SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene630

Length: 2085 nt

UniGene Fasta

>sp_v3.0_unigene630
TACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCCCCATCGAATGTGCCAACAGAAGTTGCGTGCCATCTATTTGACAAATTTTCGGTCGCCCATCTCAAATTCTTCCCTCGGACCGATCCAAACGTTTGTCCTCTCCACCTAAACAATCCGAGATTTTTTTGGTGTTTGGTTTTGTCTAAAAAATGACGATTGTGGCCTCGCCGGAGAAAAGGTCCCGGAAGCAGAAGCCTTTGGTGAGTGAAACCAGTCCCCTGCTGCCCGAGAAGCACCAGGATGGCGAAGATGGTGTTCATGAAGGACTCAATGGCGCCTCCTTCTCCGGTGCGGTGTTCAATCTGTCCACTACGGTGGTGGGAGCGGGGATTATGGCTCTGCCTGCTACTATGAAAGTCTTGGGATTGATCCTCGGCAGTCTCCTCATTATCTTCGTTTGCTTCTTAACGGATGCTTCAATTGACATTCTCTTAAGGTTTAGCAGAGCCGGTGCAGCGGTTTCCTATGGCGGCGTCATGGGAGACGCCTTTGGGAAAATTGGAAAGATGCTGTTGCAGATCTGTGTTATTATTAACAATTTGGGCATTCTTATTGTCTATATGATTATCATAGGCGATGTGCTATCTGGAACATCATCAAATGGCGTGCATCATGTTGGTATACTTGAAGAATGGTTTGGATTTCATTGGTGGAATGGACGTGTTCCGATCCTAGTTCTCACCATAGTCCTTATTTTGGCTCCGTTGGCGTCTTTCAAGAGATTGGATTCTTTGAAAGTCACTTCTGCGTTATGTGTTGCACTCGCTGTTGTGTTTGTTGTGATCACGGCTGGTATCGCGATTGTAAAGTTGTTCTGTGGCACTGTCCAAGCGCCAAGATGGTTACCAGATATTGTTGATCATACTTCCTTCTTGAAGCTTTTCACTGTGGTACCAGTTATTGTGACTTCTTATATCTGTCATTATAATGTTCATTCCATATACAACGAACTTGAGGACCCTTCAGAAATGCAGCCCATTGTTCGCACATCATTGTCATTGTGCTCAATTGTATACATAACTACAAGCTTTTTTGGTGTTCTTCTATTTGGAGACCAGACTATGGATGATGTCCTGGCCAATTTTGACACCAACTTGGGAGTTCCTTACAGTGCTGTGCTGAATGACATTGTTCGTGTGACCTATGTTGTACATCTGATGCTGGTCTTTCCTCTCATATTTTTTGCCCTGCGCCTTAATCTTGACGGGCTTTTATTTCCAGCTAAAAAGCCCCTTGTTTCGGATAATAAGAGGTTCATCTTGATCACTACCGTGCTAATTGGAATCGTTTTCCTCGGGGCATCATTCATACCCAGTATCTGGGATGCATTTCAGTTCACAGGGGCTACTGCAGCAGTTTGTATTGGTTTCATCTTCCCAGCTTCCATTGCTCTCAGAGACACTCATGGAATCTCAACCAAAAAGGACATATATCTGTCATTGTTTATGATTTTTCTCGCAGTAGTTTCAAGTTCAATTGCTATAATGAGCGACATAAATTCTATGTTCAAGAAAAGTGAGGTAGGCCCTCCACGATCTTGAGGATGCTGTTTTCATCAAAAGCAGCAGCCCATGTATATAAAGATGTTTTTGGAGCAGAACAAAGAAAAGAAAACTGATCTAGGAACCTGCTTGTAGAATTGTGAAGGGTGGATAAACTATTGTAAAGCCTCTGTAAAGGCATGGAGTAGCCACTGATCCGGTGCTAGAAATCCTTCAGATATACAAAATTTTGTGTGGCTACTCAACAATAGGGCATTTACTTGGAATATTCTTCAGAAAAGATATTTTGAAGGTCCAGGTAGACCGTAGGTGGTATCGGTTAGAAACATAATTCTTCGGGGTTATGTAAATTTGGAATATTTACTTGTGTGGAAAGCGAGAAGCTACAAAGCAAGCGGAATATTCATAACCATGAGAAGTCCAAAAAGCCACTTGGAAGATGAAACCTGAAACCAGAGGTCACAAAATTGTATAAACCAGGGGTCACAAAATTGTATATTTATATGTATCATTTAATAATATGCCTCTCATGCTTATC

Ace file of the UniGene sp_v3.0_unigene630

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9T738_RICCO	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Amino acid transporter	-	-	9.936e-23	-

Source	Gene names
Sma3	AAT; AT3G30390; At1g80510; At2g40420; At3g30390; At3g56200; B1121A12.26; CTV.3; F18O21_160; GSVIVT00015000001; GSVIVT00029394001; GSVIVT00033226001; GSVIVT00038111001; OSJNBa0039E17.32; OSJNBb0031B09.32; Os01g0825800; Os02g0191300; Os02g0727100; Os06g0275

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sodium:dicarboxylate symporter activity	GO:0017153	Molecular Function	-
Sma3	dicarboxylic acid transport	GO:0006835	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium:dicarboxylate symporter	IPR001991	-	0.0	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G30390.1	Transmembrane amino acid transporter family protein chr3:11977112-11978827 REVERSE LENGTH=460	62%
RefSeq	Arabidopsis thaliana	NP_001030795.1	Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002331285.1	amino acid transporter [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACG6

Fln msg:

Fln protein: MTIVASPEKRSRKQKPLVSETSPLLPEKHQDGEDGVHEGLNGASFSGAVFNLSTTVVGAGIMALPATMKVLGLILGSLLIIFVCFLTDASIDILLRFSRAGAAVSYGGVMGDAFGKIGKMLLQICVIINNLGILIVYMIIIGDVLSGTSSNGVHHVGILEEWFGFHWWNGRVPILVLTIVLILAPLASFKRLDSLKVTSALCVALAVVFVVITAGIAIVKLFCGTVQAPRWLPDIVDHTSFLKLFTVVPVIVTSYICHYNVHSIYNELEDPSEMQPIVRTSLSLCSIVYITTSFFGVLLFGDQTMDDVLANFDTNLGVPYSAVLNDIVRVTYVVHLMLVFPLIFFALRLNLDGLLFPAKKPLVSDNKRFILITTVLIGIVFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTHGISTKKDIYLSLFMIFLAVVSSSIAIMSDINSMFKKSEVGPPRS*

Protein Length: 465

Fln nts: TACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCCCCATCGAATGTGCCAACAGAAGTTGCGTGCCATCTATTTGACAAATTTTCGGTCGCCCATCTCAAATTCTTCCCTCGGACCGATCCAAACGTTTGTCCTCTCCACCTAAACAATCCGAGATTTTTTTGGTGTTTGGTTTTGTCTAAAAA_-_ATGACGATTGTGGCCTCGCCGGAGAAAAGGTCCCGGAAGCAGAAGCCTTTGGTGAGTGAAACCAGTCCCCTGCTGCCCGAGAAGCACCAGGATGGCGAAGATGGTGTTCATGAAGGACTCAATGGCGCCTCCTTCTCCGGTGCGGTGTTCAATCTGTCCACTACGGTGGTGGGAGCGGGGATTATGGCTCTGCCTGCTACTATGAAAGTCTTGGGATTGATCCTCGGCAGTCTCCTCATTATCTTCGTTTGCTTCTTAACGGATGCTTCAATTGACATTCTCTTAAGGTTTAGCAGAGCCGGTGCAGCGGTTTCCTATGGCGGCGTCATGGGAGACGCCTTTGGGAAAATTGGAAAGATGCTGTTGCAGATCTGTGTTATTATTAACAATTTGGGCATTCTTATTGTCTATATGATTATCATAGGCGATGTGCTATCTGGAACATCATCAAATGGCGTGCATCATGTTGGTATACTTGAAGAATGGTTTGGATTTCATTGGTGGAATGGACGTGTTCCGATCCTAGTTCTCACCATAGTCCTTATTTTGGCTCCGTTGGCGTCTTTCAAGAGATTGGATTCTTTGAAAGTCACTTCTGCGTTATGTGTTGCACTCGCTGTTGTGTTTGTTGTGATCACGGCTGGTATCGCGATTGTAAAGTTGTTCTGTGGCACTGTCCAAGCGCCAAGATGGTTACCAGATATTGTTGATCATACTTCCTTCTTGAAGCTTTTCACTGTGGTACCAGTTATTGTGACTTCTTATATCTGTCATTATAATGTTCATTCCATATACAACGAACTTGAGGACCCTTCAGAAATGCAGCCCATTGTTCGCACATCATTGTCATTGTGCTCAATTGTATACATAACTACAAGCTTTTTTGGTGTTCTTCTATTTGGAGACCAGACTATGGATGATGTCCTGGCCAATTTTGACACCAACTTGGGAGTTCCTTACAGTGCTGTGCTGAATGACATTGTTCGTGTGACCTATGTTGTACATCTGATGCTGGTCTTTCCTCTCATATTTTTTGCCCTGCGCCTTAATCTTGACGGGCTTTTATTTCCAGCTAAAAAGCCCCTTGTTTCGGATAATAAGAGGTTCATCTTGATCACTACCGTGCTAATTGGAATCGTTTTCCTCGGGGCATCATTCATACCCAGTATCTGGGATGCATTTCAGTTCACAGGGGCTACTGCAGCAGTTTGTATTGGTTTCATCTTCCCAGCTTCCATTGCTCTCAGAGACACTCATGGAATCTCAACCAAAAAGGACATATATCTGTCATTGTTTATGATTTTTCTCGCAGTAGTTTCAAGTTCAATTGCTATAATGAGCGACATAAATTCTATGTTCAAGAAAAGTGAGGTAGGCCCTCCACGATCTTGA___GGATGCTGTTTTCATCAAAAGCAGCAGCCCATGTATATAAAGATGTTTTTGGAGCAGAACAAAGAAAAGAAAACTGATCTAGGAACCTGCTTGTAGAATTGTGAAGGGTGGATAAACTATTGTAAAGCCTCTGTAAAGGCATGGAGTAGCCACTGATCCGGTGCTAGAAATCCTTCAGATATACAAAATTTTGTGTGGCTACTCAACAATAGGGCATTTACTTGGAATATTCTTCAGAAAAGATATTTTGAAGGTCCAGGTAGACCGTAGGTGGTATCGGTTAGAAACATAATTCTTCGGGGTTATGTAAATTTGGAATATTTACTTGTGTGGAAAGCGAGAAGCTACAAAGCAAGCGGAATATTCATAACCATGAGAAGTCCAAAAAGCCACTTGGAAGATGAAACCTGAAACCAGAGGTCACAAAATTGTATAAACCAGGGGTCACAAAATTGTATATTTATATGTATCATTTAATAATATGCCTCTCATGCTTATC

Fln Alignment:

Contig630___MTIVASPEKRSRKQKPLVSETSPLLPEKHQDGEDGVHEGLNGASFSGAVFNLSTTVVGAGIMALPATMKVXXXXXXXXXXXFVCFLTDASIDILLRFSRAGAAVSYGGVMGDAFGKIGKMLLQICVIINNLGILIVYMIIIGDVLSGTSSNGVHHVGILEEWFGFHWWNGRXXXXXXXXXXXXXXXXSFKRLDSLKVTSXXXXXXXXXXXXITAGIAIVKLFCGTVQAPRWLPDIVDHTSFLKLFTVVPVIVTSYICHYNVHSIYNELEDPSEMQPIVRTSLSLCSIVYITTSFFGVLLFGDQTMDDVLANFDTNLGVPYSAVLNDIVRVTYVVHLMLVFPLIFFALRLNLDGLLFPAKKPLVSDNKRFILITTVLIGIVFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTHGISTKKDIYLSLFMIFLAVVSSSIAIMSDINSMFKKS
D5ACG6_____________MTIVASPERRSRKQKPLVSESSPLLPEKHQDGEDCVHEGFNGASFSGAVFNLSTTVVGAGIMALPATMKVLGLVLGILLIIFVGLLTDASIDILLRFSRAGAAASYGGVMGDAFGRIGKMLLQICVIINNLGILIVYMIIIGDVLSGTSSNGLHHAGILEEWFGFHWWNGRVQILLLTTVLILAPLVSFKKVDSLKFTSALSVALAVVFVVITAGIAIVKLFSGTIQMPRLLPDIVDHTSFLKLFTVVPVIVTAYICHYNVHSIYNELEDPSEMQPIVRTSLALCSIVYITTSFFGFLLFGDQTMDDILANFDTNLGVPYSAVLNDIVRVTYVVHLMLVFPLIFFALRLNLDGLIFPAKKHLVLDNKRFILITAGLIGIVFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTNGISTKKDIYLSLFMIFLAVVSSSIAIFSDINSMFKKN

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
1340		33		66	1.0
1467	85			14	0.993533
1468	85		14		0.993533
1605	33			66	1.0
1606	33			66	1.0
1676		33		66	1.0
1694			33	66	1.0
1722	33		66		1.0
1724	75			25	0.996473
1727		75	25		0.996473
1728	75		25		0.996473
1828	55		44		1.0
1845		90		10	0.90298
1869		10		90	0.90298
1885		11		88	0.923564
1894			12	87	0.992554
1909		14		85	0.993533
1928	42		57		1.0
1932		42	57		1.0
1940			14	85	0.993533
1941	14	14	71		0.984337
1946			75	25	1.0
1947	25		75		1.0
1988			66	33	0.997452
1991		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain