SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene666

Length: 3181 nt

UniGene Fasta

>sp_v3.0_unigene666
CAAATATAATCTACAATCTCTGTATTATAGTTCAAAAATCCTCATACAACCACATCATGGCGAGGGGTCAAATGACGGTTCTTAGAGCTTTAGTTCGGCGAAGCATATTATCGAGGCATTTGTTTTCTGTGAAGCCCATATGTGTTGAAAATTCATATTTTTCGGGGGCGGGTTTTTCAGAACCAGCTTGCCTCGGCTTATCTATGGGGGAAATTCACCGTAGGTACATTCATTCATTTTCTCCCAGCTCGTTGTATTTCGAGCCAGCACTACATCATTTTCAGAACAAACGTTTGAAAACTTTTGGAAATGCAAAATATTTCTCTGTTCTTTCCGAACAGGGCGAGCAAATTTCAGACAGTACCGAGAAAACAGGAGCTGCAACGAGGACTGAAAGTGCGACAGAGATGTCTGAAGATGCAAACAGTTCAGAAATTTCTGAAGATGCCGAAGCTTCAAAGGAAGAAGAAGTCAATATTAGAAGTACTGGAGATATTCTGTTTAGTGATCCTGCGGTTTTGTTTCAAGAGATGAGCCAATTCACCAAAGTTTCGAAACTAGCCAAGTCCGAGATTGAGCAGTTGATGGAGATATTACGGTGGTTTGCGAAGACGGGCTGGGCGCGTGATCAGGCTTTGGCTTTGTATATCAGTGCCTCTTTTTTTCCAACTGCTGTAAGTAAATTCGGAAAATTTTTCGTCAACAAATGTCCGAGGGATGTGTTGGACTATCTGATGAAGTTAGGGCCCTGCAAACAGTCTGATCAGTTTCTTTTTCCAATTTTCATGGAATTTTGCGTGAAAGAGTTTCCGGACGAGATAAAGAGGTTTCGGACTATGGTTCAGTCTGCCGATCTTACGAAGCCGCATACATGGTTTCCGTTTGCACGAGCGATGAAAAGGCAGATTATTTACCACTGTGGGCCAACGAATAGCGGCAAAACATATAATGCTCTGCAACGGTACATGGAGGCAAAGAGTGGGGTTTATTGTAGTCCACTTCGTCTTCTTGCTATGGAAGTGTTTGACAAAGTGAATGCACTTGGTGTATATTGCAGTCTTCATACTGGACAAGAGAAGAAGCGCGTTCCATTTGCAAACCATGTTGCTTGTACTGTAGAAATGGCGTCTACTGATGAATGCTATGAAGTTGCTGTCATCGATGAGATTCAGATGATTGGTGATGAAGTTAGAGGTTTTGCATGGAGCAGAGCATTGCTTGGACTGAAGGCCGATGAGATCCATGTATGCGGGGATCCTAGTTGTTTGTCACTTGTAAGGAATATTTGTGCTGATACTGGGGATGAGCTAATTGAGCACCATTACGGTAGGTTTAAACCCCTGGTTGTCGAAGCCAAGACGATTCTAGGAAATTTCCAAAACATTCAATCCGGGGATTGTATTGTGGCTTTCTCTCGCAGGGAGATCTTCGAGATAAAGTTAGCAGTTGAAAGATTTACTAAGCATCGATGCTGTGTTATATATGGTGCTCTTCCACCTGAGACAAGGAAACAACAGGCAAACCTTTTTAACAGTCAGGATAATGAATATGATGTTCTTGTGGCAAGTGATGCTGTTGGCATGGGTCTTAATTTGAATATCAGAAGAGTTGTATTCTATAGTCTTACAAAACACAATGGTGATAAGAGGATACCTGTTCCAGCTTCTCAGGTGAAGCAGATTGCTGGAAGAGCAGGTAGAAGGGGAAGTGTTTATCCAGAGGGTCTCACAACCACATTCCAATTAGAAGACCTAGACTATCTAATAGAGTGCATGAAAACAACTTTTGTAGAATGTAAAAGTGCTGGCCTCTTCCCCTTCTTTGAACAAGTGGAATTATTTGCTGGGCAACTTCCTGATATTACTTTTTCTCGGTTGCTCGAAAAGTTTGCTGAGAGCTGTGTTTTGGATGGAGCTTTTTTTCTCTGTCGACATGATCATATAAAGAGGGTGGCACATATGCTCGACAGAGTGCCAGGACTGTCACTTGAAGACCGGTACAATTTTTGCTTTTCACCTGTAAATACAAGGGACCCCCAAGCAATGAGCAGTCTACTAAGATTTGCTTTTCAATATAGCAAGAATCTTCCTGTTCGCATAGCGATGGGTGTTCCTAAAGAGTCTGCAAAAAATGACGAGGATCTTTTAAATCTTGAGACGAAGCATCAAGTCTTATCCATGTATATGTGGCTATCCCAACACTTCAGTGAGGGGACATTTCCATATAAGGAGACAGCTGAGCGCATGGCCTCAGATATTGCAGATCTACTTGGCCAATCTCTTGCTAAAGCTCGGTGGAAACCGGAGTCAAGGGGAAGGATCGCGAAGAAAGCTCCACCAGAAAAGGGTGGTCCTGTTGCACGGCAACTTCTACTTATGAAAGCGAGGCAACAAAGGAAAGTGGCATGCTAGGAAATCAGATGCGATAGTACCTTCTTCTGGCAAGAGCTTCAGAGGTTTTTTTTTTCCCAGATCAGATCTCTACACTAGTGGACATTTTACAATTACTTAAGAGTGTCACATTGCAAATACAGTACATTTTCATTATAAATTTGTAAATGTTGGCTATATTTTTTTTACTGTCCTTATCATCTCCTTTTTTCCTTTAATCTCGAAGCCTTTGCGACTCATCCCTTTTTAGTCAGGTCATTCTTTTCATGATCCGCTCTCTGAAGAGAAACTGTTGCGGAAGATGGGAGAATAAAAGGATGCTTCGAAGGCTGCCGTCATGGTTTGACTTCGGAATAAACCCCATTGTTGCTCCCTACCACCACTAACCCATTCTGCAATACAATTCTGATACATCAAAATTGGTATATGGAGAAAAATCCAAATTCCATATGTCTACTGCCTTGTTTTTAACTAATTTTGGAGGGATCATTTGCAGATTCCCTTTTGTACACCTGACCTATTGGCTTCCACTTATGTCAGTCAAAAATTTTCATGGAACACAATGGATGCATTTGTTGGTTACAGTTGGTTGCCGAGAATGGGACTTTGTAACTCGTAGGATTTTTTCTTTTATAGGTGAGTATTACCATTTCTTGGAAAGGATATCTCCCGTGGACCCTGCATTCTCTTGTAACTGCACAGTGGAAATTTGCAAATTGATCATGGGACATCTGGGTTGTTTACTTGATGCCTTTTGTCTAAAAGCTATTATGATTTCTATGTATATTTCA

Ace file of the UniGene sp_v3.0_unigene666

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA and DNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SEF1_RICCO	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	62%
Sma3	RNA helicase like protein	-	-	1.529e-08	-

Source	Gene names
Sma3	AT4g14790; At4g14790; GSVIVT00020027001; GSVIVT00020941001; H0219H12.4; LOC_Os03g53500; MICPUCDRAFT_19531; MICPUN_82395; OJ1124_H03.19; OSIGBa0097P08.9; OSJNBa0036B21.27; OSJNBa0072F16.4; OSTLU_36409; Os03g0746500; Os04g0459800; OsI_13485; OsI_16163; OsI_

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G39840.1	ATP-dependent RNA helicase, mitochondrial, putative chr5:15946769-15949186 FORWARD LENGTH=776	62%
RefSeq	Arabidopsis thaliana	NP_198800.1	putative ATP-dependent RNA helicase [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002324050.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: F6H5S4

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 18 aas, your sequence is shorter than subject: 785 - 806

Fln protein: MARGQMTVLRALVRRSILSRHLFSVKPICVENSYFSGAGFSEPACLGLSMGEIHRRYIHSFSPSSLYFEPALHHFQNKRLKTFGNAKYFSVLSEQGEQISDSTEKTGAATRTESATEMSEDANSSEISEDAEASKEEEVNIRSTGDILFSDPAVLFQEMSQFTKVSKLAKSEIEQLMEILRWFAKTGWARDQALALYISASFFPTAVSKFGKFFVNKCPRDVLDYLMKLGPCKQSDQFLFPIFMEFCVKEFPDEIKRFRTMVQSADLTKPHTWFPFARAMKRQIIYHCGPTNSGKTYNALQRYMEAKSGVYCSPLRLLAMEVFDKVNALGVYCSLHTGQEKKRVPFANHVACTVEMASTDECYEVAVIDEIQMIGDEVRGFAWSRALLGLKADEIHVCGDPSCLSLVRNICADTGDELIEHHYGRFKPLVVEAKTILGNFQNIQSGDCIVAFSRREIFEIKLAVERFTKHRCCVIYGALPPETRKQQANLFNSQDNEYDVLVASDAVGMGLNLNIRRVVFYSLTKHNGDKRIPVPASQVKQIAGRAGRRGSVYPEGLTTTFQLEDLDYLIECMKTTFVECKSAGLFPFFEQVELFAGQLPDITFSRLLEKFAESCVLDGAFFLCRHDHIKRVAHMLDRVPGLSLEDRYNFCFSPVNTRDPQAMSSLLRFAFQYSKNLPVRIAMGVPKESAKNDEDLLNLETKHQVLSMYMWLSQHFSEGTFPYKETAERMASDIADLLGQSLAKARWKPESRGRIAKKAPPEKGGPVARQLLLMKARQQRKVAC*

Protein Length: 786

Fln nts: CAAATATAATCTACAATCTCTGTATTATAGTTCAAAAATCCTCATACAACCACATC_-_ATGGCGAGGGGTCAAATGACGGTTCTTAGAGCTTTAGTTCGGCGAAGCATATTATCGAGGCATTTGTTTTCTGTGAAGCCCATATGTGTTGAAAATTCATATTTTTCGGGGGCGGGTTTTTCAGAACCAGCTTGCCTCGGCTTATCTATGGGGGAAATTCACCGTAGGTACATTCATTCATTTTCTCCCAGCTCGTTGTATTTCGAGCCAGCACTACATCATTTTCAGAACAAACGTTTGAAAACTTTTGGAAATGCAAAATATTTCTCTGTTCTTTCCGAACAGGGCGAGCAAATTTCAGACAGTACCGAGAAAACAGGAGCTGCAACGAGGACTGAAAGTGCGACAGAGATGTCTGAAGATGCAAACAGTTCAGAAATTTCTGAAGATGCCGAAGCTTCAAAGGAAGAAGAAGTCAATATTAGAAGTACTGGAGATATTCTGTTTAGTGATCCTGCGGTTTTGTTTCAAGAGATGAGCCAATTCACCAAAGTTTCGAAACTAGCCAAGTCCGAGATTGAGCAGTTGATGGAGATATTACGGTGGTTTGCGAAGACGGGCTGGGCGCGTGATCAGGCTTTGGCTTTGTATATCAGTGCCTCTTTTTTTCCAACTGCTGTAAGTAAATTCGGAAAATTTTTCGTCAACAAATGTCCGAGGGATGTGTTGGACTATCTGATGAAGTTAGGGCCCTGCAAACAGTCTGATCAGTTTCTTTTTCCAATTTTCATGGAATTTTGCGTGAAAGAGTTTCCGGACGAGATAAAGAGGTTTCGGACTATGGTTCAGTCTGCCGATCTTACGAAGCCGCATACATGGTTTCCGTTTGCACGAGCGATGAAAAGGCAGATTATTTACCACTGTGGGCCAACGAATAGCGGCAAAACATATAATGCTCTGCAACGGTACATGGAGGCAAAGAGTGGGGTTTATTGTAGTCCACTTCGTCTTCTTGCTATGGAAGTGTTTGACAAAGTGAATGCACTTGGTGTATATTGCAGTCTTCATACTGGACAAGAGAAGAAGCGCGTTCCATTTGCAAACCATGTTGCTTGTACTGTAGAAATGGCGTCTACTGATGAATGCTATGAAGTTGCTGTCATCGATGAGATTCAGATGATTGGTGATGAAGTTAGAGGTTTTGCATGGAGCAGAGCATTGCTTGGACTGAAGGCCGATGAGATCCATGTATGCGGGGATCCTAGTTGTTTGTCACTTGTAAGGAATATTTGTGCTGATACTGGGGATGAGCTAATTGAGCACCATTACGGTAGGTTTAAACCCCTGGTTGTCGAAGCCAAGACGATTCTAGGAAATTTCCAAAACATTCAATCCGGGGATTGTATTGTGGCTTTCTCTCGCAGGGAGATCTTCGAGATAAAGTTAGCAGTTGAAAGATTTACTAAGCATCGATGCTGTGTTATATATGGTGCTCTTCCACCTGAGACAAGGAAACAACAGGCAAACCTTTTTAACAGTCAGGATAATGAATATGATGTTCTTGTGGCAAGTGATGCTGTTGGCATGGGTCTTAATTTGAATATCAGAAGAGTTGTATTCTATAGTCTTACAAAACACAATGGTGATAAGAGGATACCTGTTCCAGCTTCTCAGGTGAAGCAGATTGCTGGAAGAGCAGGTAGAAGGGGAAGTGTTTATCCAGAGGGTCTCACAACCACATTCCAATTAGAAGACCTAGACTATCTAATAGAGTGCATGAAAACAACTTTTGTAGAATGTAAAAGTGCTGGCCTCTTCCCCTTCTTTGAACAAGTGGAATTATTTGCTGGGCAACTTCCTGATATTACTTTTTCTCGGTTGCTCGAAAAGTTTGCTGAGAGCTGTGTTTTGGATGGAGCTTTTTTTCTCTGTCGACATGATCATATAAAGAGGGTGGCACATATGCTCGACAGAGTGCCAGGACTGTCACTTGAAGACCGGTACAATTTTTGCTTTTCACCTGTAAATACAAGGGACCCCCAAGCAATGAGCAGTCTACTAAGATTTGCTTTTCAATATAGCAAGAATCTTCCTGTTCGCATAGCGATGGGTGTTCCTAAAGAGTCTGCAAAAAATGACGAGGATCTTTTAAATCTTGAGACGAAGCATCAAGTCTTATCCATGTATATGTGGCTATCCCAACACTTCAGTGAGGGGACATTTCCATATAAGGAGACAGCTGAGCGCATGGCCTCAGATATTGCAGATCTACTTGGCCAATCTCTTGCTAAAGCTCGGTGGAAACCGGAGTCAAGGGGAAGGATCGCGAAGAAAGCTCCACCAGAAAAGGGTGGTCCTGTTGCACGGCAACTTCTACTTATGAAAGCGAGGCAACAAAGGAAAGTGGCATGCTAG___GAAATCAGATGCGATAGTACCTTCTTCTGGCAAGAGCTTCAGAGGTTTTTTTTTTCCCAGATCAGATCTCTACACTAGTGGACATTTTACAATTACTTAAGAGTGTCACATTGCAAATACAGTACATTTTCATTATAAATTTGTAAATGTTGGCTATATTTTTTTTACTGTCCTTATCATCTCCTTTTTTCCTTTAATCTCGAAGCCTTTGCGACTCATCCCTTTTTAGTCAGGTCATTCTTTTCATGATCCGCTCTCTGAAGAGAAACTGTTGCGGAAGATGGGAGAATAAAAGGATGCTTCGAAGGCTGCCGTCATGGTTTGACTTCGGAATAAACCCCATTGTTGCTCCCTACCACCACTAACCCATTCTGCAATACAATTCTGATACATCAAAATTGGTATATGGAGAAAAATCCAAATTCCATATGTCTACTGCCTTGTTTTTAACTAATTTTGGAGGGATCATTTGCAGATTCCCTTTTGTACACCTGACCTATTGGCTTCCACTTATGTCAGTCAAAAATTTTCATGGAACACAATGGATGCATTTGTTGGTTACAGTTGGTTGCCGAGAATGGGACTTTGTAACTCGTAGGATTTTTTCTTTTATAGGTGAGTATTACCATTTCTTGGAAAGGATATCTCCCGTGGACCCTGCATTCTCTTGTAACTGCACAGTGGAAATTTGCAAATTGATCATGGGACATCTGGGTTGTTTACTTGATGCCTTTTGTCTAAAAGCTATTATGATTTCTATGTATATTTCA

Fln Alignment:

Contig666___MARGQMTVLRALVRRSILSRHLFSVKPI--CVE------NSYFSGAGFSEPACLGLSMGEIHRRYIHSFSPSSLYFEPAL--HHFQNKRLKTFGNAKYFSVLS-EQGEQISDSTEKT----GAATRTESATEMSEDANSSEISEDAEASKEEEVNIRSTGDILFSDPAVLFQEMSQFTKVSKLAKSEIEQLMEILRWFAKTGWARDQALALYISASFFPTAVSKFGKFFVNKCPRDVLDYLMKLGPCKQSDQFLFPIFMEFCVKEFPDEIKRFRTMVQSADLTKPHTWFPFARAMKRQIIYHCGPTNSGKTYNALQRYMEAKSGVYCSPLRLLAMEVFDKVNALGVYCSLHTGQEKKRVPFANHVACTVEMASTDECYEVAVIDEIQMIGDEVRGFAWSRALLGLKADEIHVCGDPSCLSLVRNICADTGDELIEHHYGRFKPLVVEAKTILGNFQNIQSGDCIVAFSRREIFEIKLAVERFTKHRCCVIYGALPPETRKQQANLFNSQDNEYDVLVASDAVGMGLNLNIRRVVFYSLTKHNGDKRIPVPASQVKQIAGRAGRRGSVYPEGLTTTFQLEDLDYLIECMKTTFVECKSAGLFPFFEQVELFAGQLPDITFSRLLEKFAESCVLDGAFFLCRHDHIKRVAHMLDRVPGLSLEDRYNFCFSPVNTRDPQAMSSLLRFAFQYSKNLPVRIAMGVPKESAKNDEDLLNLETKHQVLSMYMWLSQHFSEGTFPYKETAERMASDIADLLGQSLAKARWKPESRGRIAKKAPPEKGGPVARQLLLMKARQQRK
F6H5S4_____________MARGPAALL-SRIRSSKHDVSRFRVFPSKRCIHSFGEWRNPTASAFDLSKPAFFTSLMNLVHLQSA-SGSPNLRDFRNSIGARHFSSMREDGDGDENTVPGLTIEDGDDVSSISDSTMVENGDEGKSNCDSSMVESGNSSDDVGSGESVGYEHVAYR--------DPAELYRELCDSQTSAKPTKSDWEMVSEILHHFRKSGWAANQALAIYIGMSFFPTAASKFRSFMSKKCTADVAKYLASLGPGDAAVKFLFPIFVEFCLEEFPDEIKRFRSMIKSADLTKPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQRYMEAKKGIYCSPLRLLAMEVFDKVNALGIYCSLHTGQEKKNVPFSNHTSCTVEMVSTDDIYDVAVIDEIQMMSDPCRGYAWTRALLGLKADEIHLCGDPSVLNVVRKICSETGDELFEQHYERFKPLVVEAKTLLGELQNVRSGDCVVAFSRREIFEVKLAIEKHTNHRCCVIYGALPPETRRQQASLFNDPDNEYDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIVPVPATQVKQIAGRAGRRGSRYPDGLTTTLHLDDLDYLIECLKQPFDDIKKVGLFPFFEQVELFAGQLPDVTLSHLLEKFSENCQLDGSYFLCRHDHIKKVANMLQKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSQNLPVNIAMGMPKGSARNDSELLDLETKHQVLSMYLWLSHHFTEETFPYVKKAETMATGIADLLGQSLSKACWKPESR-QAGKPKPQQKEDGYERPRSLVKLFDERR

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1537		75	25		0.996473
1667	16		83		0.994512
1668		83		16	0.994512
1669			16	83	0.994512
2191		20		80	0.995493
2651		18	81		0.999994
2817		44		55	1.0
2836		83		16	0.994512
2855			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain