SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene393

Length: 2471 nt

UniGene Fasta

>sp_v3.0_unigene393
GCTCTATCTGAGAAGCAGGCTGAGGTCTCAAATAACTTTAGTATAATGAAGAAAGAAAATACAGTTTCTAATGTAGGAAATGCTTTCAACCTGAAGAAGTCTGTTCCAACAAAGATAGAATGCTTTGAAGCAGTGGAAGAGAAGCTCAATGAATTGTTAGATGGCAAGGGTGGAATTTGTGGGGACAAGGATGTTGCAAAAGATTACTTGAAGCTATTACTTGTGATATCAGCATCTGGGAATACAGAGCATGGGGATGTTTCTCACAGCATAAAAGATGTTTCTATGGTACTGGACGCTGTTCTTCAGACAAGGTCAAAGACAGTTTTAATTGACATAATGAAGAAAAATGGTTTGCAAATGCTGCATAATATGCTGAAGCAGAATTGTAAGAACTACATCAAGACTCCACTAGTATGCAAACTGCTCAAGGTCATAGAATTTCTTGTAGAAAATGGTGTTCTTTTAGTTGAACCGATAAATTCACGGCCTGGTTGTAGAGCCAGTGAAAGCCTCAAGGCATTTGTATGTTCTTTGACAGGGCATGCTGATTCACAGGTTCAACAGATAGCTCAAAGACTTCTACATAACTGGATTCCTCACATTAAGAAAGATGCCGAAATTAAGGAAGGATTGAATTTGAATACAGATGGATTGATATTCAATGATTATGGAATGAATAATTGTAGGTTCTCAGACAAGCAATCAAAAATGGTTCCCAGACAAACAGACGCAATAGATTGCGTCAATCGGACACCAGTGGAGGAAGATATTGTCGCAGGTAGTCTTTTTTCTGGGTCAGATCAGTATGAGGTTAGCCATGGTGCTCATGAAGGTTTCCCTAGTCAGGATGACAGTGGGAAATTGAACAGAACAATTGCTCTGGATGGATGGAAGAGAGGGACAAAAGACCGAAAGAGGAAGAGCCGCTGGGATCAACCAACAGGGCTCATTACACGAGATAGTTCGTCTCAAACAAACTTGAGATGCGGAGAAACCAATGTAGAAAATGGGAAGGATTCTGGTTCTGTCATTTTTCAATGTGATAAAGAGAATAATGCCGAAACAGATCATGATGTATCCACTTCTGGTGGTAAATGGTCTTCTGAACAAAATCATGTGATCAATATTGATTGTCCAGGTACCTCTGTTCAGTTTGCCGTATCTTCTTGTCCACCTTCTGCAAACATGTGTATGTCAAAAGGGCCGGGGACATCTGGAAAAGAGCAGTCTTTGCCGTTTCCCATTCAACAAACGACGCAAATGCCTGGACGCGTAGATTCATGTGTTAGTTCCATCGGTACTGTACCATGCTCAACTGATATGCCTGCTACACAACCCCACATGATGGCTCCTCACATGAAGACTGTTTATGGATATCCAATGAAGTGCCAAGGCAATATGGTACCACATTGGCCACTTTCATATGGTATACCTATGCCCCTCTTGGTGAATCCTCCGAGATTGCCCACTCCATTACTTGATGGCATGTCTCAGCCTTTGTCAACTCATAGACCACATTGCCCATCCGGTAACAATCCAATTTCGTCGACTGTGATCCCAAATATGCACCCTTGTCCAAGGCAACCTGTTATGGGATGCTTTCCCCGGAATCCACAGCACCAATTGCAACCATTTAACATCCCCTTACCAATGCCATCAGCTGCTCGCCCACTGCAGAATGTGAGACAACCGCCTTTCCAAATGCATCCAGGACAGGCTGTTAGGCAGTGTGCATCTGATAATCCAGATTACATCGAGCCAGAGCCACCTGTACCAGGATTGTCCCCATCAAGATCAACAGAAACTCCATGCAATAGCAATTGGCCATTAAGAGGACGAAACAAGGTGGGCCATGGCCAAACAGGGAAGCCAGGCAAGAGGCCAGGGAAACAACAGAGGTTTAATTACCCAAGGTTCTCGAACTACAAAGGGCCCTTCGATAGAAAATTTAAGGATGGTTTCCCTCAGAAAAAACATCCATCGTTTAAGGCTACATGGAAAAACAGGATTTCTTCTAATTTTCATAAGGGCCCGCATCATCCACCGAATGAAAATAGTATTCATTTGCAAAATTTGCAACAAAATTCGGAGCATGTAAACACCACAAATTTCTCCGAGGGTGTAAGCAAGAATTTTTCTACATTCCATTGACGATAGATCTTTGCCATTTGTTATGCAAGCAATTTTTTATTGCTGTGTATCTTAGTATCATATGTATGAACTTGATATCCTTTCACTTCGAAGTATATCTCCTTTTTTGGTTTATCAATGACAAGCCAAATATCATTGTGTTTGTATAGCACATATCTGATGTAGTCCTTAAGTTGGAATTTGTGGTAATTAGAGTTGGAAACATAACATGGGAATGAGCATAACAAATAGAGCAACATTTTGCTAGTTTTGTAAGTACGTGGTGTTTTCTGGAACAAGCTTATTACGCTAATAGAATATATTATAATTCATAATTT

Ace file of the UniGene sp_v3.0_unigene393

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	huntingtin interacting protein, putative (EC:2.1.1.43)	-	-	3.0e-40	30%
FL-Next	Isoform 2 of Histone-lysine N-methyltransferase ASHH2 OS=Arabidopsis thaliana GN=ASHH2	-	-	0.0	37%
Sma3	SET domain protein	-	-	3.567e-07	-

Source	Gene names
Sma3	Os02g0554000; OsI_07633; OsJ_07116; P0470G10.13; POPTRDRAFT_204626; POPTRDRAFT_551417; SDG922; SDG923;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	AWS	IPR006560	-	-
Sma3	Zinc finger, CW-type	IPR011124	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002300966.1	SET domain protein [Populus trichocarpa]	4.0e-29	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q2LAE1-2

Fln msg: your sequence is shorter than subject: 718 - 1805

Fln protein: ALSEKQAEVSNNFSIMKKENTVSNVGNAFNLKKSVPTKIECFEAVEEKLNELLDGKGGICGDKDVAKDYLKLLLVISASGNTEHGDVSHSIKDVSMVLDAVLQTRSKTVLIDIMKKNGLQMLHNMLKQNCKNYIKTPLVCKLLKVIEFLVENGVLLVEPINSRPGCRASESLKAFVCSLTGHADSQVQQIAQRLLHNWIPHIKKDAEIKEGLNLNTDGLIFNDYGMNNCRFSDKQSKMVPRQTDAIDCVNRTPVEEDIVAGSLFSGSDQYEVSHGAHEGFPSQDDSGKLNRTIALDGWKRGTKDRKRKSRWDQPTGLITRDSSSQTNLRCGETNVENGKDSGSVIFQCDKENNAETDHDVSTSGGKWSSEQNHVINIDCPGTSVQFAVSSCPPSANMCMSKGPGTSGKEQSLPFPIQQTTQMPGRVDSCVSSIGTVPCSTDMPATQPHMMAPHMKTVYGYPMKCQGNMVPHWPLSYGIPMPLLVNPPRLPTPLLDGMSQPLSTHRPHCPSGNNPISSTVIPNMHPCPRQPVMGCFPRNPQHQLQPFNIPLPMPSAARPLQNVRQPPFQMHPGQAVRQCASDNPDYIEPEPPVPGLSPSRSTETPCNSNWPLRGRNKVGHGQTGKPGKRPGKQQRFNYPRFSNYKGPFDRKFKDGFPQKKHPSFKATWKNRISSNFHKGPHHPPNENSIHLQNLQQNSEHVNTTNFSEGVSKNFSTFH*

Protein Length: 719

Fln nts: GCTCTATCTGAGAAGCAGGCTGAGGTCTCAAATAACTTTAGTATAATGAAGAAAGAAAATACAGTTTCTAATGTAGGAAATGCTTTCAACCTGAAGAAGTCTGTTCCAACAAAGATAGAATGCTTTGAAGCAGTGGAAGAGAAGCTCAATGAATTGTTAGATGGCAAGGGTGGAATTTGTGGGGACAAGGATGTTGCAAAAGATTACTTGAAGCTATTACTTGTGATATCAGCATCTGGGAATACAGAGCATGGGGATGTTTCTCACAGCATAAAAGATGTTTCTATGGTACTGGACGCTGTTCTTCAGACAAGGTCAAAGACAGTTTTAATTGACATAATGAAGAAAAATGGTTTGCAAATGCTGCATAATATGCTGAAGCAGAATTGTAAGAACTACATCAAGACTCCACTAGTATGCAAACTGCTCAAGGTCATAGAATTTCTTGTAGAAAATGGTGTTCTTTTAGTTGAACCGATAAATTCACGGCCTGGTTGTAGAGCCAGTGAAAGCCTCAAGGCATTTGTATGTTCTTTGACAGGGCATGCTGATTCACAGGTTCAACAGATAGCTCAAAGACTTCTACATAACTGGATTCCTCACATTAAGAAAGATGCCGAAATTAAGGAAGGATTGAATTTGAATACAGATGGATTGATATTCAATGATTATGGAATGAATAATTGTAGGTTCTCAGACAAGCAATCAAAAATGGTTCCCAGACAAACAGACGCAATAGATTGCGTCAATCGGACACCAGTGGAGGAAGATATTGTCGCAGGTAGTCTTTTTTCTGGGTCAGATCAGTATGAGGTTAGCCATGGTGCTCATGAAGGTTTCCCTAGTCAGGATGACAGTGGGAAATTGAACAGAACAATTGCTCTGGATGGATGGAAGAGAGGGACAAAAGACCGAAAGAGGAAGAGCCGCTGGGATCAACCAACAGGGCTCATTACACGAGATAGTTCGTCTCAAACAAACTTGAGATGCGGAGAAACCAATGTAGAAAATGGGAAGGATTCTGGTTCTGTCATTTTTCAATGTGATAAAGAGAATAATGCCGAAACAGATCATGATGTATCCACTTCTGGTGGTAAATGGTCTTCTGAACAAAATCATGTGATCAATATTGATTGTCCAGGTACCTCTGTTCAGTTTGCCGTATCTTCTTGTCCACCTTCTGCAAACATGTGTATGTCAAAAGGGCCGGGGACATCTGGAAAAGAGCAGTCTTTGCCGTTTCCCATTCAACAAACGACGCAAATGCCTGGACGCGTAGATTCATGTGTTAGTTCCATCGGTACTGTACCATGCTCAACTGATATGCCTGCTACACAACCCCACATGATGGCTCCTCACATGAAGACTGTTTATGGATATCCAATGAAGTGCCAAGGCAATATGGTACCACATTGGCCACTTTCATATGGTATACCTATGCCCCTCTTGGTGAATCCTCCGAGATTGCCCACTCCATTACTTGATGGCATGTCTCAGCCTTTGTCAACTCATAGACCACATTGCCCATCCGGTAACAATCCAATTTCGTCGACTGTGATCCCAAATATGCACCCTTGTCCAAGGCAACCTGTTATGGGATGCTTTCCCCGGAATCCACAGCACCAATTGCAACCATTTAACATCCCCTTACCAATGCCATCAGCTGCTCGCCCACTGCAGAATGTGAGACAACCGCCTTTCCAAATGCATCCAGGACAGGCTGTTAGGCAGTGTGCATCTGATAATCCAGATTACATCGAGCCAGAGCCACCTGTACCAGGATTGTCCCCATCAAGATCAACAGAAACTCCATGCAATAGCAATTGGCCATTAAGAGGACGAAACAAGGTGGGCCATGGCCAAACAGGGAAGCCAGGCAAGAGGCCAGGGAAACAACAGAGGTTTAATTACCCAAGGTTCTCGAACTACAAAGGGCCCTTCGATAGAAAATTTAAGGATGGTTTCCCTCAGAAAAAACATCCATCGTTTAAGGCTACATGGAAAAACAGGATTTCTTCTAATTTTCATAAGGGCCCGCATCATCCACCGAATGAAAATAGTATTCATTTGCAAAATTTGCAACAAAATTCGGAGCATGTAAACACCACAAATTTCTCCGAGGGTGTAAGCAAGAATTTTTCTACATTCCATTGA___CGATAGATCTTTGCCATTTGTTATGCAAGCAATTTTTTATTGCTGTGTATCTTAGTATCATATGTATGAACTTGATATCCTTTCACTTCGAAGTATATCTCCTTTTTTGGTTTATCAATGACAAGCCAAATATCATTGTGTTTGTATAGCACATATCTGATGTAGTCCTTAAGTTGGAATTTGTGGTAATTAGAGTTGGAAACATAACATGGGAATGAGCATAACAAATAGAGCAACATTTTGCTAGTTTTGTAAGTACGTGGTGTTTTCTGGAACAAGCTTATTACGCTAATAGAATATATTATAATTCATAATTT

Fln Alignment:

Contig393___KSVPTKIECFEAVEEKLNELLDGKGGICGDKDVAKDYLKLLLVISASGNTEHGDVSHSIKDVSMVLDAVLQTRSKTVLIDIMKKNGLQMLHNMLKQNCKNYIKTPLVCKLLKVIEFLVENGVLLVEPINSRPGCRASESLKAFVCSLTGHADSQVQQIAQRLLHNWIP-HIKKDAEIKEGLNLNTDGLIFNDYGMNNCRFSDKQSKMVPRQTDAIDCVNRTPVEEDIVAGSLFSGSDQYEVSHGAHEGFPSQDDSGKLNRTIALDGWKRGTKDRKRKSRWDQPTGL----ITRDSSSQTNLRCGETNVENGKDSG
Q2LAE1-2___________EKVSPSIETFEG---KLNELLDAVGGISKRRDSAKGYLKLLLLTAASRGTDEEGI-YSNRDLSMILDALLKTKSKSVLVDIINKNGLQMLHNIMKQYRGDFKRIPIIRKLLKVLEYLATRKILALEHIIRRPPFAGMESFKDSVLSFTEHDDYTVHNIARSFRDRWIPKHFRKPWRI------NREERSESMRSPINRRFRASQEPRYDHQSP-------RPAEP---AASVTSSKAATPETASVSEGY-SEPNSGLPE-----------TNGRKRKSRWDQPSKTKEQRIMTILSQQTDETNGNQDVQDDLPPG

SNPs (tot: 77)

Position	A %	C %	G %	T %	Probability
787	33	66			0.997452
870		75		25	0.996473
871	75		25		0.996473
873	75		25		0.996473
1054	77	22			0.999999
1055	77		22		0.999999
1057	77	22			0.999999
1058	77		22		0.999999
1064			77	22	0.999999
1065	77			22	0.999999
1066	77		22		0.999999
1067	77		22		0.999999
1069	77			22	0.999999
1077		22	77		0.999999
1081	22			77	0.999999
1082	75			25	1.0
1133		12		87	0.992554
1135	87	12			0.992554
1136			12	87	0.992554
1139	12			87	0.992554
1142	87			12	0.992554
1146	87			12	0.992554
1190	12	87			0.992554
1248	87		12		0.992554
1301		88		11	0.923564
1344	11	88			0.923564
1345	88	11			0.923564
1370		11		88	0.923564
1522	87			12	0.992554
1552		85		14	0.993533
1610	16	83			0.994512
1611		83		16	0.994512
1614	83		16		0.994512
1673		83		16	0.994512
1692	16	83			0.994512
1693	83		16		0.994512
1694	83		16		0.994512
1695		83	16		0.994512
1737	16		83		0.994512
1798			71	28	1.0
1799	71		28		1.0
1800			28	71	1.0
1801		71	28		1.0
1827		14		85	0.993533
1898	87			12	0.992554
1899		87		12	0.992554
1900	87		12		0.992554
1902	87		12		0.992554
1975	90			10	0.90298
2022	83	16			0.999991
2023	83		16		0.999991
2025		16		83	0.999991
2026			16	83	0.999991
2028		83	16		0.999991
2030		16		83	0.999991
2031	83	16			0.999991
2032	83			16	0.999991
2033			83	16	0.999991
2037		83		16	0.999991
2038		83	16		0.999991
2039			83	16	0.999991
2089	84	15			0.999986
2090			15	84	0.999986
2096		15	84		0.999986
2098	84			15	0.999986
2101		15		84	0.999986
2102	84			15	0.999986
2103	84		15		0.999986
2104	84			15	0.999986
2107	7	76			0.999983
2109	84			15	0.999986
2111	75			8	0.99999
2264			33	66	1.0
2266			33	33	0.997753
2306	50	50			1.0
2362	70	30			1.0
2395			44	55	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain