SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene330

Length: 1999 nt

UniGene Fasta

>sp_v3.0_unigene330
TACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCGCAAGAGATTCCAAGGGCAATCAATACTTCTAAACAAGAATTGAGAACGCCCATATATGCATTCTGAGTCTCCTAGTGCTAGTGTGGAAGAGATTCCAGAGGCAATTCATTCTTCTAGTGAATAATTGAATTGGTTTTTATCTTCAATATTTCAATTGCAGAGGAGAACATACATTACAATGGGAGAACGGAGGGCTCTGTTGATCGTTCAAGCTCTGTTGATATTGATAATTAATGGTTATGTTGGATTAATTTCAGGAGACCAGATTCACCAAGGCAGATGGGAGCTTCTCCTGCAAAATGCGGGAGTTTCCGCAATGCATATGACGCTAACCCACACCAATAAGCTCATCATTTTCGATCAAACGCTTGCCGGTCCTTCGCAAATTATGAGAAGCGACCCACCCTGCAACAACGCCACCGCTGCCGCCTTGCAAGATTGCTGGGCACATTCCATCGAGTACGACATCGCCACGAACAGTGTGAGGCCTCTACACCTTCTCACCGACACTTTCTGTGCTTCGGTTGCTTTCGCCAGCAACGGTACACTTATTCAGACTGGAGGATGGAGCAATGGGGCAAGAGTTATTCGCTACTTCGCCCCATGCTCCGACGCCAGCTGCAACTGGTTTGAATCGCCGGCCCACCTAACTGCCAACCGATGGTACGCTTCGAACCAGATCTTGCCCGATGGTCGGGTCATAGTCGTAGGGGGGCGCAGATCGTTCAATTACGAATTCGTTCCGAAAGCCCCCTCTGATGGTGCCTTCCAGCTCCCATTCCTCGCGAAGACCAACACTGTGGGAGAGGAGAACAATCTCTATCCCTTCCTCCATCTCTCGTCAGACGGCAATCTCTTCATTTTCGCCAACAAGGATTCCATCCTCTTCGATTACAACAAAAACCAGGTACTCAAAACCTTCCCCACCATGCCTGGAGGTGGCGCCAGGAACTATCCTTCGTCTGGTTCTTCAGTAATGCTTCCCCTGGAGTCCCCTAATAATTTCCAGAAGGTGGAGATCCTAATCTGTGGAGGAGCCCCGGATGGAGCTTTTGAAAAGCTACTATGTAACCAGACGTTCGTGGAGGCGTTGAGGAGCTGCGGGAGAATGGAGATCACGTCTCAGAATCCGCAATGGGAGATGGAGGACATGCCCGGCCCCAGAGTCATGGGCGACATGCTCATTCTCCCCACTGCCCAGATTCTCATAATCAACGGTGCCAAAAATGGCATAGCCGGCTGGCAATCTGCCCGGGAGCCTGCATTGAGGCCGTTTCTCTACACACCCACAGAAGCATTGGGCGACAGGTTCAGAGTCCTGGCTCCCACTAAAATCCCGAGGATGTATCATTCCACTGCCAATGTTCTGCCCGACGGACGTGTTTTAGTAGCCGGGAGCAACTCAAACTATGGATATCGCTTCTCCGGTGTCCCGTTTCCCACGGAGCTGAGAGTGGAAGCATACATTCCTTACTATCTGCATCCCCATTACGATTCCAAGAGGGTGAACATCACTGCCATTTCTACGAGAGAGATCAAATGCGGGTCAAAATTCATTGTTCGCTTCTCTCTTTCGAGGAGGCCGAGCGAGAACATAAAATTTAATGCATACGCCCCTCCCTTCACAACGCACAGTTGGTCCATGAACCAGAGAATGCTCTCACTTGCAGCCACACCCATTGTCAAGGGTAAGCGCGGATATTTAGTTGGGTTGACGGCTCCACCAAGCACAGTGGCGGCACCTTCGGGGTATTATTTGTTTACCATTGTGAATGGAGGTGTGCCGAGCGAGGCGAAATGGATTCGATTCATCAGTTAAACGAGGTCTGAATCTTCATCAGCAAAGGTTAATTTCTCAAAAATGACACTGTAAAGCTGAGGCGATACCGCGCCAAAAATTATTTCTTTATATTTTAAAATGGTTAGTTATTGTATATCCTGTATCTAGTGTTTC

Ace file of the UniGene sp_v3.0_unigene330

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glyoxal oxidase-related protein [Arabidopsis thaliana] gb\|AAF43943.1\|AC012188_20 Weak similarity to glyoxal oxidase (glx2) from Phanerochaete chrysosporium gb\|L47287 [Arabidopsis thaliana] gb\|AEE29162.1\| glyoxal oxidase-related protein [Arabidopsis thalia	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	54%
Sma3	Glyoxal oxidase	-	-	2.048e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Galactose oxidase.	EC:1.1.3.9	-	4.331e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		4.331e-19	%

Source	Gene names
Sma3	AT3G53950; At1g19900; At1g67290; At1g75620; At3g53950; At3g53950/F5K20_250; At3g57620; At5g19580; B1144G04.6; F14L17.20; F15B8.190; F5K20_250; F6F9.4; GSVIVT00000516001; GSVIVT00014487001; GSVIVT00015939001; GSVIVT00016700001; GSVIVT00021405001; GSVIVT000

Source	GOs	Term	Type	e value	Identity
Sma3	galactose oxidase activity	GO:0045480	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Glyoxal oxidase, N-terminal	IPR009880	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G14430.1	glyoxal oxidase-related protein chr1:4934359-4936053 FORWARD LENGTH=564	48%
RefSeq	Arabidopsis thaliana	NP_172895.2	glyoxal oxidase-related protein [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002301997.1	predicted protein, partial [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: F6GTQ6

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 547 - 597

Fln protein: MGERRALLIVQALLILIINGYVGLISGDQIHQGRWELLLQNAGVSAMHMTLTHTNKLIIFDQTLAGPSQIMRSDPPCNNATAAALQDCWAHSIEYDIATNSVRPLHLLTDTFCASVAFASNGTLIQTGGWSNGARVIRYFAPCSDASCNWFESPAHLTANRWYASNQILPDGRVIVVGGRRSFNYEFVPKAPSDGAFQLPFLAKTNTVGEENNLYPFLHLSSDGNLFIFANKDSILFDYNKNQVLKTFPTMPGGGARNYPSSGSSVMLPLESPNNFQKVEILICGGAPDGAFEKLLCNQTFVEALRSCGRMEITSQNPQWEMEDMPGPRVMGDMLILPTAQILIINGAKNGIAGWQSAREPALRPFLYTPTEALGDRFRVLAPTKIPRMYHSTANVLPDGRVLVAGSNSNYGYRFSGVPFPTELRVEAYIPYYLHPHYDSKRVNITAISTREIKCGSKFIVRFSLSRRPSENIKFNAYAPPFTTHSWSMNQRMLSLAATPIVKGKRGYLVGLTAPPSTVAAPSGYYLFTIVNGGVPSEAKWIRFIS*

Protein Length: 548

Fln nts: TACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCGCAAGAGATTCCAAGGGCAATCAATACTTCTAAACAAGAATTGAGAACGCCCATATATGCATTCTGAGTCTCCTAGTGCTAGTGTGGAAGAGATTCCAGAGGCAATTCATTCTTCTAGTGAATAATTGAATTGGTTTTTATCTTCAATATTTCAATTGCAGAGGAGAACATACATTACA_-_ATGGGAGAACGGAGGGCTCTGTTGATCGTTCAAGCTCTGTTGATATTGATAATTAATGGTTATGTTGGATTAATTTCAGGAGACCAGATTCACCAAGGCAGATGGGAGCTTCTCCTGCAAAATGCGGGAGTTTCCGCAATGCATATGACGCTAACCCACACCAATAAGCTCATCATTTTCGATCAAACGCTTGCCGGTCCTTCGCAAATTATGAGAAGCGACCCACCCTGCAACAACGCCACCGCTGCCGCCTTGCAAGATTGCTGGGCACATTCCATCGAGTACGACATCGCCACGAACAGTGTGAGGCCTCTACACCTTCTCACCGACACTTTCTGTGCTTCGGTTGCTTTCGCCAGCAACGGTACACTTATTCAGACTGGAGGATGGAGCAATGGGGCAAGAGTTATTCGCTACTTCGCCCCATGCTCCGACGCCAGCTGCAACTGGTTTGAATCGCCGGCCCACCTAACTGCCAACCGATGGTACGCTTCGAACCAGATCTTGCCCGATGGTCGGGTCATAGTCGTAGGGGGGCGCAGATCGTTCAATTACGAATTCGTTCCGAAAGCCCCCTCTGATGGTGCCTTCCAGCTCCCATTCCTCGCGAAGACCAACACTGTGGGAGAGGAGAACAATCTCTATCCCTTCCTCCATCTCTCGTCAGACGGCAATCTCTTCATTTTCGCCAACAAGGATTCCATCCTCTTCGATTACAACAAAAACCAGGTACTCAAAACCTTCCCCACCATGCCTGGAGGTGGCGCCAGGAACTATCCTTCGTCTGGTTCTTCAGTAATGCTTCCCCTGGAGTCCCCTAATAATTTCCAGAAGGTGGAGATCCTAATCTGTGGAGGAGCCCCGGATGGAGCTTTTGAAAAGCTACTATGTAACCAGACGTTCGTGGAGGCGTTGAGGAGCTGCGGGAGAATGGAGATCACGTCTCAGAATCCGCAATGGGAGATGGAGGACATGCCCGGCCCCAGAGTCATGGGCGACATGCTCATTCTCCCCACTGCCCAGATTCTCATAATCAACGGTGCCAAAAATGGCATAGCCGGCTGGCAATCTGCCCGGGAGCCTGCATTGAGGCCGTTTCTCTACACACCCACAGAAGCATTGGGCGACAGGTTCAGAGTCCTGGCTCCCACTAAAATCCCGAGGATGTATCATTCCACTGCCAATGTTCTGCCCGACGGACGTGTTTTAGTAGCCGGGAGCAACTCAAACTATGGATATCGCTTCTCCGGTGTCCCGTTTCCCACGGAGCTGAGAGTGGAAGCATACATTCCTTACTATCTGCATCCCCATTACGATTCCAAGAGGGTGAACATCACTGCCATTTCTACGAGAGAGATCAAATGCGGGTCAAAATTCATTGTTCGCTTCTCTCTTTCGAGGAGGCCGAGCGAGAACATAAAATTTAATGCATACGCCCCTCCCTTCACAACGCACAGTTGGTCCATGAACCAGAGAATGCTCTCACTTGCAGCCACACCCATTGTCAAGGGTAAGCGCGGATATTTAGTTGGGTTGACGGCTCCACCAAGCACAGTGGCGGCACCTTCGGGGTATTATTTGTTTACCATTGTGAATGGAGGTGTGCCGAGCGAGGCGAAATGGATTCGATTCATCAGTTAAACGAGGTCTGAATCTTCATCAGCAAAGGTTAATTTCTCAAAAATGACACTGTAAAGCTGAGGCGATACCGCGCCAAAAATTATTTCTTTATATTTTAAAATGGTTAGTTATTGTATATCCTGTATCTAGTGTTTC

Fln Alignment:

Contig330___QGRWELLLQNAGVSAMHMTLTHTNKLIIFDQTLAGPS----QIMRSDPPCNNATAAALQD--CWAHSIEYDIATNSVRPLHLLTDTFCASVAFASNGTLIQTGGWSNGARVIRYFAPCSDASCNWFESPAHLTANRWYASNQILPD-GRVIVVGGRRSFNYEFVPKAPSDG-AFQLPFLAKTNTVGEE-NNLYPFLHLSSDGNLFIFANKDSILFDYNKNQVLKTFPTMPGGGARNYPSSGSSVMLPLESPNNFQKVEILICGGAPDGAFEKLLCNQTFVEALRSCGRMEITSQNPQWEMEDMPGPRVMGDMLILPTAQILIINGAKNGIAGWQSAREPALRPFLYTPTEALGDRFRVLAPTKIPRMYHSTANVLPDGRVLVAGSNSNYGYRFSGVPFPTELRVEAYIPYYLHPHYDSKRVNITAI-----STREIKCGSKFIVRFSLSRRPSENIKFNAYAPPFTTHSWSMNQRMLSLAATPIVKGKRGYL-VGLTAPPSTVAAPSGYYLFTIVNGGVPSEAKWIRFI
F6GTQ6_____________KGKWQLLLNNTGVVGMHMALTHHGTVIIFDQIGVGQSGYGLRRRYNGTRCMN-TQHDLTDWSCFAHSVEYDMSLNKVRPLRLDTDPWCSSGSFLSNGTLLQTGGYGRGSRRIRYFRPCENGHCDWRQSKTLLSDDRWYASSQILPEKDRAIVVGGRQVFSYEFVPKLHSNHRSFDLPFLHRTTNKNEGGNNLYPFVHLSSDGNLFIFANRDSILFNYKRNRVVKSFPRIPGAGSRNYPSSGSSVILPLDHGDRFHKVEVMVCGGAASGAHQAAEQGK-FLKGLSSCGRMVITGNTHKWNMENMPGPRLLNDMLILPTGDILIINGAKRGCAGWKNAADPSLQPYLYKPKKTLGRRFSVLKSTKIARMYHSSAILTPDGRVLVAGSNPNNKYTFRNVRYPTELRLQAFVPAYMDRQYHNTRPGNVSIHYGSGTNGGVRYGEGFSVRFWLGKKPSKTVEFSAYAPPFTTHSISMNQRMLKLRCKSMVRGEGGWINAALEAPPSPNVAPSGYYMLTVINGGIPSISQWIRII

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
547	20	80			0.995493
550		80		20	0.995493
563			80	20	0.995493
568	20		80		0.995493
570		20		80	0.995493
589		20		80	0.995493
675	25			75	0.996473
806		33		66	0.997452
830		66		33	0.997452
843	66			33	0.997452
844		66		33	0.997452
848		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain