SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183

Length: 2241 nt

UniGene Fasta

>sp_v3.0_unigene183
ATCCTCAGAAATGAAGATCGCCTCCCATGCCGCCAGCTTGGATGGCGCGGGAATCCGGCAAATCTTTTATTCACTGAAAAGCTGGAATTTGGGAACAGAGTAGCCTCAGTACCAGGAAATGTCAAGTCTCCACCTCGAAAAAACAAAGGAAGTTCATTTTCTCGTAGAAGGAAAAGTTTTGACTTGGGGAACATGTCTAATTCTGACATGATAACATTCATTCCACAAATTTTAGATTACACTGCTAATGAGACTACTTCTGAAGGAATTTTCCTTCCCATTGAAGATCGAAGTAAACATGCTAGTGATTTTCATATTGTGGCAATCGATTCAGGGGTTCCAAGACGTCCTCCTGCTGGCAAAAGGTTGTCTGATATTTCACAGTATCCGAGACTAGTCGAGCTTTTGCTAAATAGTCCACAATTTGCTTCAGATTTGTTACATGAGATATCACGGCAAAACCTTGGCTGTCACATTTCAGAAACAGCGGTCGGATCTATGGATCAGTTTTTCTCTGGAGATATTGACCAAGACAAAGTCGTGCATGAGTTTCAAGCTAGCTTCCGTGGTGGATTAAGAGAAATGCAGAGGTTGCAACCATTCATATTCAAGCTTCACCATAAATTGGATGTTTTGTTAAAGACATTTCTGTCATTAATAAGCAAATATCTTCCAGGGGATGACGAGAAAGAGGATTCTGGGGCCTCTGAATCATGCCACTTGTACTCACCATTTCACAATCTTTCTTGTCAGTCACCTGTTGCAGGTAAAGAATGCTTGAAAAATGGGCAAAACACAGAGCCTCAAGATCTTGCATATACCAGTGGCACAGATTCACAGGACCTCCTTGGTAATCCATTCTCAAAATCACCTTATAGGGATAACTTAGAAATGTCACCATTTTTTCAAGAGAACTATCATGGAAAATATTCAAAAGGAAATAGTGATTCATCTCACAGTATGCGCCTGACAGTTAAATTGAAGGATTTGAACAAGATTGCAAAGTTTGATAGTGAGCTGAGCAAGGAACTGGAACATTGGAATGAAATGCTTGGAATGGAAGTGATTAAACTTTGCCATGAAATGAATTTCAACACCGGTTTTTTGAAGGAGGTGATTCACAAAATGTCATAGACAGTTATGAATTAAAGGTGAGGTTGGAACACCTTCTGGAAAGGATGGCTTTGGTCTCTCAAGCTGCCGACTCAGAGCGGCCATCACATGTTACAGATTCTTTGTTTATTGGTGGAGCTTTGGCTGCAAGGTCTATAAATACACTGCAGCTTTTGGGTGTCACTCATGTTCTATGCCTCTGTGCTAATGAGCTTGGCCAATCAGAAGCACAATATCCAGACCTTTTTGAGTATAAAAATTTTGAGGTATCTGATCTTGATGATGCAAATATTAGCTATATTTTTGAAGATGCATCTGATTTCATAGAGAAGGTCGAAAGAAATGGGGGAAAGGTTCTTGTGCACTGCTTTGAAGGCAAAAGCCGTAGCACAACAGTTGTTCTTGCATATTTGATGCTACGCAAGCATGAGACACTTCTTGAAGCATGGACCAGACTTAAAGGAGTTCACTGTCGTGCACAGCCAAATGATGGTTTCATGAGAATTCTTATGGATCTGGATAAGAAATTGTATGGAAAACCTTCTATGGATTGGCAACGAAGGAAGCCTATCATGAGGAGTTGCCCAATTTGTGGCAAGATTGTAGGTGTTAGTAGCAGTTCCCTGAAACTTCATTTGCAAAAGTCACATCGGCGGCTGTCGTCGGGAAGTGTGGATAGCGTAGAAGTAAAAGAATTACAACGGATTCTTGATTCTGTTATAATTGGCTGCTAAGAAGAAGTTTTCCAAGTAATTAGTCTTAAAGAAGTTTTGGCTTTATGTTATCTTTGACCAGGAAATGCTTTTAGTGTACATGGACATGCCTTGGAGATCAACAAGAAATTGTTGTTGTCAGAATGTAGCCACATGTTACTGTTTATGACCTAAAATCATAGCCAATGTACCTCATATGTCCCTCATTTTAATGGTCTGAGATTGTCGACTGTTTGACATGCCCAAAATTTTAATCTGCCAGTAACTAAGCATGTAATAGAAGAAAAGACAATTGAACTGTCTGAAGCTATAAGTATTAACCATGCAAACTATGATGGCATCACCATTAGCGAAATTTCCGAGACAAAACATAGATTTGTATACACTGTATGGTACTGGTTGGCTATGAATTACG

Ace file of the UniGene sp_v3.0_unigene183

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0311500 protein (Fragment) n=3 Tax=Oryza sativa RepID=Q0JNA2_ORYSJ	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%

Source	Gene names
Sma3	At5g23720; B1011A07.6; B1146B04.37; GSVIVT00018027001; MICPUN_108351; Os01g0311500; Os01g0347000; OsI_01590; OsI_01805; OsJ_01481; OsJ_01667; P0440D10.5; P0551A11.33; PHS1; PHYPADRAFT_213529; POPTRDRAFT_575447; POPTRDRAFT_773256; RCOM_1504160;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	protein tyrosine phosphatase activity	GO:0004725	Molecular Function	-
Sma3	protein tyrosine/serine/threonine phosphatase activity	GO:0008138	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dual specificity phosphatase, catalytic domain	IPR000340	-	-
Sma3	Protein-tyrosine/Dual-specificity phosphatase	IPR000387	-	-
Sma3	Actin-fragmin kinase, catalytic domain	IPR015275	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G23720.1	PHS1 dual specificity protein phosphatase family protein chr5:7998309-8002594 FORWARD LENGTH=929	65%
RefSeq	Arabidopsis thaliana	NP_197761.2	dual specificity protein phosphatase family protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002321746.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7T6

Fln msg: your sequence is longer than subject: 223 - 169

Fln protein: MALVSQAADSERPSHVTDSLFIGGALAARSINTLQLLGVTHVLCLCANELGQSEAQYPDLFEYKNFEVSDLDDANISYIFEDASDFIEKVERNGGKVLVHCFEGKSRSTTVVLAYLMLRKHETLLEAWTRLKGVHCRAQPNDGFMRILMDLDKKLYGKPSMDWQRRKPIMRSCPICGKIVGVSSSSLKLHLQKSHRRLSSGSVDSVEVKELQRILDSVIIGC*

Protein Length: 224

Fln nts: ATCCTCAGAAATGAAGATCGCCTCCCATGCCGCCAGCTTGGATGGCGCGGGAATCCGGCAAATCTTTTATTCACTGAAAAGCTGGAATTTGGGAACAGAGTAGCCTCAGTACCAGGAAATGTCAAGTCTCCACCTCGAAAAAACAAAGGAAGTTCATTTTCTCGTAGAAGGAAAAGTTTTGACTTGGGGAACATGTCTAATTCTGACATGATAACATTCATTCCACAAATTTTAGATTACACTGCTAATGAGACTACTTCTGAAGGAATTTTCCTTCCCATTGAAGATCGAAGTAAACATGCTAGTGATTTTCATATTGTGGCAATCGATTCAGGGGTTCCAAGACGTCCTCCTGCTGGCAAAAGGTTGTCTGATATTTCACAGTATCCGAGACTAGTCGAGCTTTTGCTAAATAGTCCACAATTTGCTTCAGATTTGTTACATGAGATATCACGGCAAAACCTTGGCTGTCACATTTCAGAAACAGCGGTCGGATCTATGGATCAGTTTTTCTCTGGAGATATTGACCAAGACAAAGTCGTGCATGAGTTTCAAGCTAGCTTCCGTGGTGGATTAAGAGAAATGCAGAGGTTGCAACCATTCATATTCAAGCTTCACCATAAATTGGATGTTTTGTTAAAGACATTTCTGTCATTAATAAGCAAATATCTTCCAGGGGATGACGAGAAAGAGGATTCTGGGGCCTCTGAATCATGCCACTTGTACTCACCATTTCACAATCTTTCTTGTCAGTCACCTGTTGCAGGTAAAGAATGCTTGAAAAATGGGCAAAACACAGAGCCTCAAGATCTTGCATATACCAGTGGCACAGATTCACAGGACCTCCTTGGTAATCCATTCTCAAAATCACCTTATAGGGATAACTTAGAAATGTCACCATTTTTTCAAGAGAACTATCATGGAAAATATTCAAAAGGAAATAGTGATTCATCTCACAGTATGCGCCTGACAGTTAAATTGAAGGATTTGAACAAGATTGCAAAGTTTGATAGTGAGCTGAGCAAGGAACTGGAACATTGGAATGAAATGCTTGGAATGGAAGTGATTAAACTTTGCCATGAAATGAATTTCAACACCGGTTTTTTGAAGGAGGTGATTCACAAAATGTCATAGACAGTTATGAATTAAAGGTGAGGTTGGAACACCTTCTGGAAAGG_-_ATGGCTTTGGTCTCTCAAGCTGCCGACTCAGAGCGGCCATCACATGTTACAGATTCTTTGTTTATTGGTGGAGCTTTGGCTGCAAGGTCTATAAATACACTGCAGCTTTTGGGTGTCACTCATGTTCTATGCCTCTGTGCTAATGAGCTTGGCCAATCAGAAGCACAATATCCAGACCTTTTTGAGTATAAAAATTTTGAGGTATCTGATCTTGATGATGCAAATATTAGCTATATTTTTGAAGATGCATCTGATTTCATAGAGAAGGTCGAAAGAAATGGGGGAAAGGTTCTTGTGCACTGCTTTGAAGGCAAAAGCCGTAGCACAACAGTTGTTCTTGCATATTTGATGCTACGCAAGCATGAGACACTTCTTGAAGCATGGACCAGACTTAAAGGAGTTCACTGTCGTGCACAGCCAAATGATGGTTTCATGAGAATTCTTATGGATCTGGATAAGAAATTGTATGGAAAACCTTCTATGGATTGGCAACGAAGGAAGCCTATCATGAGGAGTTGCCCAATTTGTGGCAAGATTGTAGGTGTTAGTAGCAGTTCCCTGAAACTTCATTTGCAAAAGTCACATCGGCGGCTGTCGTCGGGAAGTGTGGATAGCGTAGAAGTAAAAGAATTACAACGGATTCTTGATTCTGTTATAATTGGCTGCTAA___GAAGAAGTTTTCCAAGTAATTAGTCTTAAAGAAGTTTTGGCTTTATGTTATCTTTGACCAGGAAATGCTTTTAGTGTACATGGACATGCCTTGGAGATCAACAAGAAATTGTTGTTGTCAGAATGTAGCCACATGTTACTGTTTATGACCTAAAATCATAGCCAATGTACCTCATATGTCCCTCATTTTAATGGTCTGAGATTGTCGACTGTTTGACATGCCCAAAATTTTAATCTGCCAGTAACTAAGCATGTAATAGAAGAAAAGACAATTGAACTGTCTGAAGCTATAAGTATTAACCATGCAAACTATGATGGCATCACCATTAGCGAAATTTCCGAGACAAAACATAGATTTGTATACACTGTATGGTACTGGTTGGCTATGAATTACG

Fln Alignment:

Contig183___LFIGGALAARSINTLQLLGVTHVLCLCANELGQSEAQYPDLFEYKNFEVSDLDDANISYIFEDASDFIEKVERNGGKVLVHCFEGKSRSTTVVLAYLMLRKHETLLEAWTRLKGVHCRAQPNDGFMRILMDLDKKL
D5A7T6_____________LFLGSVGAASNKGVLKSLNITHVL-LVANALVPA---YPRDFKYMQVEVLDSVNTNLVQHFEECFSFIDEAKREGGGVLVHCFAGRSRSVTVIVAYLMKTHQMSLSEALELVRSKRPQAAPNQGFLQQLQSFENRL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
704		66		33	0.997452
717		66		33	0.997452
804	33	66			0.997452
837	33	66			0.997452
838	66			33	0.997452
839		66	33		0.997452
840	66		33		0.997452
946	80			20	0.995493
988		20	80		0.995493
1658	85			14	0.993533
1660	14	85			0.993533
1747	83	16			0.994512
1802	85	14			0.993533
1805	85			14	0.993533
1807	14			85	0.993533
1808	71	14			0.984337
1809	85	14			0.993533
1810	85			14	0.993533
1811	85			14	0.993533
1813	71		14		0.984337
1814	85	14			0.993533
1816			14	85	0.993533
1817	85			14	0.993533
1820	85	14			0.993533
1821		85		14	0.993533
1822		14	85		0.993533
1823	14		85		0.993533
1914			83	16	0.994512
2018	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain