SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene439

Length: 2213 nt

UniGene Fasta

>sp_v3.0_unigene439
ATATATTCAAATACCTACAGGCTCCCATATTAGTGCCCATCGTCGGTTTCATCTATTCCAAAGGAAGGGGAGGGCATTTGATATTTGGAGTTGCAGAGGTGCAAAGCATGGCTATGGCAATGGCGACCATGCGAAAAATCTCCAGTTCAGCCTTGTTTAGGCCCGGATCGGCTATGCTACAAAGAGCTCTGCAATCTACTGTTGCTCTTTCCAACGAGGCCGACTACTCTCGTCTCGAAAAACAAAAGTCCCATGTCACTTGGCCAAAGCAGCTGAATGCTCCACTGGAGGAGGTCGATCCCGAGATTGCGAATATCATAGAACTTGAAAAAAATCGACAATGGAAGGGCCTTGAACTTATCCCTTCAGAGAACTTTACTTCATTATCAGTCATGCAGGCTGTAGGATCAGTCATGACCAATAAATACAGTGAAGGCTATCCTGGTGCAAGATACTATGGAGGAAATGAATTCATTGACATGGCAGAGTCGTTATGTCAGAAAAGAGCATTGGAAGCATTTGGTTTGGATCCAGATAAATGGGGAGTTAATGTACAACCCTTGTCAGGCTCTCCAGCTAATTTTCAAGTTTACACTGCTTTGTTGAAGCCCCATGATCGTATCATGGCACTTGATCTTCCACATGGTGGTCATCTGTCTCATGGTTACCAGACCGATACTAAAAAGATCTCAGCAGTTTCAATTTTCTTTGAAACAATGCCTTATAGATTGGATGAATCTACAGGCTATATTGATTATGACCAGCTGGAGAAAAGTGCAGTCCTCTTCAGGCCTAAACTCATTGTTGCTGGTGCTAGTGCTTATGCACGCCATTATGACTATGCTCGGATGCGCAAGGTTTGTGACAAGCAAAAAGCTGTGTTGTTGGCGGACATGGCACACATAAGTGGACTTGTTGCAGCTGGTGTAGTTCCATCTCCTTTTGAGTTTGCAGATGTAGTGACAACTACTACACACAAGTCACTCCGTGGTCCTCGTGGTGCAATGATATTTTATAGAAAGGGCATCAAAGAAATTAACAAGCAGGGGCAAGAGGTTAAATATGACTATGAGGAAAAGATTAATGCAGCTGTGTTCCCTGGTCTTCAAGGTGGTCCTCACAATCATACCATAACTGGCTTAGCTGTTGCTCTTAAACAGGCAACTACCTCAGAGTATAAAGCATATCAAGAGCAGGTTCTCAGTAATTGTGCTCATTTTGCTAAGTGTCTAAGTGAAAGAGGCTATGAACTTGTTTCGGGTGGAACAGACAACCACTTGGTCTTGGTGAACTTAAAGAATAGGGGAATTGATGGTTCCAGGGTTGAAAGGGTACTGGAATTGGTTCACATTGCAGCTAATAAAAATACAGTTCCTGGGGATATTTCTGCAATGGTTCCTGGTGGAATTCGCATGGGGACACCAGCTTTGACATCCAGAGGCTTCGTCGAGGATGATTTTGCAAAAGTAGCAGAATTTTTTGATCTTGCTACTCAACTAGCCATTAGAATCAAGTCTGAAACAAAGGGTGGTTCAAAGCTGAAGGACTTCAAAGCTACAATCGAAAGCAGCCCACACTTCCAAGCTGAAATTGCAAGCCTTAGACACAATGTTGAGGAGTATGCAAAGCAGTTTCCAACAATTGGGTTTGAGAAAACATCTTTGAAATACAAAGATTGAAGACTTGTAAAAATATGCATTCTGGGTCGTATCTCCTAAATTTCAAGGGAGTTACAGACCAGCTTTGATTTTCATCATATGAAATTTCTTTGATCTCCATTGTTATGTCCTGTACTCTATTGAATGTAAAGAAGCCGACCGATTCATTATATAGCGCAAGATGGTAGGGTTTAGGTTGCCTTGGATTTGGAAGAAAAGTAATAGAGTGCCATGCCAATGAAAAGAGAAGGCCTTTGCTAAGCAAAATTAATTCTCTATCCTGTTTATTGAAATCCGAAAGAGATGTGATCACTTTTTCATAGTGGAGGATAACTAGTCTTTTTGTTGAGACCACTTTACGTGTTCCTTTTCAATTGTGTATCTTCTTTCTCTAATTTCATGATATGAAAGGTTGAAATGGTATTTGGAAAAATTCTCAGCCTATTTGGCTATTACGTTTTTCTTATTGCTGGTTTGATGTGTCATTGATCTCTGATTTTATCCAGAGATACAATTGCTCGGAACTGAAGGTTAAATAAAGTTTCGTGATTTACT

Ace file of the UniGene sp_v3.0_unigene439

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine hydroxymethyltransferase n=2 Tax=Picea sitchensis RepID=A9NUX0_PICSI	-	-	0.0	85%
FL-Next	sp=Serine hydroxymethyltransferase; Pinus pinaster (Maritime pine).	-	-	0.0	100%

Source	ECs	Term	Type	e value	Identity
Sma3	Glycine hydroxymethyltransferase.	EC:2.1.2.1	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glycine, serine and threonine metabolism	00260	%
Sma3	Cyanoamino acid metabolism	00460	%
Sma3	One carbon pool by folate	00670	%
Sma3	Methane metabolism	00680	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	GOs	Term	Type	Identity
Sma3	glycine hydroxymethyltransferase activity	GO:0004372	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	glycine metabolic process	GO:0006544	Biological Process	-
Sma3	L-serine metabolic process	GO:0006563	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Serine hydroxymethyltransferase	IPR001085	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G37930.1	SHM1, STM, SHMT1 serine transhydroxymethyltransferase 1 chr4:17831891-17834742 REVERSE LENGTH=517	81%
RefSeq	Arabidopsis thaliana	NP_195506.1	glycine hydroxymethyltransferase [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002315363.1	precursor of transferase serine hydroxymethyltransferase 7 [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: G3C8Z4

Fln msg:

Fln protein: MAMAMATMRKISSSALFRPGSAMLQRALQSTVALSNEADYSRLEKQKSHVTWPKQLNAPLEEVDPEIANIIELEKNRQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAESLCQKRALEAFGLDPDKWGVNVQPLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSAVLFRPKLIVAGASAYARHYDYARMRKVCDKQKAVLLADMAHISGLVAAGVVPSPFEFADVVTTTTHKSLRGPRGAMIFYRKGIKEINKQGQEVKYDYEEKINAAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNCAHFAKCLSERGYELVSGGTDNHLVLVNLKNRGIDGSRVERVLELVHIAANKNTVPGDISAMVPGGIRMGTPALTSRGFVEDDFAKVAEFFDLATQLAIRIKSETKGGSKLKDFKATIESSPHFQAEIASLRHNVEEYAKQFPTIGFEKTSLKYKD*

Protein Length: 525

Fln nts: ATATATTCAAATACCTACAGGCTCCCATATTAGTGCCCATCGTCGGTTTCATCTATTCCAAAGGAAGGGGAGGGCATTTGATATTTGGAGTTGCAGAGGTGCAAAGC_-_ATGGCTATGGCAATGGCGACCATGCGAAAAATCTCCAGTTCAGCCTTGTTTAGGCCCGGATCGGCTATGCTACAAAGAGCTCTGCAATCTACTGTTGCTCTTTCCAACGAGGCCGACTACTCTCGTCTCGAAAAACAAAAGTCCCATGTCACTTGGCCAAAGCAGCTGAATGCTCCACTGGAGGAGGTCGATCCCGAGATTGCGAATATCATAGAACTTGAAAAAAATCGACAATGGAAGGGCCTTGAACTTATCCCTTCAGAGAACTTTACTTCATTATCAGTCATGCAGGCTGTAGGATCAGTCATGACCAATAAATACAGTGAAGGCTATCCTGGTGCAAGATACTATGGAGGAAATGAATTCATTGACATGGCAGAGTCGTTATGTCAGAAAAGAGCATTGGAAGCATTTGGTTTGGATCCAGATAAATGGGGAGTTAATGTACAACCCTTGTCAGGCTCTCCAGCTAATTTTCAAGTTTACACTGCTTTGTTGAAGCCCCATGATCGTATCATGGCACTTGATCTTCCACATGGTGGTCATCTGTCTCATGGTTACCAGACCGATACTAAAAAGATCTCAGCAGTTTCAATTTTCTTTGAAACAATGCCTTATAGATTGGATGAATCTACAGGCTATATTGATTATGACCAGCTGGAGAAAAGTGCAGTCCTCTTCAGGCCTAAACTCATTGTTGCTGGTGCTAGTGCTTATGCACGCCATTATGACTATGCTCGGATGCGCAAGGTTTGTGACAAGCAAAAAGCTGTGTTGTTGGCGGACATGGCACACATAAGTGGACTTGTTGCAGCTGGTGTAGTTCCATCTCCTTTTGAGTTTGCAGATGTAGTGACAACTACTACACACAAGTCACTCCGTGGTCCTCGTGGTGCAATGATATTTTATAGAAAGGGCATCAAAGAAATTAACAAGCAGGGGCAAGAGGTTAAATATGACTATGAGGAAAAGATTAATGCAGCTGTGTTCCCTGGTCTTCAAGGTGGTCCTCACAATCATACCATAACTGGCTTAGCTGTTGCTCTTAAACAGGCAACTACCTCAGAGTATAAAGCATATCAAGAGCAGGTTCTCAGTAATTGTGCTCATTTTGCTAAGTGTCTAAGTGAAAGAGGCTATGAACTTGTTTCGGGTGGAACAGACAACCACTTGGTCTTGGTGAACTTAAAGAATAGGGGAATTGATGGTTCCAGGGTTGAAAGGGTACTGGAATTGGTTCACATTGCAGCTAATAAAAATACAGTTCCTGGGGATATTTCTGCAATGGTTCCTGGTGGAATTCGCATGGGGACACCAGCTTTGACATCCAGAGGCTTCGTCGAGGATGATTTTGCAAAAGTAGCAGAATTTTTTGATCTTGCTACTCAACTAGCCATTAGAATCAAGTCTGAAACAAAGGGTGGTTCAAAGCTGAAGGACTTCAAAGCTACAATCGAAAGCAGCCCACACTTCCAAGCTGAAATTGCAAGCCTTAGACACAATGTTGAGGAGTATGCAAAGCAGTTTCCAACAATTGGGTTTGAGAAAACATCTTTGAAATACAAAGATTGA___AGACTTGTAAAAATATGCATTCTGGGTCGTATCTCCTAAATTTCAAGGGAGTTACAGACCAGCTTTGATTTTCATCATATGAAATTTCTTTGATCTCCATTGTTATGTCCTGTACTCTATTGAATGTAAAGAAGCCGACCGATTCATTATATAGCGCAAGATGGTAGGGTTTAGGTTGCCTTGGATTTGGAAGAAAAGTAATAGAGTGCCATGCCAATGAAAAGAGAAGGCCTTTGCTAAGCAAAATTAATTCTCTATCCTGTTTATTGAAATCCGAAAGAGATGTGATCACTTTTTCATAGTGGAGGATAACTAGTCTTTTTGTTGAGACCACTTTACGTGTTCCTTTTCAATTGTGTATCTTCTTTCTCTAATTTCATGATATGAAAGGTTGAAATGGTATTTGGAAAAATTCTCAGCCTATTTGGCTATTACGTTTTTCTTATTGCTGGTTTGATGTGTCATTGATCTCTGATTTTATCCAGAGATACAATTGCTCGGAACTGAAGGTTAAATAAAGTTTCGTGATTTACT

Fln Alignment:

Contig439___MAMAMATMRKISSSALFRPGSAMLQRALQSTVALSNEADYSRLEKQKSHVTWPKQLNAPLEEVDPEIANIIELEKNRQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAESLCQKRALEAFGLDPDKWGVNVQPLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSAVLFRPKLIVAGASAYARHYDYARMRKVCDKQKAVLLADMAHISGLVAAGVVPSPFEFADVVTTTTHKSLRGPRGAMIFYRKGIKEINKQGQEVKYDYEEKINAAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNCAHFAKCLSERGYELVSGGTDNHLVLVNLKNRGIDGSRVERVLELVHIAANKNTVPGDISAMVPGGIRMGTPALTSRGFVEDDFAKVAEFFDLATQLAIRIKSETKGGSKLKDFKATIESSPHFQAEIASLRHNVEEYAKQFPTIGFEKTSLKYKD
G3C8Z4_____________MAMAMATMRKISSSALFRPGSAMLQRALQSTVALSNEADYSRLEKQKSHVTWPKQLNAPLEEVDPEIANIIELEKNRQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAESLCQKRALEAFGLDPDKWGVNVQPLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSAVLFRPKLIVAGASAYARHYDYARMRKVCDKQKAVLLADMAHISGLVAAGVVPSPFEFADVVTTTTHKSLRGPRGAMIFYRKGIKEINKQGQEVKYDYEEKINAAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNCAHFAKCLSERGYELVSGGTDNHLVLVNLKNRGIDGSRVERVLELVHIAANKNTVPGDISAMVPGGIRMGTPALTSRGFVEDDFAKVAEFFDLATQLAIRIKSETKGGSKLKDFKATIESSPHFQAEIASLRHNVEEYAKQFPTIGFEKTSLKYKD

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
55	66	33			0.997452
143		75		25	0.996473
185	77		22		0.999999
438		80		20	0.995493
447		16		83	0.994512
731	5		16	77	1.0
822		15		85	1.0
896	14			85	0.993533
898		14	85		0.993533
899		85	14		0.993533
906			14	85	0.993533
907	85		14		0.993533
908	85		14		0.993533
909	14		85		0.993533
988		80		20	0.995493
1072		16		83	0.994512
1132	12	87			0.992554
1135	87		12		0.992554
1136	87			12	0.992554
1321		28	71		1.0
1366	87	12			0.992554
1368	87			12	0.992554
1459		14		85	0.993533
1460	14			85	0.993533
1479	16			83	0.994512
1481			16	83	0.994512
1482			16	83	0.994512
1483			16	83	0.994512
1600		28		71	1.0
1686		80		20	0.995493
1693	80	20			0.995493
1710	80		20		0.995493
1901	94		3		0.964041
1920	76			24	1.0
1974	2			86	1.0
1978		4	2	93	0.983471
1983		5	94		0.999997
1997	20		79		1.0
2014	93			6	0.99903
2038		6		93	0.999453
2102		75		25	1.0
2106		25		75	1.0
2109	12		87		0.992554
2128	16			83	0.994512
2129		16	83		0.994512
2130	25	50			0.995533
2132			50	25	0.995533
2157		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain