SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene490

Length: 2865 nt

UniGene Fasta

>sp_v3.0_unigene490
GAAAGAAGACCAGAAAAAACAGGGAAAAGAAATAGCAAAGCTTCAGAAAGAGTTGCGTGATGTGACAGCAGCCCTGAACGAATTGAATGAACAAGGCCAGGAAGGAGGGGGGACATTGCAGTTAGCTGATAGTCAGCTCAAGGAGTACCATAGAATAAAGGAGGAAGCTGGTCTAAAAACTGCAAAACTGAGGGATGAAAAGGAGGTATATGATAGCCAGCAGCAAGCTGATGTTGAGGCTCAGAAGAACTTGGAAGAGAATCTTCAACAATTAGTTAACAGGGAGCAACAGTTGGCATCTCAAGAGGAGCAAATGCAAGCTCGGTTGAAAAGACTTCTCGACTCATTTGGCAAAAATACAGAGGAACTATCAAAAGTGCAGAGTGAACTGGGTCAAATGCAAGATAGACATCGTAAATCCAGGACAAAATATGATAACTTGAAGGCAAAGGTTGATGAAATAGAAGTTCAATTGCGTGAATTGAAGGCAGACAAGCGTGAAAGTGAACGGGATGCCAAGTTATCTGAGACTGTTGAAAGCTTGAAGCGTCTATTTCCCGGTGTACATGGTCGAATGACAGACCTTTGTAGGCCTATTCAGAAGAAGTATAATCTTGCAATTACTGTTGCCATGGGAAAGTTCATGGATGCAGTTGTAGTGGATGATGAAAATACTGGGAAAGAATGTATCAAGTATCTAAAGGAGCAACGACTTCCTCCTCAAACCTTTATCCCCAATCAAGTAGTCCGTGTGAAACCAATACATGAGAAGTTGCGCACACTGGGAGGGACTGCAAAACTAATTTTTGATGTTATTCAATTTGATCCGGCATTAGAGAGGGCTATTCTGTATGCAGTGAGCAATACATTAGTCTGTGATGGCCTTGAAGAGGCTAAAGCTCTTGGTTGGGGCAATGAGCGCTATAGAGTGGTTACTGTGGATGGTATTCTGCTTACAAAATCTGGTACGATGACTGGTGGAATTACTGGTAACATGGAAGCTAGATCCCAGAAGTGGGATGATCGGGCAATTGAAGCTCTTAAGAAGAACAAAGAACGTTATGAATCAGAGATGGCAGAGCTAGGATCTGTAAGAGAAATGCAGATCAAAGAGGCAGAAGCAAGTGGGAAGATTAGTGGACTTGAAAGAAAGATTCAGTATGCTGAAATTGAAAAGAAAACTATAGAGGGAAAACTATCAAAATTGCAGCAGGAGAGAGCAAATATTAGAGTGGAGATTGACCGACTGAAGCCTGAGCTTGAAAAGTTGAAAGGACTTACTGCCAATAGAACCAGGAATATAACAAAGATTGAGAACAGAATTAATGAGATAGTGGACAGAATCTACAAAGATTTCAGTGAGTCAGTAGGAGTAGCAAATATTCGTGAGTATGAGGAAAACCAACTAAGGGAAGCCCAAGAGCTTTCTGAAAGAAGGCTTAAGCTGAGCAGTCAGATGTCGAAACTGAAGTACCAGCTGGAGTATGAGCAGAGGCGCGATACTGAGGCTCCAATCAAAAAATTAAATGCCTCTCTAATTACATTGGATGAGGAGCTTAAAAAAGTTCAAAATCAAGAGGCTGAAGCTAAATCAGCAATGGATGATGCCATACATCAGCTAGATGAAATTAAAAAGGAAGCTGAGGGGCAGAAATCAAAGGCAGATGAGTGCGAAAGTGTTATACAGGATCTGAAAAAGCAAGCTAGCAATGTCACAACGAATATTGGAAAACTGAAGCGCCAGATTTCTGCCAAGGAAACACAAATTGAACAGCTAAAATCTCGAAAGCAGGAGGTACTAGAGAACTGTGAACTGGAACAGATAAAACTTCCTACCTTAACCACTCCCATGGAAACAGATTCATCAGGACCTAGTTTTCCAACAAATTTTGATTACTCGAAGCTTAGCAGATCTCATCAACAGGATCTGAGGCCAGCTGACAGAGAGAAACTTGAAGCAGAATTTAAAAATAAAATGGATTCGATGACATCAGAAATAGAGAGAACAGCACCTAATTTGAAAGCATTAGATCAATATGAGGCTCTGCGTGAAAAGGAAAGAGAAGTAATTGAAGAGTTTGAAGCAGCTAGGAAAGAAGAGAAGGAAATAACTGACAAATATAATTCTGTAAAACAGAAGAGATATGAAACATTTATGGATGCATTCAACCACATATCAACAAACATTGATAAGATCTACAAACAGCTGACTCAGAGTAATACGCATCCTTTTGGAGGAACGGCATATCTGAGCCTGGAAAATGAAGATGACCCTTTCTTACATGGTATCAAGTACACAGCTATGCCTCCAACAAAGCGCTTCAGAGAAATGGAACAATTATCTGGAGGGGAAAAGACTGTTGCTGCTCTTGCTTTGTTGTTTGCTATCCATAGTTTCAGGCCTTCACCTTTTTTTGTTCTGGATGAAGTAGATGCAGCATTGGACAATTTGAACGTTGCTAAAGTTGCAGCTTTCATCAGATTGAAATCCCGTGATGAGAACAAGGATCAAGATAAAGATGGTGTTGGCTTTCAAAGTATAGTGATCTCTTTGAAAGATAATTTCTATGTTAAAGCTGACGCGTTGGTGGGAGTTTATAGGGATTCTGAAAGAAGCTGCTCCAGAACTCTAACATTTGACCTCAGCAAGTATGGTGATACATAAACTGTTGTAAATGGTATCAACATTTCTCTATGTAGTTTGAATTTTAAGTTCCAAATGACAAGTAAGATGTATTTTCTGAAAGTAATTTTCATTGACATTTTATGCCAATGGTAGTGTATATTTATCAAATTTCAGTATATGGAATTTGGTTTGTGCATGCAAGAATGAAATTGAGTTTACCAATTGATTGCTTATATGCT

Ace file of the UniGene sp_v3.0_unigene490

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	structural maintenance of chromosomes 1 protein [Arabidopsis thaliana]	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%

Source	Gene names
Sma3	CPC1502; CPC902; GSVIVT00028583001; LOC_Os12g44390; Os12g0641500; OsI_39293; OsJ_37035; PHYPADRAFT_131965; POPTRDRAFT_559701; RCOM_0499140; SMC1; T5N23_30; VITISV_015634; smc1;

Source	GOs	Term	Type	Identity
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	chromosome organization	GO:0051276	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RecF/RecN/SMC	IPR003395	-	-
Sma3	SMCs flexible hinge	IPR010935	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G54670.3	TTN8 Structural maintenance of chromosomes (SMC) family protein chr3:20235818-20243701 FORWARD LENGTH=1239	60%
RefSeq	Arabidopsis thaliana	NP_001190092.1	structural maintenance of chromosomes 1 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002307647.1	condensin complex components subunit [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9A1

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 784 - 295

Fln protein: MQARLKRLLDSFGKNTEELSKVQSELGQMQDRHRKSRTKYDNLKAKVDEIEVQLRELKADKRESERDAKLSETVESLKRLFPGVHGRMTDLCRPIQKKYNLAITVAMGKFMDAVVVDDENTGKECIKYLKEQRLPPQTFIPNQVVRVKPIHEKLRTLGGTAKLIFDVIQFDPALERAILYAVSNTLVCDGLEEAKALGWGNERYRVVTVDGILLTKSGTMTGGITGNMEARSQKWDDRAIEALKKNKERYESEMAELGSVREMQIKEAEASGKISGLERKIQYAEIEKKTIEGKLSKLQQERANIRVEIDRLKPELEKLKGLTANRTRNITKIENRINEIVDRIYKDFSESVGVANIREYEENQLREAQELSERRLKLSSQMSKLKYQLEYEQRRDTEAPIKKLNASLITLDEELKKVQNQEAEAKSAMDDAIHQLDEIKKEAEGQKSKADECESVIQDLKKQASNVTTNIGKLKRQISAKETQIEQLKSRKQEVLENCELEQIKLPTLTTPMETDSSGPSFPTNFDYSKLSRSHQQDLRPADREKLEAEFKNKMDSMTSEIERTAPNLKALDQYEALREKEREVIEEFEAARKEEKEITDKYNSVKQKRYETFMDAFNHISTNIDKIYKQLTQSNTHPFGGTAYLSLENEDDPFLHGIKYTAMPPTKRFREMEQLSGGEKTVAALALLFAIHSFRPSPFFVLDEVDAALDNLNVAKVAAFIRLKSRDENKDQDKDGVGFQSIVISLKDNFYVKADALVGVYRDSERSCSRTLTFDLSKYGDT*

Protein Length: 785

Fln nts: GAAAGAAGACCAGAAAAAACAGGGAAAAGAAATAGCAAAGCTTCAGAAAGAGTTGCGTGATGTGACAGCAGCCCTGAACGAATTGAATGAACAAGGCCAGGAAGGAGGGGGGACATTGCAGTTAGCTGATAGTCAGCTCAAGGAGTACCATAGAATAAAGGAGGAAGCTGGTCTAAAAACTGCAAAACTGAGGGATGAAAAGGAGGTATATGATAGCCAGCAGCAAGCTGATGTTGAGGCTCAGAAGAACTTGGAAGAGAATCTTCAACAATTAGTTAACAGGGAGCAACAGTTGGCATCTCAAGAGGAGCAA_-_ATGCAAGCTCGGTTGAAAAGACTTCTCGACTCATTTGGCAAAAATACAGAGGAACTATCAAAAGTGCAGAGTGAACTGGGTCAAATGCAAGATAGACATCGTAAATCCAGGACAAAATATGATAACTTGAAGGCAAAGGTTGATGAAATAGAAGTTCAATTGCGTGAATTGAAGGCAGACAAGCGTGAAAGTGAACGGGATGCCAAGTTATCTGAGACTGTTGAAAGCTTGAAGCGTCTATTTCCCGGTGTACATGGTCGAATGACAGACCTTTGTAGGCCTATTCAGAAGAAGTATAATCTTGCAATTACTGTTGCCATGGGAAAGTTCATGGATGCAGTTGTAGTGGATGATGAAAATACTGGGAAAGAATGTATCAAGTATCTAAAGGAGCAACGACTTCCTCCTCAAACCTTTATCCCCAATCAAGTAGTCCGTGTGAAACCAATACATGAGAAGTTGCGCACACTGGGAGGGACTGCAAAACTAATTTTTGATGTTATTCAATTTGATCCGGCATTAGAGAGGGCTATTCTGTATGCAGTGAGCAATACATTAGTCTGTGATGGCCTTGAAGAGGCTAAAGCTCTTGGTTGGGGCAATGAGCGCTATAGAGTGGTTACTGTGGATGGTATTCTGCTTACAAAATCTGGTACGATGACTGGTGGAATTACTGGTAACATGGAAGCTAGATCCCAGAAGTGGGATGATCGGGCAATTGAAGCTCTTAAGAAGAACAAAGAACGTTATGAATCAGAGATGGCAGAGCTAGGATCTGTAAGAGAAATGCAGATCAAAGAGGCAGAAGCAAGTGGGAAGATTAGTGGACTTGAAAGAAAGATTCAGTATGCTGAAATTGAAAAGAAAACTATAGAGGGAAAACTATCAAAATTGCAGCAGGAGAGAGCAAATATTAGAGTGGAGATTGACCGACTGAAGCCTGAGCTTGAAAAGTTGAAAGGACTTACTGCCAATAGAACCAGGAATATAACAAAGATTGAGAACAGAATTAATGAGATAGTGGACAGAATCTACAAAGATTTCAGTGAGTCAGTAGGAGTAGCAAATATTCGTGAGTATGAGGAAAACCAACTAAGGGAAGCCCAAGAGCTTTCTGAAAGAAGGCTTAAGCTGAGCAGTCAGATGTCGAAACTGAAGTACCAGCTGGAGTATGAGCAGAGGCGCGATACTGAGGCTCCAATCAAAAAATTAAATGCCTCTCTAATTACATTGGATGAGGAGCTTAAAAAAGTTCAAAATCAAGAGGCTGAAGCTAAATCAGCAATGGATGATGCCATACATCAGCTAGATGAAATTAAAAAGGAAGCTGAGGGGCAGAAATCAAAGGCAGATGAGTGCGAAAGTGTTATACAGGATCTGAAAAAGCAAGCTAGCAATGTCACAACGAATATTGGAAAACTGAAGCGCCAGATTTCTGCCAAGGAAACACAAATTGAACAGCTAAAATCTCGAAAGCAGGAGGTACTAGAGAACTGTGAACTGGAACAGATAAAACTTCCTACCTTAACCACTCCCATGGAAACAGATTCATCAGGACCTAGTTTTCCAACAAATTTTGATTACTCGAAGCTTAGCAGATCTCATCAACAGGATCTGAGGCCAGCTGACAGAGAGAAACTTGAAGCAGAATTTAAAAATAAAATGGATTCGATGACATCAGAAATAGAGAGAACAGCACCTAATTTGAAAGCATTAGATCAATATGAGGCTCTGCGTGAAAAGGAAAGAGAAGTAATTGAAGAGTTTGAAGCAGCTAGGAAAGAAGAGAAGGAAATAACTGACAAATATAATTCTGTAAAACAGAAGAGATATGAAACATTTATGGATGCATTCAACCACATATCAACAAACATTGATAAGATCTACAAACAGCTGACTCAGAGTAATACGCATCCTTTTGGAGGAACGGCATATCTGAGCCTGGAAAATGAAGATGACCCTTTCTTACATGGTATCAAGTACACAGCTATGCCTCCAACAAAGCGCTTCAGAGAAATGGAACAATTATCTGGAGGGGAAAAGACTGTTGCTGCTCTTGCTTTGTTGTTTGCTATCCATAGTTTCAGGCCTTCACCTTTTTTTGTTCTGGATGAAGTAGATGCAGCATTGGACAATTTGAACGTTGCTAAAGTTGCAGCTTTCATCAGATTGAAATCCCGTGATGAGAACAAGGATCAAGATAAAGATGGTGTTGGCTTTCAAAGTATAGTGATCTCTTTGAAAGATAATTTCTATGTTAAAGCTGACGCGTTGGTGGGAGTTTATAGGGATTCTGAAAGAAGCTGCTCCAGAACTCTAACATTTGACCTCAGCAAGTATGGTGATACATAAACTGTTGTAAATGGTATCAACATTTCTCTATGTAGTTTGAATTTTAAGTTCCAAATGACAAGTAAGATGTATTTTCTGAAAGTAATTTTCATTGACATTTTATGCCAATGGTAGTGTATATTTATCAAATTTCAGTATATGGAATTTGGTTTGTGCATGCAAGAATGAAATTGAGTTTACCAATTGATTGCTTATATGCT

Fln Alignment:

Contig490___HQQDLRPADREKLEAEFKNKMDSMTSEIERTAPNLKALDQYXXXXXXXXXXXXXXXXXXXXXXXXTDKYNSVKQKRYETFMDAFNHISTNIDKIYKQLTQSNTHPFGGTAYLSLENEDDPFLHGIKYTAMPPTKRFREMEQLSGGEKTVAALALLFAIHSFRPSPFFVLDEVDAALDNLNVAKVAAFIRLKSRDENKDQDKDGVGFQSIVISLKDNFYVKADALVGVYRDSERSCSRTLTFD
D5A9A1_____________NEQLLQPCSLETA----MEKVALFEAQLKESKPSLDAIQEYRNKAALYNERVQELNTVTQERDDLKKQRDELRKKRLDEFMAGFNTISLKLKEMYQMIT------LGGDAELELVDSLDPFAEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDASLDFKNVSIVGHYI--------KDRTKDA---QFIIISLRNNMFELADRLIGIYKTD--NCTKSVTID

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1709		66	33		0.997452
1710	66		33		0.997452
1769	33			66	1.0
1953	12	87			0.992554
1955			12	87	0.992554
1956			87	12	0.992554
1985	25		75		1.0
1992			25	75	1.0
2000	50			50	1.0
2199		12		87	0.992554
2229		85		14	0.993533
2408	50	50			1.0
2417		60		40	1.0
2585	66		33		1.0
2732		33	66		1.0
2740	10			90	0.90298
2741		10		90	0.90298
2742	10	90			0.90298
2744			90	10	0.90298
2762	50	50			1.0
2814	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain