SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene239

Length: 3061 nt

UniGene Fasta

>sp_v3.0_unigene239
GACCACCGAGGTTGGTATCAGTAAATGAATGGGCGCTGTCGCTTGTTGTACCGAGCTAGCTGGATAGCCAGGTCAAATAATTGTGGCGTATCATATTGTCACGCTTCTTGTTTTTAAAACTAACTTTGAAGCCAAACAGCATGAGAACATTAATCCGGGTGCAGCCCAGACTTGAATCGAAGTCAACAGTAGCTGTCACCCAATTTCTCCACTCCTGATATTCTAGAAGCAGCAACCATTAATGGCCTCATGCTGTTTGCCTTCTTGCTTTCTCGGTGTTGAAACAGTCTCTATATTGGGGCTCTTCGTCTTTTCTTGTATTCCACCTTTCTAATCTTTTGGGGACCTACCTATATTATTTGTCTCTTCACATTCCTGCCCAACCATTCAATTTCAGATCTGGGAGGCCTTATCGATAAAGGGTGCTCCCATCAAAATCCAGGGTGCCCATCAACACACATATTTCTGCAGGGCCTAATCTGCAAATTTCTGTGTTTCAGCAATCCTTTTTAAGCTTTTGCATTAAGAAATCATTGTATAAGGTTCGATCTCTGCATTTCACTGCTTCCGCATTCAATTCTTGCATTAACTGCATTAAAATAGGTTCCGACAAGCCCTTCTAATTTCCTATCTTTGCATGGATTAATTTTGAATCCATGGGGGACCCTTTATATTCCAATTGTGAATGATAAGGATGCAATCAAGTTTCGATTATCCCACAACAAATATCGGATCTTTTGTACCGAATTCTTCGCTCTGTAAGTGTCCTGCATAGGGAGGATTAGATCTATCAGAGATGCCCAGCGTCGGTGTGCAATTGTACAGTGTTTTCTTCAAGCTTTTACTCAAGCACAGGCTCCAGAACCAAGCGCAAGTGGCCGATCATGATGCTGTGCAAGGGGTTACATCGAGGTCTGGATCAGGCAACGTGCCTGCAAATGCTGCATTCGTCGATGGGATTGCGACCAAGGACATACACATAGATGCCCTCACAAATCTGTCGATCAGGATTTTTCTTCCAGAGTCATCTTTGTTACCTGAACCGGTATCTAAACAGTCCCTGACTGGTCTGAAAGATGCAGGGGTGGGATCTGATAGGAGAACAGAGGAATTAGACACTAATAGAGGCTTTAGGAGGAGCAGCTATGGAGGGGCCATCGACACAAGTCATGGGGAGGGCAATAGGAGGAGCAGCTATGGAGGTATTGGCGAGAAAGAGAGGAGTTCCATGAACGAAAGGCTTAGGAATGGGATTGAAGCAACAGGTTATATAACACAGAAGGAGGGCTTTCAGCCGAATGGGGGTACTAGATTGGGGCATGACGGCACAGAATTTGAGACAGTGCGGTCTAGATCTGGGGCAGATGCGGGGAAAGAGAAGAGAGTAGAAGCCGGGAATTACAAAGGCTACCTGCCCAAAAATTTAGAGTCCGTTAACCGGAGATTGCCCATCATCTTTCAGTTCCACGGGACCGGGTTTGTCGCGGGTAGTAAGGATTCTTCTGCCAATGATTTTTTCTGCAGGAGGTTGGCCAAAGTGTGCGATGCAATAGTTATAGCTGTAGGATATCGCCTTGCGCCGGAGAACAAGTTCCCAGCAGCATTCGATGATGGATTCAAGGCTGTTCAGTGGTTGGCGAAACAGGCCAATCTTGCCGAGTGCAACAAGTCTTTTTCGCATGTACCCAAGGGTTATCTTCGAAATGATTTGGATGTTTACAGAGTAGATTCTCATCGGGAAATTCTCGACACATTTGGAGCTTCTTTGGTAGAGCCATGGCTCGCGGCCCACGGAGATCCTTCCAGGTGTGTACTTCTTGGAGTAAGCAGTGGTGCAAATATTGCAGATTATGTAGCTCGGAAGACGGTTCAAGCTGGCAAGTTTTTAGAGCCTGTTAAAGTGGTGGCACAAGTTCTCATGTACCCATTTTTTATTGGAACTGTCCCTACACACTCAGAGATCAAACTAGCTAACTCATATTTTTATGACAAAGCTACATGTCTTTTGGCATGGAAATTGTTTTTACCTGAGGAAGATTTCAATTTGGACCATGTTGCAGCCAACCCTCTCATTCCTGGCAGGGAACCACCTTTGAAACTAATGCCTCCAACATTAACAATAGTGGCAGAACTTGACTGGATGAAAGATCGTGCAATTGCATATTCAGAGGCGTTGAGAAAAGTGAATATTGATGCTCCAGTCCTGGAGTATAAGGATGCAGTTCATGAATTTGCATCACTCGATATGTTAGTAAAATCTAGACAGGCAGAAGTATGTGCAGAGGACATGGCTATTTGGATAAAGAAGTACATCTCTATCAAGGGCCATGAATTTTCTTATTGATAGGTGCTGTACATTTTGAAGACAAATATCCACATTGTGCATGTTCTTTGAAGCTCTTTTACATTGAGTTTTTCATCAATCACGAGATTCAAACTTCTTTTGTCGGCTAATGAGGATGAGTGATTGTGAGATAATTTATGCATTTGTACATTTGTAATAACCAATTTGACGAGGTTCCTCCACATTGTTTGCGGATATTGTCTATATTGCATTTGTGAATTTTTTTGTAAGCTATGATCACATGGATGATGGTGGCTACCACGGTTCATGCTGCTTTACCATCATTATTCGTTAAGAATAATGTGCCAATGTCGAAGGAAACTTGTTCTATTGTTTCTAGTAGACTCTGTTCTTGTTTGATCTTTATGCGGGATATTTCCTGCTCAAGGTCATACATCATCTTGAGCTCATGGTCTAATGGTTAATCACCATGGAAACATATCTGGGGTGTTAAGATCCTCGTGCTTATTCACAATGTGACGGCCAATCTAGGTTGGCTAGCTGTTATTTCTTGTGCATCAACCTATAATGTTTGCTCTTTCCTTGGAATGACTTTGAATAGATTTCCTATTGCCAAAGCGTTCCAAGCCTGAGTTCGTAAATGAATTGTTTTAAGTAGAACTATGCCTTCTACTTCAGGTGTTTTATAATTTGTAATCTCTTTAGTTGATGGAAATTGCAATAAAAGGAACATGCCACAAGGGGGCTACATCTTGT

Ace file of the UniGene sp_v3.0_unigene239

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable carboxylesterase 11 n=2 Tax=Arabidopsis RepID=CXE11_ARATH	-	-	0.0	56%
FL-Next	tr=PrMC3; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	31%
Sma3	CXE carboxylesterase	-	-	1.5e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3	Carboxylesterase.	EC:3.1.1.1	-	4.166e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	4.166e-06	%
Sma3	Drug metabolism - other enzymes	00983	4.166e-06	%
Sma3	Metabolic pathways	01100	4.166e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	4.166e-06	%

Source	Gene names
Sma3	At3g27320; At5g14310; B1065G12.16; CXE10; CXE7; F18O22_100; GLP5; GSVIVT00012667001; GSVIVT00020578001; GSVIVT00027057001; GSVIVT00027407001; GSVIVT00032555001; GSVIVT00035116001; LOC_Os12g15400; Os01g0902300; Os12g0256000; OsI_04819; OsI_37955; OsJ_04445

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	carboxylesterase activity	GO:0004091	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H2A	IPR002119	-	-
Sma3	Lipase, GDXG, active site	IPR002168	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3	Alpha/beta hydrolase fold-3	IPR013094	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G27320.1	alpha/beta-Hydrolases superfamily protein chr3:10090307-10092391 FORWARD LENGTH=460	56%
RefSeq	Arabidopsis thaliana	NP_189367.1	hydrolase [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002311735.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9ZSE0

Fln msg: your sequence is longer than subject: 516 - 319

Fln protein: MPSVGVQLYSVFFKLLLKHRLQNQAQVADHDAVQGVTSRSGSGNVPANAAFVDGIATKDIHIDALTNLSIRIFLPESSLLPEPVSKQSLTGLKDAGVGSDRRTEELDTNRGFRRSSYGGAIDTSHGEGNRRSSYGGIGEKERSSMNERLRNGIEATGYITQKEGFQPNGGTRLGHDGTEFETVRSRSGADAGKEKRVEAGNYKGYLPKNLESVNRRLPIIFQFHGTGFVAGSKDSSANDFFCRRLAKVCDAIVIAVGYRLAPENKFPAAFDDGFKAVQWLAKQANLAECNKSFSHVPKGYLRNDLDVYRVDSHREILDTFGASLVEPWLAAHGDPSRCVLLGVSSGANIADYVARKTVQAGKFLEPVKVVAQVLMYPFFIGTVPTHSEIKLANSYFYDKATCLLAWKLFLPEEDFNLDHVAANPLIPGREPPLKLMPPTLTIVAELDWMKDRAIAYSEALRKVNIDAPVLEYKDAVHEFASLDMLVKSRQAEVCAEDMAIWIKKYISIKGHEFSY*

Protein Length: 517

Fln nts: GACCACCGAGGTTGGTATCAGTAAATGAATGGGCGCTGTCGCTTGTTGTACCGAGCTAGCTGGATAGCCAGGTCAAATAATTGTGGCGTATCATATTGTCACGCTTCTTGTTTTTAAAACTAACTTTGAAGCCAAACAGCATGAGAACATTAATCCGGGTGCAGCCCAGACTTGAATCGAAGTCAACAGTAGCTGTCACCCAATTTCTCCACTCCTGATATTCTAGAAGCAGCAACCATTAATGGCCTCATGCTGTTTGCCTTCTTGCTTTCTCGGTGTTGAAACAGTCTCTATATTGGGGCTCTTCGTCTTTTCTTGTATTCCACCTTTCTAATCTTTTGGGGACCTACCTATATTATTTGTCTCTTCACATTCCTGCCCAACCATTCAATTTCAGATCTGGGAGGCCTTATCGATAAAGGGTGCTCCCATCAAAATCCAGGGTGCCCATCAACACACATATTTCTGCAGGGCCTAATCTGCAAATTTCTGTGTTTCAGCAATCCTTTTTAAGCTTTTGCATTAAGAAATCATTGTATAAGGTTCGATCTCTGCATTTCACTGCTTCCGCATTCAATTCTTGCATTAACTGCATTAAAATAGGTTCCGACAAGCCCTTCTAATTTCCTATCTTTGCATGGATTAATTTTGAATCCATGGGGGACCCTTTATATTCCAATTGTGAATGATAAGGATGCAATCAAGTTTCGATTATCCCACAACAAATATCGGATCTTTTGTACCGAATTCTTCGCTCTGTAAGTGTCCTGCATAGGGAGGATTAGATCTATCAGAG_-_ATGCCCAGCGTCGGTGTGCAATTGTACAGTGTTTTCTTCAAGCTTTTACTCAAGCACAGGCTCCAGAACCAAGCGCAAGTGGCCGATCATGATGCTGTGCAAGGGGTTACATCGAGGTCTGGATCAGGCAACGTGCCTGCAAATGCTGCATTCGTCGATGGGATTGCGACCAAGGACATACACATAGATGCCCTCACAAATCTGTCGATCAGGATTTTTCTTCCAGAGTCATCTTTGTTACCTGAACCGGTATCTAAACAGTCCCTGACTGGTCTGAAAGATGCAGGGGTGGGATCTGATAGGAGAACAGAGGAATTAGACACTAATAGAGGCTTTAGGAGGAGCAGCTATGGAGGGGCCATCGACACAAGTCATGGGGAGGGCAATAGGAGGAGCAGCTATGGAGGTATTGGCGAGAAAGAGAGGAGTTCCATGAACGAAAGGCTTAGGAATGGGATTGAAGCAACAGGTTATATAACACAGAAGGAGGGCTTTCAGCCGAATGGGGGTACTAGATTGGGGCATGACGGCACAGAATTTGAGACAGTGCGGTCTAGATCTGGGGCAGATGCGGGGAAAGAGAAGAGAGTAGAAGCCGGGAATTACAAAGGCTACCTGCCCAAAAATTTAGAGTCCGTTAACCGGAGATTGCCCATCATCTTTCAGTTCCACGGGACCGGGTTTGTCGCGGGTAGTAAGGATTCTTCTGCCAATGATTTTTTCTGCAGGAGGTTGGCCAAAGTGTGCGATGCAATAGTTATAGCTGTAGGATATCGCCTTGCGCCGGAGAACAAGTTCCCAGCAGCATTCGATGATGGATTCAAGGCTGTTCAGTGGTTGGCGAAACAGGCCAATCTTGCCGAGTGCAACAAGTCTTTTTCGCATGTACCCAAGGGTTATCTTCGAAATGATTTGGATGTTTACAGAGTAGATTCTCATCGGGAAATTCTCGACACATTTGGAGCTTCTTTGGTAGAGCCATGGCTCGCGGCCCACGGAGATCCTTCCAGGTGTGTACTTCTTGGAGTAAGCAGTGGTGCAAATATTGCAGATTATGTAGCTCGGAAGACGGTTCAAGCTGGCAAGTTTTTAGAGCCTGTTAAAGTGGTGGCACAAGTTCTCATGTACCCATTTTTTATTGGAACTGTCCCTACACACTCAGAGATCAAACTAGCTAACTCATATTTTTATGACAAAGCTACATGTCTTTTGGCATGGAAATTGTTTTTACCTGAGGAAGATTTCAATTTGGACCATGTTGCAGCCAACCCTCTCATTCCTGGCAGGGAACCACCTTTGAAACTAATGCCTCCAACATTAACAATAGTGGCAGAACTTGACTGGATGAAAGATCGTGCAATTGCATATTCAGAGGCGTTGAGAAAAGTGAATATTGATGCTCCAGTCCTGGAGTATAAGGATGCAGTTCATGAATTTGCATCACTCGATATGTTAGTAAAATCTAGACAGGCAGAAGTATGTGCAGAGGACATGGCTATTTGGATAAAGAAGTACATCTCTATCAAGGGCCATGAATTTTCTTATTGA___TAGGTGCTGTACATTTTGAAGACAAATATCCACATTGTGCATGTTCTTTGAAGCTCTTTTACATTGAGTTTTTCATCAATCACGAGATTCAAACTTCTTTTGTCGGCTAATGAGGATGAGTGATTGTGAGATAATTTATGCATTTGTACATTTGTAATAACCAATTTGACGAGGTTCCTCCACATTGTTTGCGGATATTGTCTATATTGCATTTGTGAATTTTTTTGTAAGCTATGATCACATGGATGATGGTGGCTACCACGGTTCATGCTGCTTTACCATCATTATTCGTTAAGAATAATGTGCCAATGTCGAAGGAAACTTGTTCTATTGTTTCTAGTAGACTCTGTTCTTGTTTGATCTTTATGCGGGATATTTCCTGCTCAAGGTCATACATCATCTTGAGCTCATGGTCTAATGGTTAATCACCATGGAAACATATCTGGGGTGTTAAGATCCTCGTGCTTATTCACAATGTGACGGCCAATCTAGGTTGGCTAGCTGTTATTTCTTGTGCATCAACCTATAATGTTTGCTCTTTCCTTGGAATGACTTTGAATAGATTTCCTATTGCCAAAGCGTTCCAAGCCTGAGTTCGTAAATGAATTGTTTTAAGTAGAACTATGCCTTCTACTTCAGGTGTTTTATAATTTGTAATCTCTTTAGTTGATGGAAATTGCAATAAAAGGAACATGCCACAAGGGGGCTACATCTTGT

Fln Alignment:

Contig239___ADAGKEKRVEAGNYKG-----YLPKNLESVNRRLPIIFQFHGTGFVAGSKDSSANDFFCRRLAKVCDAIVIAVGYRLAPENKFPAAFDDGFKAVQWLAKQANLAECNKSFSHVPKGYLRNDLDVYRVDSHREILDTFGASLVEPWLAAHGDPSRCVLLGVSSGANIADYVARKTVQAGKFLEPVKVVAQVLMYPFFIGTVPTHSEIKLANSYFYDKATCL----LAWKLFLPEEDFNLDHVAANPLIPGREPPLKL-MPPTLTIVAELDWMKDRAIAYSEALRKVNIDAPVLEYKDAVHEF
Q9ZSE0_____________SDGARSKDVVIDPVKGISARLFLPAELP-LAQKLPLLFYFHGGGFCIGTTAWEGYHLFLSLLAATTRALVISVDYRLAPEHRLPAAYDDCFDAVEWVAS--------------------------------------GGGKAEPWLDAHADYGRCFLAGESAGGNIAHVVGSRT--ADQDLGPLKIRGLIVIHPYF----GSEERIECEKVAAGDDAAALELNDLFWRLALPPGS-DRDYPTCNPRGPRSADLRKVPLPPVLVTVAGLDLLKTRGLLYYELLQSCGKEAELMEAEGEIHAY

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1279		12		87	0.992554
1282	87			12	0.992554
1433		14		85	0.993533
1682		10		90	0.90298
1903		18		81	0.999994
2012	16	83			0.994512
2014			16	83	0.994512
2015			16	83	0.994512
2016			16	83	0.994512
2077		10		90	0.90298
2523		81		18	0.999994
2724	12		87		0.992554
2818		70		30	1.0
2859	11			88	0.923564
2861	11			88	0.923564
2862	11			88	0.923564
2867			87	12	0.992554
2890	16			83	0.994512
2949	25			75	0.996473
2951	25		75		0.996473
2953	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain