SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene610

Length: 2944 nt

UniGene Fasta

>sp_v3.0_unigene610
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAGTCGAAATATAATAATGTTATCCCAGTTGAATTGAAATTCGAAGGGGAGACTCGAGAGAGATCAGGATGAGGATGAGGAGAGCAGCACAACAATAATAGGTATAACAGACATGGCCCAATGAAATTCTTGTAGACTGATCTATTTCATGGTCCAGCAGCGGCAGCAAGCAATCAAACCTGTTGGGTGCATGCATGGCTTCTTGAAGGCAAAACCAGGGAATAACCAGCAATACAGTGAGGTGAATAGGTGGGAGACTGTTGAGATCTGATATGGTGTCGAAATCGAATGCAATTTATGTGGAGTTGGGGGAGGATCCTCTGCCATTTGGGATGAAGAATGAACAGAATGTGCCCCTAACAGCAGTGGACATGGCGCCCTCGCCACACGGGTCCCAAGTTGGGGAGAAAATAATCATAGTGGCCAATGTTTTGCCCTTGACTGCAGTGAGAAAGCCTGATAATCTAGGGTGGTCATTTGGGTGGGACAAAGATTCTTTATTGCTTCAGCTGAGGGATGGATTGGGGGAGGGCATTGAGGTTGTTTATGTGGGTTGTCTTAGTGTTGAAATTGATCCCAAAGAGCAGGATGTGGTGGCAGCCACTCTTCTTGGGAGCTTCAATTGTGTCCCTGCTTTTTGTCACAGTGATCTCAGGAGGCGGTACTATCATGGCTTCTGCAAGCAGCAGTTATGGCCACTGTTCCATTACATGCTCCCCTTGACACCTGATCACGGTGGCAGATTTGACCGGTCGCTCTGGCAGGCATATCTTTCCGTTAATAAAATCTTTGCTGATAGGGTCATGGAGGTCATTAGCCCTGATGAGGATTCTGTGTGGATCCATGATTACCATCTCATGCTTCTTCCGACATTTCTGCGAAAGAGGTTCAACAAGATGAAGATAGGCTTCTTCCTTCACAGCCCATTTCCCTCCTCTGAGATTTACCGCACTCTTCCGGTGCGTGAAGAGATTCTGAGGGGTCTCCTCAATGCTGATCTGATTGGGTTTCATACATTCGATTATGCGAGGCACTTTCTTTCTTGCTGCAGTAGGATGTTGGGATTGGAGTATGAGTCCAAGAGAGGGTATATAGGCCTGGAGTATTATGGGCGCACTGTGGGGATCAAGATTATGCCTGTGGGCATACATATGAGTCAGCTTGAGGGTGTATTAAGGCTTGCTGATACCGAGTGGCGGATTAGTGAGTTGAAGGCAAAGTATGAGGGCAAGATTGTGCTTCTTGGGGTTGATGACATGGACATTTTCAAGGGCATAGGCTTGAAACTTCTGGCAATGGAACAGCTTCTCTATCAGCACCCAGAATTGGTTGGTAAATTGGTCATGGTGCAAATTCTCAACCCTGCACGCGGGCGAGGTAGGGATGTTGTGGAGGTCCAGGAGGAGATATCTGTCACCTCAGAAAGGATAAATGAGTCATTTGGTACTGAAAGATATCAACCTGTTGAATTGGTGCAGAGACATGTTCCGTTGTATGAAAGGGTTGCATATTACACAATTGCAGAATGTTGTGTTGTATCTGCAGTCCGGGATGGTATGAATTTGATTCCATATGAATACATTGTTTGCAGGCAAGGTATTACAGAACTAGATGCCAGATTTGGAATCACATCTGATAAGCCTAAAGATAGTATGCTGGTAGTGTCCGAGTTTATTGGATGCTCCCCCTCTCTTAGTGGAGCTATTCGTGTAAATCCATGGAATATTGAAGCTTTAGCTGATGCTATGAATACTGCCATTACAATGCCAGATGCTGAGAAGCAAATGAGACATGAAAAGCATTTTAGGTATGTCAGCACTCATGATGTAGCCTTTTGGGCCCAGAGTTTCATAGGAGACTTGCAAAGAACCTGCAGAGAGCACTCTAGAAGCCGAAGCTATAGACTAGGATTTGGATTGGGATTCAGAGTGGTGCGGCTTGATTATAATTTTCGAAAACTTTCAACTGAGCATATTGTCTGGGCTTACAAAAAGAGTAATAGACGAGCCATTCTTTTGGATTATGATGGTACCATGATGCCTCAAACTTCAATTAACAGGACTCCAAACTCAGATGTCCTGACGGTCCTAAACACCCTTTGCAATGATCCAAAGAATGTGGTCTTTATTGTAAGTGGACGAGGGCAACAAACTTTGAATGATTGGTTTTCACCCTGTAAAAATCTTGGGATTGCTGCAGAGCATGGTTATTATTTCAGGTGGCAGAAGGATGAAGAATGGAAAACTTGTGTGCCAACGATGGATTTTGGTTGGAAAGCAGTTGTGGGCCCCATTATGAAGTTGTACACAGAAAGCACAGATGGTTCATTTATTGAGGCCAAAGAGAGTAGTATTGTATGGCACTTCCAGGATGCAGATCCAGATTTTGGTTCTTGGCAAGCAAAGGAGTTGCAGGATCATCTTGAGAGTGTGCTGGCAAATGAGCCGGTTGTTGTCAAGAGCGGTCAGCAAATTGTGGAAGTCAAGCCTCAGGGAGTGAGCAAGGGTGTTATAGTTGAACATCTTTTAACAACGATGGCTAGCCAGGGGAATCCTCCAGATTTTGTCTTGTGTATAGGAGATGATCGTTCAGATGAGGACATGTTTGAGATTATTGACAGTGCAATGGCAGCCTTACCGAAAACTGCAAAGAGGGAGGTCTTTGCCTGCACTGTTGGTCAGAAGCCGAGTAAAGCTAAATATTACCTGGATGATACTGTTGAAGTTGTTAACATGTTACATGGACTTGCATCAGCAAGCGAATCATTATCTGGGAGCTCACCAAGGGCTATTGCTTCTGTTTCAGAAGGCTGATTCCAAAGTTCATGTATTCTTTTGTGCAGTTCGATGAATAAAACAAATATAAATATCCGAATAAAATTTTGCTTTTTGATGCTGTGTGCTTTGT

Ace file of the UniGene sp_v3.0_unigene610

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Trehalose-6-phosphate synthase n=1 Tax=Ginkgo biloba RepID=Q5D6D9_GINBI	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Trehalose-6-phosphate synthase, putative	-	-	2.443e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alpha,alpha-trehalose-phosphate synthase (UDP-forming).	EC:2.4.1.15	-	7.70714e-44	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		7.70714e-44	%
Sma3	Trehalose-phosphatase.	EC:3.1.3.12	-	3.042e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		3.042e-18	%

Source	Gene names
Sma3	23.t00017; 40.t00052; At1g06410; At1g23870; At1g60140; At1g68020; At1g70290; At2g18700; At4g17770; B1130G10.15; F17O7.18; FCAALL.9; GSVIVT00007211001; GSVIVT00013860001; GSVIVT00015722001; GSVIVT00016126001; GSVIVT00017367001; GSVIVT00018785001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	GO:0003825	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	trehalose biosynthetic process	GO:0005992	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIB	IPR006379	-	-
Sma3	HAT dimerisation	IPR008906	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G68020.2	ATTPS6, TPS6 UDP-Glycosyltransferase / trehalose-phosphatase family protein chr1:25497493-25500241 FORWARD LENGTH=860	63%
RefSeq	Arabidopsis thaliana	NP_974105.1	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002304347.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZZ7

Fln msg: your sequence is longer than subject: 847 - 173

Fln protein: MVSKSNAIYVELGEDPLPFGMKNEQNVPLTAVDMAPSPHGSQVGEKIIIVANVLPLTAVRKPDNLGWSFGWDKDSLLLQLRDGLGEGIEVVYVGCLSVEIDPKEQDVVAATLLGSFNCVPAFCHSDLRRRYYHGFCKQQLWPLFHYMLPLTPDHGGRFDRSLWQAYLSVNKIFADRVMEVISPDEDSVWIHDYHLMLLPTFLRKRFNKMKIGFFLHSPFPSSEIYRTLPVREEILRGLLNADLIGFHTFDYARHFLSCCSRMLGLEYESKRGYIGLEYYGRTVGIKIMPVGIHMSQLEGVLRLADTEWRISELKAKYEGKIVLLGVDDMDIFKGIGLKLLAMEQLLYQHPELVGKLVMVQILNPARGRGRDVVEVQEEISVTSERINESFGTERYQPVELVQRHVPLYERVAYYTIAECCVVSAVRDGMNLIPYEYIVCRQGITELDARFGITSDKPKDSMLVVSEFIGCSPSLSGAIRVNPWNIEALADAMNTAITMPDAEKQMRHEKHFRYVSTHDVAFWAQSFIGDLQRTCREHSRSRSYRLGFGLGFRVVRLDYNFRKLSTEHIVWAYKKSNRRAILLDYDGTMMPQTSINRTPNSDVLTVLNTLCNDPKNVVFIVSGRGQQTLNDWFSPCKNLGIAAEHGYYFRWQKDEEWKTCVPTMDFGWKAVVGPIMKLYTESTDGSFIEAKESSIVWHFQDADPDFGSWQAKELQDHLESVLANEPVVVKSGQQIVEVKPQGVSKGVIVEHLLTTMASQGNPPDFVLCIGDDRSDEDMFEIIDSAMAALPKTAKREVFACTVGQKPSKAKYYLDDTVEVVNMLHGLASASESLSGSSPRAIASVSEG*

Protein Length: 848

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAGTCGAAATATAATAATGTTATCCCAGTTGAATTGAAATTCGAAGGGGAGACTCGAGAGAGATCAGGATGAGGATGAGGAGAGCAGCACAACAATAATAGGTATAACAGACATGGCCCAATGAAATTCTTGTAGACTGATCTATTTCATGGTCCAGCAGCGGCAGCAAGCAATCAAACCTGTTGGGTGCATGCATGGCTTCTTGAAGGCAAAACCAGGGAATAACCAGCAATACAGTGAGGTGAATAGGTGGGAGACTGTTGAGATCTGAT_-_ATGGTGTCGAAATCGAATGCAATTTATGTGGAGTTGGGGGAGGATCCTCTGCCATTTGGGATGAAGAATGAACAGAATGTGCCCCTAACAGCAGTGGACATGGCGCCCTCGCCACACGGGTCCCAAGTTGGGGAGAAAATAATCATAGTGGCCAATGTTTTGCCCTTGACTGCAGTGAGAAAGCCTGATAATCTAGGGTGGTCATTTGGGTGGGACAAAGATTCTTTATTGCTTCAGCTGAGGGATGGATTGGGGGAGGGCATTGAGGTTGTTTATGTGGGTTGTCTTAGTGTTGAAATTGATCCCAAAGAGCAGGATGTGGTGGCAGCCACTCTTCTTGGGAGCTTCAATTGTGTCCCTGCTTTTTGTCACAGTGATCTCAGGAGGCGGTACTATCATGGCTTCTGCAAGCAGCAGTTATGGCCACTGTTCCATTACATGCTCCCCTTGACACCTGATCACGGTGGCAGATTTGACCGGTCGCTCTGGCAGGCATATCTTTCCGTTAATAAAATCTTTGCTGATAGGGTCATGGAGGTCATTAGCCCTGATGAGGATTCTGTGTGGATCCATGATTACCATCTCATGCTTCTTCCGACATTTCTGCGAAAGAGGTTCAACAAGATGAAGATAGGCTTCTTCCTTCACAGCCCATTTCCCTCCTCTGAGATTTACCGCACTCTTCCGGTGCGTGAAGAGATTCTGAGGGGTCTCCTCAATGCTGATCTGATTGGGTTTCATACATTCGATTATGCGAGGCACTTTCTTTCTTGCTGCAGTAGGATGTTGGGATTGGAGTATGAGTCCAAGAGAGGGTATATAGGCCTGGAGTATTATGGGCGCACTGTGGGGATCAAGATTATGCCTGTGGGCATACATATGAGTCAGCTTGAGGGTGTATTAAGGCTTGCTGATACCGAGTGGCGGATTAGTGAGTTGAAGGCAAAGTATGAGGGCAAGATTGTGCTTCTTGGGGTTGATGACATGGACATTTTCAAGGGCATAGGCTTGAAACTTCTGGCAATGGAACAGCTTCTCTATCAGCACCCAGAATTGGTTGGTAAATTGGTCATGGTGCAAATTCTCAACCCTGCACGCGGGCGAGGTAGGGATGTTGTGGAGGTCCAGGAGGAGATATCTGTCACCTCAGAAAGGATAAATGAGTCATTTGGTACTGAAAGATATCAACCTGTTGAATTGGTGCAGAGACATGTTCCGTTGTATGAAAGGGTTGCATATTACACAATTGCAGAATGTTGTGTTGTATCTGCAGTCCGGGATGGTATGAATTTGATTCCATATGAATACATTGTTTGCAGGCAAGGTATTACAGAACTAGATGCCAGATTTGGAATCACATCTGATAAGCCTAAAGATAGTATGCTGGTAGTGTCCGAGTTTATTGGATGCTCCCCCTCTCTTAGTGGAGCTATTCGTGTAAATCCATGGAATATTGAAGCTTTAGCTGATGCTATGAATACTGCCATTACAATGCCAGATGCTGAGAAGCAAATGAGACATGAAAAGCATTTTAGGTATGTCAGCACTCATGATGTAGCCTTTTGGGCCCAGAGTTTCATAGGAGACTTGCAAAGAACCTGCAGAGAGCACTCTAGAAGCCGAAGCTATAGACTAGGATTTGGATTGGGATTCAGAGTGGTGCGGCTTGATTATAATTTTCGAAAACTTTCAACTGAGCATATTGTCTGGGCTTACAAAAAGAGTAATAGACGAGCCATTCTTTTGGATTATGATGGTACCATGATGCCTCAAACTTCAATTAACAGGACTCCAAACTCAGATGTCCTGACGGTCCTAAACACCCTTTGCAATGATCCAAAGAATGTGGTCTTTATTGTAAGTGGACGAGGGCAACAAACTTTGAATGATTGGTTTTCACCCTGTAAAAATCTTGGGATTGCTGCAGAGCATGGTTATTATTTCAGGTGGCAGAAGGATGAAGAATGGAAAACTTGTGTGCCAACGATGGATTTTGGTTGGAAAGCAGTTGTGGGCCCCATTATGAAGTTGTACACAGAAAGCACAGATGGTTCATTTATTGAGGCCAAAGAGAGTAGTATTGTATGGCACTTCCAGGATGCAGATCCAGATTTTGGTTCTTGGCAAGCAAAGGAGTTGCAGGATCATCTTGAGAGTGTGCTGGCAAATGAGCCGGTTGTTGTCAAGAGCGGTCAGCAAATTGTGGAAGTCAAGCCTCAGGGAGTGAGCAAGGGTGTTATAGTTGAACATCTTTTAACAACGATGGCTAGCCAGGGGAATCCTCCAGATTTTGTCTTGTGTATAGGAGATGATCGTTCAGATGAGGACATGTTTGAGATTATTGACAGTGCAATGGCAGCCTTACCGAAAACTGCAAAGAGGGAGGTCTTTGCCTGCACTGTTGGTCAGAAGCCGAGTAAAGCTAAATATTACCTGGATGATACTGTTGAAGTTGTTAACATGTTACATGGACTTGCATCAGCAAGCGAATCATTATCTGGGAGCTCACCAAGGGCTATTGCTTCTGTTTCAGAAGGCTGA___TTCCAAAGTTCATGTATTCTTTTGTGCAGTTCGATGAATAAAACAAATATAAATATCCGAATAAAATTTTGCTTTTTGATGCTGTGTGCTTTGT

Fln Alignment:

Contig610___MKLYTESTDGSFIEAKESSIVWHFQDADPDFGSWQAKELQDHLESVLANEPVVVKSGQQIVEVKPQGVSKGVIVEHLLTTMASQGNPPDFVLCIGDDRSDEDMFEIIDSAMAALPKTAKREVFACTVGQKPSKAKYYLDDTVEVVNML
A9NZZ7_____________MKLYTETTDGSTIEAKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPVVVKSGHHIVEVKPQGISKGLVAEQLLSTMVQRGKRPDFVLCIGDDRSDEDMFEGITRAVSGPTLSPIAEVFACTVGQKPSKAKYYLDDTVDVVRML

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1478			25	75	0.996473
1479			25	75	0.996473
1729	12	87			0.992554
1731			12	87	0.992554
1732	87		12		0.992554
1755	62		37		1.0
1910			83	16	0.994512
2138			85	14	0.993533
2140		28		71	1.0
2200	16			83	0.994512
2271	83		16		0.994512
2272	83		16		0.994512
2313	85			14	0.993533
2314	85		14		0.993533
2316		85	14		0.993533
2331		14		85	0.993533
2337	85		14		0.993533
2483	11	88			0.923564
2485		11	88		0.923564
2486			88	11	0.923564
2488			11	88	0.923564
2490		11		88	0.923564
2496	88	11			0.923564
2497			88	11	0.923564
2498	88	11			0.923564
2499	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain