SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene589

Length: 528 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene589
TGGTCAGCCGTTCATTTCGGAGGAGGACATAAATGCATTGGAGGCTTTACAGAACAGCTTCAAGCAGTGCTTGAGTGCAAATGGACTGGGTTTGCAAGCTGTGAGAAAAGACTACTGCTGGGTGACTCTAAATTTTCCTACTGACACGGTGCCCAAGTGGAAAGATCCAAAGACTGGAGAGCTGGAGAGCTTATCATTCAACTTCAACCTTTGTGAAGCCTTAAGTACATGGGAACAGGTGCGCAATAGTAGCACAATACTCACACGGGAGTACATTGATGGATTGCCACATGGATGGGAGGAATACGCATGGCGGAGAATTAATAAAGGGATTCTGCTTAATAAATGTCAAAACAAAACACTCTGCATGGAGAAGCTTGCATCGGTCCTCCCAGATACACCGCCTTTTCTCCCACGGCAGTATGGACGTTGTGCAGTGGTCGGGAATTCAGGTGATCTTTTGAAAACAAGTTTGGAAAGGAGATTGACAGTTATGATGCTATCATACGAGGGAATGGAGCTCCTACA

Ace file of the UniGene sp_v3.0_unigene589 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycosyltransferase family 29 (sialyltransferase) protein [Arabidopsis thaliana] gb\|AAL85966.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91750.1\| unknown protein [Arabidopsis thaliana] gb\|AEE78459.1\| glycosyltransferase family 29 (sialyltransferase) p	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	71%
Sma3	Sialyltransferase-like protein	-	-	1.582e-28	-

Source	Gene names
Sma3	At1g08660; At3g48820; GSVIVT00018018001; LOC_Os11g36420; OJ1217_F02.7; Os02g0118400; Os11g0572400; OsI_05598; OsI_36547; OsJ_05135; OsJ_34319; PHYPADRAFT_143894; PHYPADRAFT_155266; POPTRDRAFT_572878; POPTRDRAFT_824794; RCOM_1445300; RCOM_1504540; T21J18_9

Source	GOs	Term	Type	Identity
Sma3	integral to Golgi membrane	GO:0030173	Cellular Component	-
Sma3	sialyltransferase activity	GO:0008373	Molecular Function	-
Sma3	protein glycosylation	GO:0006486	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 29	IPR001675	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G48820.1	Glycosyltransferase family 29 (sialyltransferase) family protein chr3:18100106-18102852 REVERSE LENGTH=440	70%
RefSeq	Arabidopsis thaliana	NP_190451.2	glycosyltransferase family 29 (sialyltransferase) protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002322294.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SH57

Fln msg: Distance to subject end: 232 aas, your sequence is shorter than subject: 175 - 439

Fln protein: GQPFISEEDINALEALQNSFKQCLSANGLGLQAVRKDYCWVTLNFPTDTVPKWKDPKTGELESLSFNFNLCEALSTWEQVRNSSTILTREYIDGLPHGWEEYAWRRINKGILLNKCQNKTLCMEKLASVLPDTPPFLPRQYGRCAVVGNSGDLLKTSLERRLTVMMLSYEGMELL

Protein Length: 176

Fln nts: TGGTCAGCCGTTCATTTCGGAGGAGGACATAAATGCATTGGAGGCTTTACAGAACAGCTTCAAGCAGTGCTTGAGTGCAAATGGACTGGGTTTGCAAGCTGTGAGAAAAGACTACTGCTGGGTGACTCTAAATTTTCCTACTGACACGGTGCCCAAGTGGAAAGATCCAAAGACTGGAGAGCTGGAGAGCTTATCATTCAACTTCAACCTTTGTGAAGCCTTAAGTACATGGGAACAGGTGCGCAATAGTAGCACAATACTCACACGGGAGTACATTGATGGATTGCCACATGGATGGGAGGAATACGCATGGCGGAGAATTAATAAAGGGATTCTGCTTAATAAATGTCAAAACAAAACACTCTGCATGGAGAAGCTTGCATCGGTCCTCCCAGATACACCGCCTTTTCTCCCACGGCAGTATGGACGTTGTGCAGTGGTCGGGAATTCAGGTGATCTTTTGAAAACAAGTTTGGAAAGGAGATTGACAGTTATGATGCTATCATACGAGGGAATGGAGCTCCTACA

Fln Alignment:

Contig589___ISEEDINALEALQNSFKQCLSANGLGLQAVR-KDYCWVTLNFPTDTVPKWKDPKTGELESLSFNFNLCEALSTWEQVRNSSTILTREYIDGLPHGWEEYAWRRINKGILLNKCQNKTLCMEKLASVLPDTPPFLPRQYGRCAVVGNSGDLLKTSLERRL
D7SH57_____________LSDEDLGALESLQSGFQKCVSSNGLGLQAARGRDYCQVTIKFPSDTVPKWKDPKTGELEGLSFDFNLCEAVATWEQVRNSTTILTKEFIDALPNGWTDYAWRRINKGILLNNCKNKTLCMEKLSLVLPETPPYFPRQFDRCAVIGNSGDLLKTRFGKEI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
297	10	20			0.999998
300	10	90			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain