAAGCGTCATTTTCCCAGGTATGGCATTTGTGCCTTTAGCCAATTTGTGAATTTGGATTTGACAGTAGCAAGATTGGTGGATGCTGCAAGGTTCACTGAGATTTAATGGGCTGGGAATTATCTTGTTGATCATTTTGATCCATTTTTGCTGGGAAGAAAGCTTTGGTCCTCTGATGGTTAGTCTCATTGACACTAAAGATTCTAATTTTTGAGGTATACAAGTTCGAAAGATTGTATTGGGATACGAATCAGTTTTGTAATCTTTTGAACTGCGATTTGTTTTATTTATTCAAAAAGGTATTATTCTTTCCAGTTGACATTCCACTTCAGGACTTGAATTTGTAGTTGCGGATACATACATATTATACTTGCCTGCCATATGACTGAAACATGAATATAACATCAACAATGAATATTGATAAAGGAAGAAGCACAGTCAGTGAAGTAATAGATCAAATATCTTATATT

Fln Alignment:

Contig668___GSN*KC*VGTEQSSLSWSIAGMDRSEPSLVPEWLKXXXXXXXXXXHHIFSATPS---DNSDAPFASRHR-PLQLQSSGATRGDYCSPRYS-GSSERPFLSS--RRSLNTNSGGSDRTNTDRDPVGHSRGYASFRRSSSVRVYDS--------LEREKDWEWGREWE--AHDRERFLGGVNGNDRSNTR--ELFDTTKRWSNSG----PAGRFESD--STLRRSRSAISNSN-LENGEKKFGNEMRTVMAAPLARGGIVSNMQKAAFEKDFPYLGAEERQGIIQSNPANVAG-INSSSGPIWQXXXXXXXXXXXXXXXS-------------------SIGVDGWKSALADAP-VPNGFVSLGNGPSTAIQQIAPGSLVSSKGHGLASTSGLNMAEALVQNPPRPRT-PQLSLEVQRMEVLALKQSRQLIPVTPSMPKTMGLSPSEKSKAKSLRPIDTTAA----VVKGIQSIGTSHPLNSP-------KVSQ-VGKLLVLK-PARETGSSVSVKPNNGSPVKGG-NTXXXXXXXXXXXXXDVSGNASLVSF-------RKQKPHADPRAIS------SSGVDSGLGP-RGKEVNFL-NEEKKSVSQAQNRSDFFNALRRKA--CEGPSSTTTQDKSNTST---LHKTDHKADQENENVH---------------VRTKDLIELKNECSVENVAQKSDTVHSIVEIEASEKNKTT---LNGFVTVESDIAIRDTSETGNPASANXXXXXXXXXXXXAAFLRSLGWEE-NASGEEELTEEEINSFYRE
A9SCP1_____________GGSQKVTVGFLPADLSWSVAGMERSEPSLVPQWLKGAGSGGVGGASH-YSQAPSNHQDESGGSFALRPRVPSPGLASGGRDAEYDAPRFPPSSSDRAYYSSVRRGSGGGSSGIGDRSTQERE--SFSRGYTNFGRSSTYRSYDAGLDRSDRDASRERDWDWDRDRERDGRDRSRVLGGFGGSDERERERTEQSDSLSAFRRPGLGPLPGSRYEADLSAPLRRVQSMGSGARALENGEKKVAEAGNLPTAPPSNSGSLTSSMQKAAFERNFPSLGAQERGSGVSGLLSNLGNLVISSPRPLWQGSSTPRMDGIRSTASSPGLPTGGTSGSGLTSTTSGGISGEGWSSALAEAPTVVNGTVVGHLGSPGAVTTPSTSALASIPVTG-SVTNPPKMADALVQIHPRVRTPPRYSVEKERLEERALQQSRQLIPM---VPKTLGPSPRDKKVDRSVHVTAPSNAMKPRLVMGTSQQVPSSPYRPPASRSEALKLGQGTGKILTRKVPVKEV---VSVLPS--PPVSMGLKTEASPLVATSLVLPLLSGGSSASAVGVLSSAPRKQKQLLDRRALPIPPVSVGSSLDGNIGSISSKDGSFSGGDERRLTVPTQNRVDFFNTLRKKAGLSSAPNIVDKLDVEAAKTDDLVNDVDVEVGLSDEIVRPLDDVGEQPVVDSYPLENGDRQEMDTAVDAEGAASDAGEFGSAAEENGALIGSTTEDVVEEQVFEEADVSLQQQLASGDGLSEH----------EEMLFLISLGWSQADAEETDALTQDEIDAFIQK

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
526	16	83			0.994512
527	16			83	0.994512
528			83	16	0.994512
2709			14	85	0.993533
2710	14		14	71	0.984337
2711		14	14	71	0.984337
2716		14		85	0.993533
2836		11		88	0.923564
2838		88		11	0.923564
2839		11		88	0.923564
2842		88	11		0.923564
2844	88	11			0.923564
2845	88	11			0.923564
2846			88	11	0.923564
2848		88	11		0.923564
2850		11	88		0.923564
2853	88	11			0.923564
2856			88	11	0.923564
2857	88	11			0.923564
2858	11	88			0.923564
2860	88			11	0.923564
2891	11		88		0.923564
2999		16		83	0.999991
3002	75	25			1.0
3003	8		16	75	0.99999
3004	75	8			0.99999
3008		16		83	0.999991
3014	83		16		0.999991
3019	16			83	0.999991
3020		16	83		0.999991
3295	20			80	0.995493
3373		33		66	0.997452
3374		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain