SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene500

Length: 2330 nt

UniGene Fasta

>sp_v3.0_unigene500
CTCAGCTCGGTACAGATGCTGCATTAATATCAGTACGACCATTTTTGCCAATCGAATCCTCAATACCCACATGCGTTTTGTGCCTCATTTCATCATCCTTCCTGTCTTTTACTTGATTGGAAGACTATACGTTCACACACTTAGAATAGACCCACACATAACTTCTCATGGGTCATATTTGTAGTTGCAAATGGCAACTTTTGATTCTGCTCTGCTTTGTCTTCTTTCCATTTGCTGCTCCTACAGAAGGGAGGAGGTTGGCCCAGACTCCCAAGGTTAGAGGTGTGAATCTGGGTGGATGGCTAGTTGTGGAAGGATGGATAAAGCCTTCTCTGTTTGATGACATCAAGGACAACGATCTTCTTGACGGAACAAAGGTTCAGTTCAAATCGGCGACATTGAACACGTACGTGAGTGCAGAGAATGGGGGTGGGCAGAATGCTGTTGTTAATAGGGACAATGCTTCTACCTGGGAGACTTTCAAGATGTGGAGAGTCTCAGATGGCATGTATCAACTTAGAGTGTTTAGTGGTCAATTCCTAACAGCAGAAAATGGAGGAGGAGGCAACGTGTCTGCAGAAGCAGATTCTCCTGCTGATTGGGAAACATTCCACATAATTAGGCACCATAAACATCCTAACCGAGTGCATATCAGGGTGTCCAATGGAATGTATATGCAGGCACAATCCCAGGAGCAGCTTACAGCAGATTACCAAGGGGATCCTGGGTGGCATGACAATTCAGCAACCTTCCAGATGATTATAGTTGCCAATGATTTGCATGGAGATTACCAGCTTGCAAATGGATATGGCCGTGATAAAGCAAAGAAAGTTTACCATAGACATAGAAGCAGCTTTATTACAGATAAGGATTTCAAATTCCTCTCCAGGAATGGTATAAATACCGTTAGAATTCCTGTTGGGTGGTGGATTGCATATGATCCGAATCCACCAGCACCTTTCGTAGGAGGATCTTTACAATCTCTCGATAATGCTTTTAAATGGGCAGATCATTATGGTTTAAAGGTTATTGTTGACCTCCATGCGGCACCTGGTTCACAAAATGGAATGGAGCATAGTGCCAGCAGAGATGGATCTGCTGACTGGTCTAACTCTTCAGACCATATTTCCCAAAGTTTAACTGTTATTGATTTCCTTGTTTCGAGATATAGTAACAATAGTATGCTCTTAGGTATTGAATTGCTGAATGAACCTCTAGCAACAACTGTTCCTGTGGATGTTTTGGCTTCCTATTATTCAAATGGCTATCAAACTGTGCGGAAGTACTCTGCCACAACATATGTTATCATGTGCCAGAGGATTGGAAATGCTGATCCACATGAGCTGTATCAAATAAATGATGCATTTTCAAATATCGTTGTCGATGTTCACTACTATAATCTTTTTGATGATTATTTTGATAACAAGACTGCCCAAGATAATATTGACTTCATCTTGAAGAACAGGGAACCCCAAGTGGAAGCTCTAAACAGCACAAATGGTCCTCTCATATTTGTCGGTGAATGGACAAATGAGTGGAAGGTGCAAGGAGCTTCAAGGTCGGAATATCAACAGTTTGGTGATGCACAATTACAAGCTTATGAAAAGGCTTCATTTGGTTGGTCATATTGGACTCTAAAGAACGAAGAGAAGCACTGGGATTTTGAGTGGAATATCAAGCACAACTACCTTAGATTAGGTAATTCGAGGGCAACATCAAACAAGAGTATATCTTGGAGAATATATGCCTTTTTGTTGATCTTTGGGTGTATTTATGTATGAGACTTGAGTAGCCGGGCAATCTGACACTTTAATGCTGCTAAAAAATAGCTGGTGGTTCTTTCTGAAATAGATTTGACATATATGATGGGACAATTCCTACATTTTAATCCACTGAAGGGCAACAGTGATTGGTACTTGCAGTGATTCCATGATTCAATTCTTGCTCTTTTTCCAGAGCATAGAATTATATCAACCTCCTGAAGTGTGGAATAAACTTATGACAGAGGACATCACCAGGTTTAAACAGAATCTAAGCAATTTAAAGAGAATTAACATGTGAGATGGTACAGAATCCATACTGTGGACCTCCGCAGAAATGGCAGATTCTATATAAGCAACTGCAAAGGTGGCAAAACCTTGTAATAAGAAATGACCTGGGTTGTAAACGTACATTAAATACTGTTAACTGCATTCACTTCAAGGAATTGACGTCGGATTCATTCTTTGTTTTTGCTGTTCAATTTATCCAACCACTTGAACCTTGTATACGAGACATGGAATTGGCCTATATCGAAATTTGGAGAGTATTTTCCCTCTGAAATTATAATC

Ace file of the UniGene sp_v3.0_unigene500

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative 1,3-beta glucanase [Oryza sativa Japonica Group] dbj\|BAD10703.1\| putative 1,3-beta glucanase [Oryza sativa Japonica Group]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Putative Glucan 1,3-beta-glucosidase	-	-	9.17e-09	-

Source	Gene names
Sma3	GSVIVT00011447001; GSVIVT00011902001; GSVIVT00011904001; GSVIVT00015266001; LOC_Os10g22520; LOC_Os10g22570; OJ1003C07.1; OJ1111_H02.28; OJ1208D02.11; OJ1208D02.5; OJA1208D02.1; OSJNBa0037H06.1; Os05g0244500; Os08g0484100; Os10g0370500; Os10g0370800; OsI_1

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ	IPR013114	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002310872.1	predicted protein, partial [Populus trichocarpa]	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKR6

Fln msg:

Fln protein: MGHICSCKWQLLILLCFVFFPFAAPTEGRRLAQTPKVRGVNLGGWLVVEGWIKPSLFDDIKDNDLLDGTKVQFKSATLNTYVSAENGGGQNAVVNRDNASTWETFKMWRVSDGMYQLRVFSGQFLTAENGGGGNVSAEADSPADWETFHIIRHHKHPNRVHIRVSNGMYMQAQSQEQLTADYQGDPGWHDNSATFQMIIVANDLHGDYQLANGYGRDKAKKVYHRHRSSFITDKDFKFLSRNGINTVRIPVGWWIAYDPNPPAPFVGGSLQSLDNAFKWADHYGLKVIVDLHAAPGSQNGMEHSASRDGSADWSNSSDHISQSLTVIDFLVSRYSNNSMLLGIELLNEPLATTVPVDVLASYYSNGYQTVRKYSATTYVIMCQRIGNADPHELYQINDAFSNIVVDVHYYNLFDDYFDNKTAQDNIDFILKNREPQVEALNSTNGPLIFVGEWTNEWKVQGASRSEYQQFGDAQLQAYEKASFGWSYWTLKNEEKHWDFEWNIKHNYLRLGNSRATSNKSISWRIYAFLLIFGCIYV*

Protein Length: 539

Fln nts: CTCAGCTCGGTACAGATGCTGCATTAATATCAGTACGACCATTTTTGCCAATCGAATCCTCAATACCCACATGCGTTTTGTGCCTCATTTCATCATCCTTCCTGTCTTTTACTTGATTGGAAGACTATACGTTCACACACTTAGAATAGACCCACACATAACTTCTC_-_ATGGGTCATATTTGTAGTTGCAAATGGCAACTTTTGATTCTGCTCTGCTTTGTCTTCTTTCCATTTGCTGCTCCTACAGAAGGGAGGAGGTTGGCCCAGACTCCCAAGGTTAGAGGTGTGAATCTGGGTGGATGGCTAGTTGTGGAAGGATGGATAAAGCCTTCTCTGTTTGATGACATCAAGGACAACGATCTTCTTGACGGAACAAAGGTTCAGTTCAAATCGGCGACATTGAACACGTACGTGAGTGCAGAGAATGGGGGTGGGCAGAATGCTGTTGTTAATAGGGACAATGCTTCTACCTGGGAGACTTTCAAGATGTGGAGAGTCTCAGATGGCATGTATCAACTTAGAGTGTTTAGTGGTCAATTCCTAACAGCAGAAAATGGAGGAGGAGGCAACGTGTCTGCAGAAGCAGATTCTCCTGCTGATTGGGAAACATTCCACATAATTAGGCACCATAAACATCCTAACCGAGTGCATATCAGGGTGTCCAATGGAATGTATATGCAGGCACAATCCCAGGAGCAGCTTACAGCAGATTACCAAGGGGATCCTGGGTGGCATGACAATTCAGCAACCTTCCAGATGATTATAGTTGCCAATGATTTGCATGGAGATTACCAGCTTGCAAATGGATATGGCCGTGATAAAGCAAAGAAAGTTTACCATAGACATAGAAGCAGCTTTATTACAGATAAGGATTTCAAATTCCTCTCCAGGAATGGTATAAATACCGTTAGAATTCCTGTTGGGTGGTGGATTGCATATGATCCGAATCCACCAGCACCTTTCGTAGGAGGATCTTTACAATCTCTCGATAATGCTTTTAAATGGGCAGATCATTATGGTTTAAAGGTTATTGTTGACCTCCATGCGGCACCTGGTTCACAAAATGGAATGGAGCATAGTGCCAGCAGAGATGGATCTGCTGACTGGTCTAACTCTTCAGACCATATTTCCCAAAGTTTAACTGTTATTGATTTCCTTGTTTCGAGATATAGTAACAATAGTATGCTCTTAGGTATTGAATTGCTGAATGAACCTCTAGCAACAACTGTTCCTGTGGATGTTTTGGCTTCCTATTATTCAAATGGCTATCAAACTGTGCGGAAGTACTCTGCCACAACATATGTTATCATGTGCCAGAGGATTGGAAATGCTGATCCACATGAGCTGTATCAAATAAATGATGCATTTTCAAATATCGTTGTCGATGTTCACTACTATAATCTTTTTGATGATTATTTTGATAACAAGACTGCCCAAGATAATATTGACTTCATCTTGAAGAACAGGGAACCCCAAGTGGAAGCTCTAAACAGCACAAATGGTCCTCTCATATTTGTCGGTGAATGGACAAATGAGTGGAAGGTGCAAGGAGCTTCAAGGTCGGAATATCAACAGTTTGGTGATGCACAATTACAAGCTTATGAAAAGGCTTCATTTGGTTGGTCATATTGGACTCTAAAGAACGAAGAGAAGCACTGGGATTTTGAGTGGAATATCAAGCACAACTACCTTAGATTAGGTAATTCGAGGGCAACATCAAACAAGAGTATATCTTGGAGAATATATGCCTTTTTGTTGATCTTTGGGTGTATTTATGTATGA___GACTTGAGTAGCCGGGCAATCTGACACTTTAATGCTGCTAAAAAATAGCTGGTGGTTCTTTCTGAAATAGATTTGACATATATGATGGGACAATTCCTACATTTTAATCCACTGAAGGGCAACAGTGATTGGTACTTGCAGTGATTCCATGATTCAATTCTTGCTCTTTTTCCAGAGCATAGAATTATATCAACCTCCTGAAGTGTGGAATAAACTTATGACAGAGGACATCACCAGGTTTAAACAGAATCTAAGCAATTTAAAGAGAATTAACATGTGAGATGGTACAGAATCCATACTGTGGACCTCCGCAGAAATGGCAGATTCTATATAAGCAACTGCAAAGGTGGCAAAACCTTGTAATAAGAAATGACCTGGGTTGTAAACGTACATTAAATACTGTTAACTGCATTCACTTCAAGGAATTGACGTCGGATTCATTCTTTGTTTTTGCTGTTCAATTTATCCAACCACTTGAACCTTGTATACGAGACATGGAATTGGCCTATATCGAAATTTGGAGAGTATTTTCCCTCTGAAATTATAATC

Fln Alignment:

Contig500___MGHICSCKWQLLILLCFVFFPFAAPTEGRRLAQTPKVRGVNLGGWLVVEGWIKPSLFDDIKDNDLLDGTKVQFKSATLNTYVSAENGGGQNAVVNRDNASTWETFKMWRVSDGMYQLRVFSGQFLTAENGGGGNVSAEADSPADWETFHIIRHHKHPNRVHIRVSNGMYMQAQSQEQLTADYQGDPGWHD-NSATFQMIIVAND--LHGDYQLANGYGRDKAKKVYHRHRSSFITDKDFKFLSRNGINTVRIPVGWWIAYDPNPPAPFVGGSLQSLDNAFKWADHYGLKVIVDLHAAPGSQNGMEHSASRDGSADWSNSSDHISQSLTVIDFLVSRYSNNSMLLGIELLNEPLATT------VPVDVLASYYSNGYQTVRKYSATTYVIMCQRIGNADPHELYQINDAFSNIVVDVHYYNLFDD-YFDNKTAQDNIDFILKNREPQVEALNSTNGPLIFVGEWTNEWKVQGASRSEYQQFGDAQLQAYEKASFGWSYWTLKNEEKHWDFEWNIKHNYLRL
B8LKR6_____________MAHSMLC----LHLVLVVLLSFLALRSGAQ-----KYRSVNLGGWLVVEGWIKPSLFDDVQDRDLMDGAQIQLKSVKLGNFVSAEDGGGKNLVVNRGSASGWETFRVWRVKDGTYQFRAFNKQFVRAVNAGGGIVDATADTPREWETFQIIRNPSNKNQVHIKAYNGMYIQAQSQDQLTADFQGEPGWNDGNAATFEMNIVTGDYGIGGEYQLTNGLGPDKAPQVMNDHWNSFITESDFEFMSSKGITAVRIPVGWWIASDPNPPAPFVGGSLKALDNAFTWAKNHNIGVIVDLHAVPGSQNGDAHSGTRDGYLEWPNSQDNIDKSISVIDFLAGRYASNSALLGIELLNEPRASTDPNAPGVPLDTLKTYYKRGYDTIRKHSPSAYVIMCNRIGPADAKELFDINNGLTRTVVDVHYYNLYDDSTFKSMSVQQNIDYINNNRAQILQSLTSANGPLIYVGEWTNEWEYQGASMSDYQRFGKAQLQVYGTATFGWSYWTLKNVQNHWSFEWMVQNNYLQL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1824		50		50	1.0
1975	87		12		0.992554
2029	10	90			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain