SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene615

Length: 2514 nt

UniGene Fasta

>sp_v3.0_unigene615
GGGGGAAAGGCGGTGAACAGAGCTCATATTCACATCAATACGACTAACGTTGCCAGTCATGGCGAAATCGAAATCGAAATCATTCTTTTCAATCGGTAATTGCAAGGTTGAAGTTGAAGGAAATGTTCAGCACGAACAGGGTGAAGGCGAACTGGAAATCTCGATTTCTGCTGCAACAACTTTAAAAATTACAGTCGATAAGCCCAGACGATATGCGACCAGGAGCTCCCACAAGGAGGATTTGTGGAAGCTGCAGATGACAGCGGGCGAGGAGCTACCGCCCGAGTGTTCTTTCGTAGTTCTCAATCCCAAGCAGACGAATTCCCAAACCAAAGCGCTCTTAGAGGAAGTTTTCAAACTGTACAGTAAAGAACTCCCGATGATGAGTTATTGCGCAAATACTGGGAAGGAGTCTCCATTTGTTGAAAGATGTGTGACACGTGGGAAATACTGCTCACTGGTTGTAAAGTCTGATGCCTTTGTGGGTGCTGAGGAGGTGATAGCTGCAGTAACTTATCAAATAATTCCTGCTAACACACAATATGCTGAAATTCCTCTTGCTGCTGTTGGCAAAAATTACCAACGCAAGGGGTTTGGTCGGCTTCTTTTTAGAGAAGTTAAGAAAAGACTGCATGATGTCGGAGTCTTAACATTATTTTGCTGGGGTGACCAGGAATCTGAAGGATTTTGGCTCAAACAGGGATTTTCAACAATTGCTCAGGTGAATGATAAGGGTAAAGCCAAGAGGCTCCCAATAAAAACTGATGTTCGTAGGGCAATGTCTATGCCCGGTAATGCCATGCTTTTGGTTTCTCACTTAAATGGCGATAATAATGTGTCTGGGAATGCCCAAAACTTTACTCCTCCAAGGGATATAAAGCCATGTCGATTTTCGGTAACTGGTTTCGACGGTTCCAAGTCGAATACAAAAGCATCTCCATTTTGCCATATAACTACTCCAGTAATAACTGAATCGAAACGAAATCTGGCCAAAATTTCCACTATAAAGTGTTCTTTGGATGAAAGTATCAGGCTAGACTATAAGACTGTAGCAATGGATGTTGATCAGTCAGTTACTCCTGAAGTTGAAACGGTTGCAAAAGCAGAAAATGTTTTAGCTCATGATGTTGAATCAGTTGCAAAAGCAGACAATGGTTTAGAATTATCTGCTGCACAGGATTGTTTGGGGAATGATAAAATGGATGCATTTATGAATCAGCATGACATTCCCGTCAAACTGCATGATGGCCAATTGGATAGCACAGCAGACATGGTGAACAGAAACTATGAAAAGAACTGTGGTAATTCAGTATTGGATTCTTGCATGGAGGGGAAGGTTTGTGATTGTAAAGCAGCTGATAATATAGAAGCAACATTAGCAAATTCAAATAATTTAGAAAAGGTGAGCACAACATGTTTGTATATGAGAAGAGGAACAAAGCGAAGTGGGCTACTTGAACAGTTGTATTCCAAATTAAGAAAAGTCAATGAGAATGATCAAAATGATGCGAGTACAATTGCAGAATACAAAAGTAACATTCAATCTATGTTTAAAGTCAACAGTGGAAATGTGACACTAACTAATATTGTGTGTACATCACGAGAACCACTGGGTGAGATACTTCTTCCCATACACACTCAATTTCCAATTTCACAACCGGAAGTTTCCAATGTGGATGCATATGTTCTTGACCCAATAAAAGCTTCTCCAAGCAATGTTGTAGCAGTTTCTGCAGCTAGAATTCAACAACCTGTGATAATGCTCATGAATATGGCTGATGAGAAGAAAAGGATGCATCTTACAAAGATTATTGAGAACCTGGGAGGTACTGTTTCTTGTAATGGGAATATCTGCACACATATTGTCACGGGGCAAGTGAGGAGGACGCTAAATTTTTGTGCTGCACTTTGTGCTGGTGCTTGGGTAGTCTCACCAGAGTGGCTGAAAGCAAGCTTCAGGGAAAGTAAATTTGTAGGTGAAATGCCATACGTCTTGAAGGATAAAGATTTTGAGTCAAAATATGGAGTAAAAGTGGAAGATGTTGTTCTTAAAGCATCTGCTAATCCCCGCGTGTTACTCAATGATTTTCATGTGTATCTTACACCACATGTTCAGCCACAAGTGGAGGATCTTTCAGCCATTATCATGGCTGCAGGTGGCAAGGCTGTGCTAAGCCTAGAAGAAGTGCAAAACCCTTCACATGCTTTTGCTTTAACATGTGAGGAGGATATGTCAGAAGCTCTGGCAGCAGCAATAACGGGGATGCCAACTTATACCAGTGATTGGTTTATGTGCTGCATTATGAGACAAGAACTTGACTTCACGGCTCCACAGTTCACGGAATCCTTGTAACAGAATGAGTTCCTTCACGTGCTATTAAATGTAATTTTTGTAAAATATGAATAATTTTGCTTTCTATACTGTAATGCATTTGAGAGTGTATTTTAACTAGTTATTATGTTCTTGGAGTTTCTTTCCCATTTATACTACTAAATCAATCTTTTCTTTTGTGG

Ace file of the UniGene sp_v3.0_unigene615

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GCN5-related N-acetyltransferase; BRCT [Medicago truncatula]	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	52%

Source	Gene names
Sma3	At2g41450; GSVIVT00025326001; MtrDRAFT_AC158502g21v2; OSJNBa0007A06.10; Os05g0376600; OsI_19742; OsI_19743; OsJ_18339; OsJ_18340; PHYPADRAFT_121153; PHYPADRAFT_139838; POPTRDRAFT_560444; RCOM_0255070; VITISV_041860;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	N-acetyltransferase activity	GO:0008080	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	FBD	IPR006566	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3		IPR013596	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G41450.1	" N-acetyltransferases;N-acetyltransferases chr2:17278190-17281637 FORWARD LENGTH=612"	48%
RefSeq	Arabidopsis thaliana	NP_181676.2	N-acetyltransferase [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002308001.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: F6HLN0

Fln msg: atg_distance in limit (1-15): atg_distance = 11, Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 765 - 630

Fln protein: MAKSKSKSFFSIGNCKVEVEGNVQHEQGEGELEISISAATTLKITVDKPRRYATRSSHKEDLWKLQMTAGEELPPECSFVVLNPKQTNSQTKALLEEVFKLYSKELPMMSYCANTGKESPFVERCVTRGKYCSLVVKSDAFVGAEEVIAAVTYQIIPANTQYAEIPLAAVGKNYQRKGFGRLLFREVKKRLHDVGVLTLFCWGDQESEGFWLKQGFSTIAQVNDKGKAKRLPIKTDVRRAMSMPGNAMLLVSHLNGDNNVSGNAQNFTPPRDIKPCRFSVTGFDGSKSNTKASPFCHITTPVITESKRNLAKISTIKCSLDESIRLDYKTVAMDVDQSVTPEVETVAKAENVLAHDVESVAKADNGLELSAAQDCLGNDKMDAFMNQHDIPVKLHDGQLDSTADMVNRNYEKNCGNSVLDSCMEGKVCDCKAADNIEATLANSNNLEKVSTTCLYMRRGTKRSGLLEQLYSKLRKVNENDQNDASTIAEYKSNIQSMFKVNSGNVTLTNIVCTSREPLGEILLPIHTQFPISQPEVSNVDAYVLDPIKASPSNVVAVSAARIQQPVIMLMNMADEKKRMHLTKIIENLGGTVSCNGNICTHIVTGQVRRTLNFCAALCAGAWVVSPEWLKASFRESKFVGEMPYVLKDKDFESKYGVKVEDVVLKASANPRVLLNDFHVYLTPHVQPQVEDLSAIIMAAGGKAVLSLEEVQNPSHAFALTCEEDMSEALAAAITGMPTYTSDWFMCCIMRQELDFTAPQFTESL*

Protein Length: 766

Fln nts: GGGGGAAAGGCGGTGAACAGAGCTCATATTCACATCAATACGACTAACGTTGCCAGTC_-_ATGGCGAAATCGAAATCGAAATCATTCTTTTCAATCGGTAATTGCAAGGTTGAAGTTGAAGGAAATGTTCAGCACGAACAGGGTGAAGGCGAACTGGAAATCTCGATTTCTGCTGCAACAACTTTAAAAATTACAGTCGATAAGCCCAGACGATATGCGACCAGGAGCTCCCACAAGGAGGATTTGTGGAAGCTGCAGATGACAGCGGGCGAGGAGCTACCGCCCGAGTGTTCTTTCGTAGTTCTCAATCCCAAGCAGACGAATTCCCAAACCAAAGCGCTCTTAGAGGAAGTTTTCAAACTGTACAGTAAAGAACTCCCGATGATGAGTTATTGCGCAAATACTGGGAAGGAGTCTCCATTTGTTGAAAGATGTGTGACACGTGGGAAATACTGCTCACTGGTTGTAAAGTCTGATGCCTTTGTGGGTGCTGAGGAGGTGATAGCTGCAGTAACTTATCAAATAATTCCTGCTAACACACAATATGCTGAAATTCCTCTTGCTGCTGTTGGCAAAAATTACCAACGCAAGGGGTTTGGTCGGCTTCTTTTTAGAGAAGTTAAGAAAAGACTGCATGATGTCGGAGTCTTAACATTATTTTGCTGGGGTGACCAGGAATCTGAAGGATTTTGGCTCAAACAGGGATTTTCAACAATTGCTCAGGTGAATGATAAGGGTAAAGCCAAGAGGCTCCCAATAAAAACTGATGTTCGTAGGGCAATGTCTATGCCCGGTAATGCCATGCTTTTGGTTTCTCACTTAAATGGCGATAATAATGTGTCTGGGAATGCCCAAAACTTTACTCCTCCAAGGGATATAAAGCCATGTCGATTTTCGGTAACTGGTTTCGACGGTTCCAAGTCGAATACAAAAGCATCTCCATTTTGCCATATAACTACTCCAGTAATAACTGAATCGAAACGAAATCTGGCCAAAATTTCCACTATAAAGTGTTCTTTGGATGAAAGTATCAGGCTAGACTATAAGACTGTAGCAATGGATGTTGATCAGTCAGTTACTCCTGAAGTTGAAACGGTTGCAAAAGCAGAAAATGTTTTAGCTCATGATGTTGAATCAGTTGCAAAAGCAGACAATGGTTTAGAATTATCTGCTGCACAGGATTGTTTGGGGAATGATAAAATGGATGCATTTATGAATCAGCATGACATTCCCGTCAAACTGCATGATGGCCAATTGGATAGCACAGCAGACATGGTGAACAGAAACTATGAAAAGAACTGTGGTAATTCAGTATTGGATTCTTGCATGGAGGGGAAGGTTTGTGATTGTAAAGCAGCTGATAATATAGAAGCAACATTAGCAAATTCAAATAATTTAGAAAAGGTGAGCACAACATGTTTGTATATGAGAAGAGGAACAAAGCGAAGTGGGCTACTTGAACAGTTGTATTCCAAATTAAGAAAAGTCAATGAGAATGATCAAAATGATGCGAGTACAATTGCAGAATACAAAAGTAACATTCAATCTATGTTTAAAGTCAACAGTGGAAATGTGACACTAACTAATATTGTGTGTACATCACGAGAACCACTGGGTGAGATACTTCTTCCCATACACACTCAATTTCCAATTTCACAACCGGAAGTTTCCAATGTGGATGCATATGTTCTTGACCCAATAAAAGCTTCTCCAAGCAATGTTGTAGCAGTTTCTGCAGCTAGAATTCAACAACCTGTGATAATGCTCATGAATATGGCTGATGAGAAGAAAAGGATGCATCTTACAAAGATTATTGAGAACCTGGGAGGTACTGTTTCTTGTAATGGGAATATCTGCACACATATTGTCACGGGGCAAGTGAGGAGGACGCTAAATTTTTGTGCTGCACTTTGTGCTGGTGCTTGGGTAGTCTCACCAGAGTGGCTGAAAGCAAGCTTCAGGGAAAGTAAATTTGTAGGTGAAATGCCATACGTCTTGAAGGATAAAGATTTTGAGTCAAAATATGGAGTAAAAGTGGAAGATGTTGTTCTTAAAGCATCTGCTAATCCCCGCGTGTTACTCAATGATTTTCATGTGTATCTTACACCACATGTTCAGCCACAAGTGGAGGATCTTTCAGCCATTATCATGGCTGCAGGTGGCAAGGCTGTGCTAAGCCTAGAAGAAGTGCAAAACCCTTCACATGCTTTTGCTTTAACATGTGAGGAGGATATGTCAGAAGCTCTGGCAGCAGCAATAACGGGGATGCCAACTTATACCAGTGATTGGTTTATGTGCTGCATTATGAGACAAGAACTTGACTTCACGGCTCCACAGTTCACGGAATCCTTGTAACAGAATGAGTTCCTTCACGTGCTATTAAATGTAATTTTTGTAAAATATGAATAATTTTGCTTTCTATACTGTAATGCATTTGAGAGTGTATTTTAACTAGTTATTATGTTCTTGGAGTTTCTTTCCCATTTATACTACTAAATCAATCTTTTCTTTTGTGG

Fln Alignment:

Contig615___GNCKVEVEGNVQHEQGEGELEISISAATTLKITVDKPRRYATRSSHKEDLWKLQMTAGEELPPECSFVVLNPKQTNSQTKALLEEVFKLYSKELPMMSYCANTGKESPFVERCVTRGKYCSLVVKSDAFVGAEEVIAAVTYQIIPANTQYAEIPLAAVGKNYQRKGFGRLLFREVKKRLHDVGVLTLFCWGDQESEGFWLKQGFSTIAQVNDKGKAKRLPIKTDVRRAMSMPGNAMLLVSHLNGD
F6HLN0_____________GNCEISIQGKATCQSDPNCLLISASKNT--KIKVSGLTLFVCFTSVKAE----RTSFGDEY----FFLLINPKDVCSQSKSLLQEVLNIYKEELPAMNYAANTGKESMFLERCVSNGKYCSLLLLSNFMEGPGKVIAAVTYQIIPADTQYAEIPLTAVSSNFQSKGIGRLLYIELRKRLQNVGIRTIFCWGDKESEGFWLKQGFVSIAEVDTKGRARRLPIRADIRRALCFPGGSTLMVSHLSKD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1991		80		20	0.995493
1995	14			85	0.993533
1998	85		14		0.993533
1999	85		14		0.993533
2062		85		14	0.993533
2481	20	80			0.995493
2483	20			80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
63	81	CGAAAT CGAAAT CGAAAT C	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain