SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene319

Length: 2656 nt

UniGene Fasta

>sp_v3.0_unigene319
ATGAAGGTATAGGTGAAGAGGAGGAAGGTGAGGGGGAGGAGATGGAAGGTGAAGGTGAAGAAGAGGAAGTGGGTGAGGAACATGAAGGTGAAGAAGAGGAGGATGAGCAACATGAAGTTGTGAAGGAAAGACGCAAGCGAAAGGAATTTGAAGTATTTGTTGGTGGCCTTGACAAGGACGCTGCTGAAGAAGATCTGAGAAAAGTATTTAGTGAAGTTGGCGAAGTGGTTGAAATCCGACTTATGATGAATCCACAAACACAGAAAAACAAGGGATTTGCCTTTATACGTTATGCAAGTGTTGATCAAGCTAAGCGAGCTTGCACAGAACTCAAGAATCCACAGGTTAAGGGTAAAGTTTGTGGGGTTTCACCTAGCCAGGACAGTGACACACTTTTCTTGGGAAATATATGTAAGACATGGACTAAGGAAGCTCTAAGAGAGAAGTTGAAGAGCTTTGGCATTGATAATATTGAGGATTTAACTCTAGTTGAAGACCCTAAAGATGATGGAATGAATCGTGGCTTTGCCTTTCTAGAGTTCTCAGCTCGTTCAGATGCCATGAATGCATATAAACGGCTGCAGAAGAGAGATGTTGTTTTGGGTACTGATAAAACTGCAAAGGTGTCGTTTGCAGAGACATTTGTCGAGCCTGATGAAGAAGTTATGGCACAGGTTAAGACTGTATTTGTTGATGGGTTACCACCTTCCTGGGATGAGGATCGAATCAAAGAGCAATTTAAGAAATACGGTGATATCGAGAAAATTCAGTTGGCACGCAACATGCCTTCAGCTAGGCGGAGGGACTTTGGATTTGTTACTTTTTCAACCCATGATGCTGCAGTAGCATGTATAGATGGAGTTAATAACAATGGGCTTGGAGAAGGTGATAGTAAGGTGAAGGTGAAGGCTAGATTGTCAAAGCCTCATCAAAAAGGAAGATTATTAAAACACGGTGTTCGAGGTGGTTATAAGATTGGGCGTGGTCGTGGCAGTACACGTGGTGGCAGGGGCCCATGGGTTCGTGCTCCTGCCCATTTTGAGCCCCGGAGGTTTGGAGGTCGTGGTGGCCGTTTCATTAGACGAGGAGGTCAAGTTGCAGGTCGTGGAGTAAAGCGTCCTCTGGGGCGCAATGCATATCCACCTGTACCAGAGAGACTCCCAAGTAGGCATTTGCCACCCTATGAAAGGGTACGAGATAGGCGCCCGCCAGCTCCGGCATATCCAAGAGGTAATGCAAGGAGGGATTATGGAAGACGAGACGAACCTTATGATGATCGTCAAGTGCGACCTAGTCGATCAGCTTCTGATTTTGCTACTCGTGCTGCTGCGGGAAGGCGGTCATCCTATAGAGATAGTTATGCAAATCGTGGGCCTAGCAGCTATTCAGACAGTGCACCTCCTCGAGGGGTGGAAAGGACTGCATCACGTAGACCTGCCTATCCAGAAGAAAGCTATGGTCGACGCATGGATAAGCCTTATCGTGATAGCCGTGGTCGTGATTATGACAATGTTTCTGGATCAAAACGTCCATATTCAGCAGTGGAAGAACCATCTAGATATGGAGAACCTCCTATGAGAAACTCGAGGGCTCGTTTGGAATATGGTGTCAGTGCTAGTGCATCGCAGTATGGTGACTATGGTGATTCCACTAGACTTGGGAGAGGCTCCCAGCTAGGCTATGGGGGTAGTGCTAGACAGGATTCATATGGCTTATATGATGGACACCAATCTAGTGTGGGTTATGGAGGAAGTAAAACGTACGGTTCTCTTGGGGGCAGTGATGCTGGTGGAACATATTCCAGCTATGGCAATGATTACTTGTCCGGTGGAACTGATATTGGTAGCGGTTCATATTCATCTCTATATTCAAGCCGTAATATGGGAGGTGGATACTTATCCGGCAGTGGTTCAGGATCTTATTATTAAATTATCTGTGTTCACGAGGATGTTGTAGTCTAGTTTCTACCAATCAATACCAAGTCTTCAGCTATTATTACTAAAGGAGGCCTCTTTGATTTGAGTGTTAATGGATGGATGTAAGTGGGCACCATACAACTAGACAAGCTGCAGCTTAAAAGTTTTTAAGAGATTAATGAAGGTGGCATTGTATGGTGGAAGATTTTTGGTTTCCTGATGTGAATGAAATATACAGGTGGGAGATGAAAGCAGACAATTGTTGTTTACATGTAGCTGAGATTTATATTTTGATAACACTGAATATATTTTAATTTGGGAAGTTGAGAGCACTGAATTTAATTGTCTTATTTAATGGTAACTCTGTATTGAGAAGACATGATTTGAAGGATTTTAGCTACACGAGAGATAAGGGAACATAACTGTTCAGATGACAGACAAGAAATTTTATATTGAGTTGAATGGTAAAATGGAGAGAAATTATATATTGAGTTGAATAGTCAAATGGATTGCAATATGCTAGAGTCTCTCTTAGTATTTTAGTGTATGACTGGTACTGGCTTCAACCAGGTTGATGGAAAAATATGCATTACGCAACTCATGCATCATCGATCTAGAACATCTAATAATTTGTGTTTTAAGTTGATGCACTTTTCTACTATGGAAATTCTTTAGAAGGCAATATGGACTGCATTTTAGCTAGGTGGAGTAACTTGGAAGTGGCCGTTGTGCACGTGTAG

Ace file of the UniGene sp_v3.0_unigene319

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif-containing protein [Arabidopsis thaliana] gb\|AAM10328.1\| At2g44720/F16B22.21 [Arabidopsis thaliana] gb\|AAN18203.1\| At2g44720/F16B22.21 [Arabidopsis thaliana] gb\|AEC10458.1\| RNA recognition motif-containing protein [Arabidopsis thalia	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Putative uncharacterized protein At2g44720	-	-	5.669e-09	-

Source	Gene names
Sma3	At2g44710; At2g44720; GSVIVT00006155001; GSVIVT00019044001; GSVIVT00027062001; GSVIVT00036809001; MtrDRAFT_AC149129g30v2; OSJNBa0075N02.121; OSJNBb0038F03.1; OSJNBb0103I08.18; Os04g0543200; OsI_16837; OsI_17174; OsI_25123; OsJ_15642; OsJ_23325; PHYPADRAFT

Source	GOs	Term	Type	Identity
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	26S proteasome complex ubiquitin receptor, subunit Rpn13	IPR006773	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein chr2:18432902-18436629 FORWARD LENGTH=809	49%
RefSeq	Arabidopsis thaliana	NP_850422.1	RNA recognition motif-containing protein [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002326849.1	predicted protein, partial [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXS9

Fln msg: your sequence is longer than subject: 629 - 376

Fln protein: MEGEGEEEEVGEEHEGEEEEDEQHEVVKERRKRKEFEVFVGGLDKDAAEEDLRKVFSEVGEVVEIRLMMNPQTQKNKGFAFIRYASVDQAKRACTELKNPQVKGKVCGVSPSQDSDTLFLGNICKTWTKEALREKLKSFGIDNIEDLTLVEDPKDDGMNRGFAFLEFSARSDAMNAYKRLQKRDVVLGTDKTAKVSFAETFVEPDEEVMAQVKTVFVDGLPPSWDEDRIKEQFKKYGDIEKIQLARNMPSARRRDFGFVTFSTHDAAVACIDGVNNNGLGEGDSKVKVKARLSKPHQKGRLLKHGVRGGYKIGRGRGSTRGGRGPWVRAPAHFEPRRFGGRGGRFIRRGGQVAGRGVKRPLGRNAYPPVPERLPSRHLPPYERVRDRRPPAPAYPRGNARRDYGRRDEPYDDRQVRPSRSASDFATRAAAGRRSSYRDSYANRGPSSYSDSAPPRGVERTASRRPAYPEESYGRRMDKPYRDSRGRDYDNVSGSKRPYSAVEEPSRYGEPPMRNSRARLEYGVSASASQYGDYGDSTRLGRGSQLGYGGSARQDSYGLYDGHQSSVGYGGSKTYGSLGGSDAGGTYSSYGNDYLSGGTDIGSGSYSSLYSSRNMGGGYLSGSGSGSYY*

Protein Length: 630

Fln nts: ATGAAGGTATAGGTGAAGAGGAGGAAGGTGAGGGGGAGGAG_-_ATGGAAGGTGAAGGTGAAGAAGAGGAAGTGGGTGAGGAACATGAAGGTGAAGAAGAGGAGGATGAGCAACATGAAGTTGTGAAGGAAAGACGCAAGCGAAAGGAATTTGAAGTATTTGTTGGTGGCCTTGACAAGGACGCTGCTGAAGAAGATCTGAGAAAAGTATTTAGTGAAGTTGGCGAAGTGGTTGAAATCCGACTTATGATGAATCCACAAACACAGAAAAACAAGGGATTTGCCTTTATACGTTATGCAAGTGTTGATCAAGCTAAGCGAGCTTGCACAGAACTCAAGAATCCACAGGTTAAGGGTAAAGTTTGTGGGGTTTCACCTAGCCAGGACAGTGACACACTTTTCTTGGGAAATATATGTAAGACATGGACTAAGGAAGCTCTAAGAGAGAAGTTGAAGAGCTTTGGCATTGATAATATTGAGGATTTAACTCTAGTTGAAGACCCTAAAGATGATGGAATGAATCGTGGCTTTGCCTTTCTAGAGTTCTCAGCTCGTTCAGATGCCATGAATGCATATAAACGGCTGCAGAAGAGAGATGTTGTTTTGGGTACTGATAAAACTGCAAAGGTGTCGTTTGCAGAGACATTTGTCGAGCCTGATGAAGAAGTTATGGCACAGGTTAAGACTGTATTTGTTGATGGGTTACCACCTTCCTGGGATGAGGATCGAATCAAAGAGCAATTTAAGAAATACGGTGATATCGAGAAAATTCAGTTGGCACGCAACATGCCTTCAGCTAGGCGGAGGGACTTTGGATTTGTTACTTTTTCAACCCATGATGCTGCAGTAGCATGTATAGATGGAGTTAATAACAATGGGCTTGGAGAAGGTGATAGTAAGGTGAAGGTGAAGGCTAGATTGTCAAAGCCTCATCAAAAAGGAAGATTATTAAAACACGGTGTTCGAGGTGGTTATAAGATTGGGCGTGGTCGTGGCAGTACACGTGGTGGCAGGGGCCCATGGGTTCGTGCTCCTGCCCATTTTGAGCCCCGGAGGTTTGGAGGTCGTGGTGGCCGTTTCATTAGACGAGGAGGTCAAGTTGCAGGTCGTGGAGTAAAGCGTCCTCTGGGGCGCAATGCATATCCACCTGTACCAGAGAGACTCCCAAGTAGGCATTTGCCACCCTATGAAAGGGTACGAGATAGGCGCCCGCCAGCTCCGGCATATCCAAGAGGTAATGCAAGGAGGGATTATGGAAGACGAGACGAACCTTATGATGATCGTCAAGTGCGACCTAGTCGATCAGCTTCTGATTTTGCTACTCGTGCTGCTGCGGGAAGGCGGTCATCCTATAGAGATAGTTATGCAAATCGTGGGCCTAGCAGCTATTCAGACAGTGCACCTCCTCGAGGGGTGGAAAGGACTGCATCACGTAGACCTGCCTATCCAGAAGAAAGCTATGGTCGACGCATGGATAAGCCTTATCGTGATAGCCGTGGTCGTGATTATGACAATGTTTCTGGATCAAAACGTCCATATTCAGCAGTGGAAGAACCATCTAGATATGGAGAACCTCCTATGAGAAACTCGAGGGCTCGTTTGGAATATGGTGTCAGTGCTAGTGCATCGCAGTATGGTGACTATGGTGATTCCACTAGACTTGGGAGAGGCTCCCAGCTAGGCTATGGGGGTAGTGCTAGACAGGATTCATATGGCTTATATGATGGACACCAATCTAGTGTGGGTTATGGAGGAAGTAAAACGTACGGTTCTCTTGGGGGCAGTGATGCTGGTGGAACATATTCCAGCTATGGCAATGATTACTTGTCCGGTGGAACTGATATTGGTAGCGGTTCATATTCATCTCTATATTCAAGCCGTAATATGGGAGGTGGATACTTATCCGGCAGTGGTTCAGGATCTTATTATTAA___ATTATCTGTGTTCACGAGGATGTTGTAGTCTAGTTTCTACCAATCAATACCAAGTCTTCAGCTATTATTACTAAAGGAGGCCTCTTTGATTTGAGTGTTAATGGATGGATGTAAGTGGGCACCATACAACTAGACAAGCTGCAGCTTAAAAGTTTTTAAGAGATTAATGAAGGTGGCATTGTATGGTGGAAGATTTTTGGTTTCCTGATGTGAATGAAATATACAGGTGGGAGATGAAAGCAGACAATTGTTGTTTACATGTAGCTGAGATTTATATTTTGATAACACTGAATATATTTTAATTTGGGAAGTTGAGAGCACTGAATTTAATTGTCTTATTTAATGGTAACTCTGTATTGAGAAGACATGATTTGAAGGATTTTAGCTACACGAGAGATAAGGGAACATAACTGTTCAGATGACAGACAAGAAATTTTATATTGAGTTGAATGGTAAAATGGAGAGAAATTATATATTGAGTTGAATAGTCAAATGGATTGCAATATGCTAGAGTCTCTCTTAGTATTTTAGTGTATGACTGGTACTGGCTTCAACCAGGTTGATGGAAAAATATGCATTACGCAACTCATGCATCATCGATCTAGAACATCTAATAATTTGTGTTTTAAGTTGATGCACTTTTCTACTATGGAAATTCTTTAGAAGGCAATATGGACTGCATTTTAGCTAGGTGGAGTAACTTGGAAGTGGCCGTTGTGCACGTGTAG

Fln Alignment:

Contig319___DYGRRDEPYDDRQVRPSRSASDFATRAAAGRRSSYRDSYANRGPSSYSDSAPPRGVERTASRRPAYPEESYGRRMDKPYRDSRGRDYDNVSGSKRPYSAVEEPSRYGEPPMRNSRARLEYGVSASASQYGDYGDSTRLGRGSQLGYGG-SARQDSYGLYDGHQSSV--GYGGSKTYGSLGGSDAGGTYSSYGNDYLSGGTDI
A9NXS9_____________DYGRRDEPYDDRQVRSSRSAPDFSTRAAAARRSSYRDSYANRGSGSYSDNAPPRGVSRTVSRRPPYPEESYGRRIDKPYRDSRGRDYDSVSGSKRPYSAVEEPPRYGEPAMRNSRARLDYGVSASASQYGDYGESVRLGRGSQLGYGGSSARQDSYGLYDGHQSRVGSGYGGSKTYGSLGGSEAGGTYSSYGNDYLSSGADI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1080	87		12		0.992554
1645	85			14	0.993533
2325	88			11	0.923564
2327	87	12			0.992554
2328	87		12		0.992554
2329		12	87		0.992554
2409	6			81	0.999943
2410	6			81	0.999943
2546	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain