SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene444

Length: 2025 nt

UniGene Fasta

>sp_v3.0_unigene444
TGGCGAAGCTCCATTTTCCCCCATTTTCAACACTCCCATCCACGCCCTCACATATACATATGCTTGACAACCCCTACGATCCCAGCAGATATCCACACTCTTATTATTCCTGCAGCTTTCATCACAGAGAGACCCAACATTTTCCCAATCTTCTTTCCAAAAGGTTTCACAAATATCCAAATGCGCTTAAAAATGGCACAGGTTCTCCAGGTATCTCACAGGAAGATGACTGCCATAAACTGGTTCACAGTCCAGAGCATGAAGGAGGGGAGCTCAGCTCCTCTGCAATGGCCATCGCAATGTCAATTCAAAGGGTATCTGACTGCCCTGTTAAATTCGCGCAGAGAGTAGAGAAGGTGGGCAGAGGGGTTTTTTCTTGTCCCAGTGCTGAATTCAGGAGCCTCTGCAATGAACAGCTCTCGCTGTGTGCAAATATTATCAGGAAGGACACTATTCTATCGTTATATATACGACCTGCTGGAAGTTATGTAACAGACCAATTAGAGCTAAGACAAGCTGCTATATATCCTGGACAAGAATTAGCAGAGCAAGATGATATACTAGTCTTGGTTGGAACATTTGGCACACAAGCAAGTTTACGCTCGGCTGAAGCAGCATTTGCTGAACGACAAGTGGAGGACATACCAGAACATAATGTGCTTGTTGTACCAATGATTAAAGACTTATTCTTGGTCGGGTTGCTTGTGGCAGAGCATGCAAGCATTGATCCTGGAAGCATTTGGTCACCTGGAAAAGAAGTTGAACAGTCGTCCTCTGCTTTGGGAATGAAGAAAGAGAAAATAGAGCCTTTTCAGCAAGACAAACAGATGACATTACCCTCCTCCTTTACCACAGAACAAAAAGCACAGGCAATTAAAATTGCACGCACGCTAGCTGTAGCCTATGTAATGGATCAGAGAGCACTATTACTGCAGCAAACGTCTTGGCAGAAAGGCGTAAGAATGAGCAATCTCATGGAGCAAATTCATGGACCTCTTTCCAATATCAGGACACTAAGCAAAATGCTAATACCACATCTGAAGAGAAGTGAGATACCACATGATCTATTGGAAAATATACTAGTGCAAGGGGAACATATGAAAGGTCTCCTACAGGAATTGCAAGATGCCTTTTACTACACCAAGGCCAATTTAATTCATTTCCGAGAAGAGGATCTGAATAGAATCCAAAGAGTTCGTTCAAATCCTTTCTCAAGGCTAGGACGTGCATTCTCTGACTATGATGACCATGCAAAAAGCACTGCATTCTCTTTGGGGTCGAAAATAAGAGAAGATTTGGAATTTCCCATGCCTCCTCTTGCTCTTGCAGCATTACAACAATCTAATATCAGGCCTTGCAATGTGTCTAAGCTCTTATCAGAACTGGTGAATGCTGGAGATGCTTTAGCTCACAGCCAGCAGCAAACATTGCAGTTGATAGAAAGCACTCCTTTATTGCAAGCTGCAATTGAAGAAACTGCATTACGGCAAGCATTAAGTAATTTATTGGACAGTGCATTGCTGCGAGTACCAGGAGGTGGTTGGGTGAAGGTTGAAGCTACAGAAGCTCCAGGAGGCGGAGTGCTTGTGGTGATTGATGACAATGGACCTGATATGAGTTTAATGACTCAAACACATTCTCTGGCTCCATTTGGGTCAGAACTCTCTTTGGAAGCTAGAGCTCAAGACAATATTGCATGGAACTTTGTAGCTGGAATAACTATTGCTCGGGAAATTTTGGAACATTATGGTAGTGTCCTTCGTATGTTGTCTCCTTATTTACCGAATGCATTGTTAGGGGCAGGAGGAACACATATTGAAGTTTGGTTGCCTGCAATTCCTGTTGAGGGAGCTAAATAGATGTAAGTGCCGAGGATAAGGTGTAGACAGTGACTGATGTAAGTGGATACTGCTTTATTGGTGCAGAATGTTAAATTTGTATTAATCCTTTGTAAAATATATGAATGTAAAAATTAGTTGGGTTCCCCTATGTAGCTGCTCGTCATATTCTTCAGTTTTTTGTTTC

Ace file of the UniGene sp_v3.0_unigene444

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SVM1_RICCO	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	Gene names
Sma3	At1g67840; GSVIVT00030763001; GSVIVT00030764001; Os12g0292900; OsI_38049; OsJ_35821; POPTRDRAFT_821872; RCOM_0794020; VITISV_010592;

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	regulation of gene expression	GO:0010468	Biological Process	-
Sma3	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	photosystem stoichiometry adjustment	GO:0080005	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67840.1	CSK chloroplast sensor kinase chr1:25434156-25436839 FORWARD LENGTH=611	48%
RefSeq	Arabidopsis thaliana	NP_564908.1	chloroplast sensor kinase [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002315662.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAI4

Fln msg: your sequence is longer than subject: 600 - 316

Fln protein: MLDNPYDPSRYPHSYYSCSFHHRETQHFPNLLSKRFHKYPNALKNGTGSPGISQEDDCHKLVHSPEHEGGELSSSAMAIAMSIQRVSDCPVKFAQRVEKVGRGVFSCPSAEFRSLCNEQLSLCANIIRKDTILSLYIRPAGSYVTDQLELRQAAIYPGQELAEQDDILVLVGTFGTQASLRSAEAAFAERQVEDIPEHNVLVVPMIKDLFLVGLLVAEHASIDPGSIWSPGKEVEQSSSALGMKKEKIEPFQQDKQMTLPSSFTTEQKAQAIKIARTLAVAYVMDQRALLLQQTSWQKGVRMSNLMEQIHGPLSNIRTLSKMLIPHLKRSEIPHDLLENILVQGEHMKGLLQELQDAFYYTKANLIHFREEDLNRIQRVRSNPFSRLGRAFSDYDDHAKSTAFSLGSKIREDLEFPMPPLALAALQQSNIRPCNVSKLLSELVNAGDALAHSQQQTLQLIESTPLLQAAIEETALRQALSNLLDSALLRVPGGGWVKVEATEAPGGGVLVVIDDNGPDMSLMTQTHSLAPFGSELSLEARAQDNIAWNFVAGITIAREILEHYGSVLRMLSPYLPNALLGAGGTHIEVWLPAIPVEGAK*

Protein Length: 601

Fln nts: TGGCGAAGCTCCATTTTCCCCCATTTTCAACACTCCCATCCACGCCCTCACATATACAT_-_ATGCTTGACAACCCCTACGATCCCAGCAGATATCCACACTCTTATTATTCCTGCAGCTTTCATCACAGAGAGACCCAACATTTTCCCAATCTTCTTTCCAAAAGGTTTCACAAATATCCAAATGCGCTTAAAAATGGCACAGGTTCTCCAGGTATCTCACAGGAAGATGACTGCCATAAACTGGTTCACAGTCCAGAGCATGAAGGAGGGGAGCTCAGCTCCTCTGCAATGGCCATCGCAATGTCAATTCAAAGGGTATCTGACTGCCCTGTTAAATTCGCGCAGAGAGTAGAGAAGGTGGGCAGAGGGGTTTTTTCTTGTCCCAGTGCTGAATTCAGGAGCCTCTGCAATGAACAGCTCTCGCTGTGTGCAAATATTATCAGGAAGGACACTATTCTATCGTTATATATACGACCTGCTGGAAGTTATGTAACAGACCAATTAGAGCTAAGACAAGCTGCTATATATCCTGGACAAGAATTAGCAGAGCAAGATGATATACTAGTCTTGGTTGGAACATTTGGCACACAAGCAAGTTTACGCTCGGCTGAAGCAGCATTTGCTGAACGACAAGTGGAGGACATACCAGAACATAATGTGCTTGTTGTACCAATGATTAAAGACTTATTCTTGGTCGGGTTGCTTGTGGCAGAGCATGCAAGCATTGATCCTGGAAGCATTTGGTCACCTGGAAAAGAAGTTGAACAGTCGTCCTCTGCTTTGGGAATGAAGAAAGAGAAAATAGAGCCTTTTCAGCAAGACAAACAGATGACATTACCCTCCTCCTTTACCACAGAACAAAAAGCACAGGCAATTAAAATTGCACGCACGCTAGCTGTAGCCTATGTAATGGATCAGAGAGCACTATTACTGCAGCAAACGTCTTGGCAGAAAGGCGTAAGAATGAGCAATCTCATGGAGCAAATTCATGGACCTCTTTCCAATATCAGGACACTAAGCAAAATGCTAATACCACATCTGAAGAGAAGTGAGATACCACATGATCTATTGGAAAATATACTAGTGCAAGGGGAACATATGAAAGGTCTCCTACAGGAATTGCAAGATGCCTTTTACTACACCAAGGCCAATTTAATTCATTTCCGAGAAGAGGATCTGAATAGAATCCAAAGAGTTCGTTCAAATCCTTTCTCAAGGCTAGGACGTGCATTCTCTGACTATGATGACCATGCAAAAAGCACTGCATTCTCTTTGGGGTCGAAAATAAGAGAAGATTTGGAATTTCCCATGCCTCCTCTTGCTCTTGCAGCATTACAACAATCTAATATCAGGCCTTGCAATGTGTCTAAGCTCTTATCAGAACTGGTGAATGCTGGAGATGCTTTAGCTCACAGCCAGCAGCAAACATTGCAGTTGATAGAAAGCACTCCTTTATTGCAAGCTGCAATTGAAGAAACTGCATTACGGCAAGCATTAAGTAATTTATTGGACAGTGCATTGCTGCGAGTACCAGGAGGTGGTTGGGTGAAGGTTGAAGCTACAGAAGCTCCAGGAGGCGGAGTGCTTGTGGTGATTGATGACAATGGACCTGATATGAGTTTAATGACTCAAACACATTCTCTGGCTCCATTTGGGTCAGAACTCTCTTTGGAAGCTAGAGCTCAAGACAATATTGCATGGAACTTTGTAGCTGGAATAACTATTGCTCGGGAAATTTTGGAACATTATGGTAGTGTCCTTCGTATGTTGTCTCCTTATTTACCGAATGCATTGTTAGGGGCAGGAGGAACACATATTGAAGTTTGGTTGCCTGCAATTCCTGTTGAGGGAGCTAAATAG___ATGTAAGTGCCGAGGATAAGGTGTAGACAGTGACTGATGTAAGTGGATACTGCTTTATTGGTGCAGAATGTTAAATTTGTATTAATCCTTTGTAAAATATATGAATGTAAAAATTAGTTGGGTTCCCCTATGTAGCTGCTCGTCATATTCTTCAGTTTTTTGTTTC

Fln Alignment:

Contig444___MDQRALLLQQTSWQKGVRMSNLMEQIHGPLSNIRTLSKMLIPHLKRSEIPHDLLENILVQGEHMKGLLQELQDAFYYTKANLIHFREEDLNRIQRVRSNPFSRLGRAFSDYDDHAKSTAFSLGSKIREDLEFPMPPLALAALQQSNIRPCNVSKLLSELVNAGDALAHSQQQTLQLIESTPLLQAAIEETALRQALSNLLDSALLRVPGGGWVKVEATEAPGGGVLVVIDDNGPDMSLMTQTHSLAPFGSELSLEARAQDNIAWNFVAGITIAREILEHYGSVLRMLSPYLPNALLGAGGTHIEVWLPAIPVEGAK
D5AAI4_____________MDQRALLLQQTSWQKGVRMSNLMEQIHGPLSNIRTLSKMLIPHLKRSEIPHDLLENILVQGEHMKGLLQELQDAFYYTKANLMHFREEDLNRIQRVRSNPFSRLGHAFSDYDYNAKSTAFSLGSTVREDLELPMPPLALAALQQSNVRPCNVSKLLSDLVNAGDALAHSQQQTLQLIECTPLLQAAIEETALRQALSNLLDSALLRVPGGGWVKVEATEAPGGGVLVVIDDNGPDMSLMTQTHSLAPFGSELSLEDRAQDNVAWNFVAGITIAREILEHYGSVLRMLSPYLPNALLGAGGTHIEIWLPAVPAEGTK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1574	75			25	0.996473
1867		40		60	1.0
1920			75	25	0.996473
1943		25		75	0.996473
1956	75			25	0.996473
1959	75			25	0.996473
1960	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain