SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene221

Length: 1247 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene221

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger CCCH domain-containing protein 57 [Arabidopsis thaliana] gb\|AAM61197.1\| zinc finger protein 3 [Arabidopsis thaliana] gb\|AED92307.1\| zinc finger CCCH domain-containing protein 57 [Arabidopsis thaliana]	-	-	6.0e-36	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%

Source	Gene names
Sma3	At1g48195; F21D18; PHYPADRAFT_29541; PHYPADRAFT_29547;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMQ0

Fln msg: your sequence is shorter than subject: 275 - 554

Fln protein: LAEINKQFFPPRTAPFSSETMPLPIMQTQASAPQKQTFPERPGQFECPHFLRTGECRFGVMCQYNHPKEWFAKSSESMFNPTGPPVHYVPVAPMSSSEEKQHTAGIGLLNGTKQTTDLAIGSLPSVLTSAEPICSAAKAIPTPQPWELAAKKETFPERPGQPDCAHYLKTGDCSFGAACRYNHPKEIIEQCMLSEMGLPLRPGKPTCVFYSRCGICKFGPRCKFDHPITGHTSNRSVPLNSELPVDPYSSCTSATDMQASSASSLSSQRCQRLT*

Protein Length: 276

Fln nts: ATTTAGCTGAGATTAATAAGCAGTTTTTTCCCCCCAGAACTGCTCCTTTCTCCTCTGAAACAATGCCACTCCCTATAATGCAAACTCAGGCAAGTGCCCCCCAGAAGCAGACATTTCCAGAAAGACCTGGCCAGTTCGAATGTCCACATTTTTTGAGAACGGGAGAATGCAGATTTGGTGTTATGTGTCAATATAACCACCCTAAGGAATGGTTTGCAAAGTCATCTGAATCCATGTTTAATCCAACCGGTCCTCCAGTGCATTATGTCCCTGTAGCTCCAATGTCATCATCAGAAGAGAAGCAACACACTGCTGGAATAGGCCTTTTAAATGGTACAAAACAAACTACTGATTTAGCTATAGGTTCTTTGCCTTCTGTTCTTACGTCTGCAGAGCCTATATGTTCTGCAGCCAAAGCAATTCCTACCCCACAGCCTTGGGAGCTTGCCGCAAAGAAAGAGACCTTTCCTGAAAGGCCTGGCCAGCCAGATTGTGCGCATTACTTGAAAACAGGGGATTGTAGTTTTGGTGCAGCTTGCAGATATAACCATCCCAAGGAAATTATTGAGCAATGCATGCTTAGTGAAATGGGGCTTCCCTTGCGTCCTGGTAAGCCAACATGCGTGTTTTACAGTCGGTGTGGCATCTGCAAATTTGGACCACGGTGCAAATTTGATCATCCAATAACAGGTCATACAAGCAATCGATCGGTTCCCTTAAATTCTGAACTTCCTGTGGATCCATATTCCAGTTGTACTTCTGCCACAGATATGCAGGCATCATCTGCTTCTTCATTGTCGTCGCAAAGATGTCAAAGATTAACTTAG___GTATCAGAAGAACCTGGCGGCTTCAATCAAGTTACTGGTTGTTTACAATATGCTCCAGGACTACTCTTTGTAAATTTTTGATACCATGGTTGTATTCTGGATGTCAGATGAATAAGTCCTGACTGAATTCAGACAGCATGTCTGGAACAAGTTACTCGACGCCAATGTTGACTAGAGTTGATAATTAGGGTGCTTGATTGCACCTTTCGACATTAGAGATGCTCAATGAACTAGATAATTAGAGCTGCTGTTTTTTTCGCTTTGAAGTCATTTTTATGATAGGCTTAAAGATCTAATTGCTGTATAATGTCTAATATAAACTTGATTGCGCAAGTGGTGCTGGATATTTTTTTGTAGCTAAGTCTTACTTATGTCATGTTTCACCGAGCATAATAATAAGTGGCTAATTCCAGATTTTAG

Fln Alignment:

Contig221___QASAPQKQTFPERPGQFECPHFLRTGECRFGVMCQYNHPKEWFAKSSESMFNPTGPPV
B8LMQ0_____________QPNRTQTETYPERPGQPECQYYIKTGDCKFGFACRYHHPHERVSQSSTCVLSPIGLPL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
599	10	90			0.90298
601			10	90	0.90298
603		90	10		0.90298
740		11		88	0.923564
791			70	30	1.0
818	87		12		0.992554
842		10		90	0.90298
1051		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain