SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159

Length: 2229 nt

UniGene Fasta

>sp_v3.0_unigene159
GAGGAAAAAAATTGACCATGATCTCATTTCCAGGGTGGTACAGTGCTGTTGGAAGTGGTCTCAGGTGCTTTGAATTATTTTTCCTTTTTGTTTTAGTTTTTCGGCGGCTTTAAAACGGCAAAAAGAATAAAGCCCTCAGGGACTGAAGGTTCCCTAGGGTTATAAGGATCTCTATCATATCTTAATGACAAATGCACAGAGCGCGTGATCGCGTTCCGTCGTGATTTATTACATTAAATGGGTAGACCCCAACAGAATTCGTGTTTTGGGCCGATTGGGGTTTGGTGCTTCAAATTACATGTTAGGGTTTCATTCCATTGCTGAATTTCTAAACAGAGTGTTTTAGATGGTTGTATTGAGTATTTTCTGAGGGATCATGGATATACTTGGCACGGAATGATGATTGGTTGAAGTGGGCTGTATAAATTTCCAATCTCGTTAATTTAATTTCAGCAGAAAAAAAATGAATTCTGGGACATTAGAAGGAAGCATTCCTCCTGCTTCGAGGAGGGATCCGTACGAAGTACTTGGAGTTTCAAGGGATGCATCTGATCAAGAGATAAAGACTGCTTACAGGAAGCTTGCTCTCAAATATCATCCTGACAAAAATGCAAGTAATCCTGAAGCTTCAGAATTGTTTAAAGAGGTTGCATACTCTTACAGCATTCTTTCGGATCCAGAGAAAAGAAGGCAGTATGATACAGCGGGGTTTGAGGCTTTGGAATTCGAAAGCATGGACATGGAGGTTGACCTGTCAAATTTGGGTACTGTGAATACCATGTTTGCGGCATTATTTAGCAAGCTTGGTGTGCCCATCAAGACAACAATTTCTGCTACTGTTCTAGAGGATGCCCTGAATGGAACAGTGACTGTTAGGCCACTACCCCTTGGAAGGCCTACCAGTGATAAGGTAGAAAAACAAGGAGCACACTTTTTTGGTATAACTATTACAGAGCAGCAAGCTGAAGCTGGAATAGTCGTTAGAGTCACCTCACCTGCACAAAGCAAATTCAAGCTGCTTTATTTTGAGCAGGAGGCAAATGGTGGTTATGGGCTAGCACTACAGGAAGACAGTGAAAAGGCCGGTAAAGTTACAGCTGCTGGAATGTACTTCTTACATTATCAGGTTTATCGACTGGATCCAACAGTCAATGCGTTGGCAATGGCCAAGGATCCTGATGCTGCATTTTTCAAGAAGTTAGAAGGTCTCCAACCGTGTGAAATTTCTGAGCTCAAAGCTGGCACTCACATATTTGCAGTTTATGGTGACAATTTTTTCAAGAGTGCTAGCTATACCATCGAGGCTATCTGTGCTCAGTCTTTTGAAGAATCAACAGAGAAGCTCAAGGATGTAGAGGCTCAAATATTGGCTAAACGAAATGAACTTCGAATATTTGAGACAGAGTACAGAAAAGCTTTGGCCCGCTTTCAGGAAGTCACGAACAGATACGCACAAGAAAAACAGGCAGTGGATGAGCTGCTGAAACTACGAGATAATATTCAATCATCATTCACTGCAAGTACTGTAGCAAAGACTACTAGCAGCAGTAACACAAGCAAGCCCACAGGTGAAGATTCCAAGATTGAAAGTCCAAAAGAAGATAGCCTATCGGATGGGAAGGATAAATCAAATAGAAAGAAGTGGTTTAATCTCAATTTCAAAGGAGAGAAGAAGACATGATGAGCATAAGTTGAAATGGATGGACTTAATTAATATTTATTGAGGACAATGGAATGGAGAGGCATATCTTGGAGGCTATGTTTGTTACAATGCAATCGGGAATGGTGTAGATGCATTAAGATCAAATTTACATAGATCCAAGCTTTGAAGGTTTATACCCATTGGCTTCCCATTTAGTTAGTGTCACAAGTGTGATAAAGCCATAGGCTGAACTGTCTTAAGTTGTATTTGTTCCTATTATGTATGCTTGCTGGCATTCCTTTGATGATTCGAATTTCATACTCTATTTTGTTCGATCGGATTCCTCTGTAGGATCTTTGGCAGCTCAACAAAAGAGCCTTGTATCTTTGGTCGTAGGTTAACTTCGAAACTATCACACAAAGTTCCATCCGATGCAGACAAAGTCGAATTTCACTGTTTGTGGCATGGCTTAGGGCTTTGTCGTTAACATATATGCCAGTTCAGGCATATATCATCTATTGTTTTGTATTTTGTAACAATCACATTCTATTTAATAAAGCTCTGCTTACATGGATTCCTACATAGTT

Ace file of the UniGene sp_v3.0_unigene159

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	chaperone protein dnaJ 15 [Arabidopsis thaliana] sp\|Q9ZSY2.1\|DNJ15_ARATH RecName: Full=Chaperone protein dnaJ 15; Short=AtDjB15; Short=AtJ15; AltName: Full=Protein ALTERED RESPONSE TO GRAVITY; Short=AtARG1 gb\|AAF26045.1\|AC015986_8 ARG1 protein (Altered Re	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Sma3	Predicted protein	-	-	-

Source	Gene names
Sma3	POPTRDRAFT_723718;

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G68370.1	ARG1 Chaperone DnaJ-domain superfamily protein chr1:25632046-25634527 REVERSE LENGTH=410	74%
RefSeq	Arabidopsis thaliana	NP_177004.1	chaperone protein dnaJ 15 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002314850.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN93

Fln msg: your sequence is longer than subject: 406 - 182

Fln protein: MNSGTLEGSIPPASRRDPYEVLGVSRDASDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDTAGFEALEFESMDMEVDLSNLGTVNTMFAALFSKLGVPIKTTISATVLEDALNGTVTVRPLPLGRPTSDKVEKQGAHFFGITITEQQAEAGIVVRVTSPAQSKFKLLYFEQEANGGYGLALQEDSEKAGKVTAAGMYFLHYQVYRLDPTVNALAMAKDPDAAFFKKLEGLQPCEISELKAGTHIFAVYGDNFFKSASYTIEAICAQSFEESTEKLKDVEAQILAKRNELRIFETEYRKALARFQEVTNRYAQEKQAVDELLKLRDNIQSSFTASTVAKTTSSSNTSKPTGEDSKIESPKEDSLSDGKDKSNRKKWFNLNFKGEKKT*

Protein Length: 407

Fln nts: GAGGAAAAAAATTGACCATGATCTCATTTCCAGGGTGGTACAGTGCTGTTGGAAGTGGTCTCAGGTGCTTTGAATTATTTTTCCTTTTTGTTTTAGTTTTTCGGCGGCTTTAAAACGGCAAAAAGAATAAAGCCCTCAGGGACTGAAGGTTCCCTAGGGTTATAAGGATCTCTATCATATCTTAATGACAAATGCACAGAGCGCGTGATCGCGTTCCGTCGTGATTTATTACATTAAATGGGTAGACCCCAACAGAATTCGTGTTTTGGGCCGATTGGGGTTTGGTGCTTCAAATTACATGTTAGGGTTTCATTCCATTGCTGAATTTCTAAACAGAGTGTTTTAGATGGTTGTATTGAGTATTTTCTGAGGGATCATGGATATACTTGGCACGGAATGATGATTGGTTGAAGTGGGCTGTATAAATTTCCAATCTCGTTAATTTAATTTCAGCAGAAAAAAA_-_ATGAATTCTGGGACATTAGAAGGAAGCATTCCTCCTGCTTCGAGGAGGGATCCGTACGAAGTACTTGGAGTTTCAAGGGATGCATCTGATCAAGAGATAAAGACTGCTTACAGGAAGCTTGCTCTCAAATATCATCCTGACAAAAATGCAAGTAATCCTGAAGCTTCAGAATTGTTTAAAGAGGTTGCATACTCTTACAGCATTCTTTCGGATCCAGAGAAAAGAAGGCAGTATGATACAGCGGGGTTTGAGGCTTTGGAATTCGAAAGCATGGACATGGAGGTTGACCTGTCAAATTTGGGTACTGTGAATACCATGTTTGCGGCATTATTTAGCAAGCTTGGTGTGCCCATCAAGACAACAATTTCTGCTACTGTTCTAGAGGATGCCCTGAATGGAACAGTGACTGTTAGGCCACTACCCCTTGGAAGGCCTACCAGTGATAAGGTAGAAAAACAAGGAGCACACTTTTTTGGTATAACTATTACAGAGCAGCAAGCTGAAGCTGGAATAGTCGTTAGAGTCACCTCACCTGCACAAAGCAAATTCAAGCTGCTTTATTTTGAGCAGGAGGCAAATGGTGGTTATGGGCTAGCACTACAGGAAGACAGTGAAAAGGCCGGTAAAGTTACAGCTGCTGGAATGTACTTCTTACATTATCAGGTTTATCGACTGGATCCAACAGTCAATGCGTTGGCAATGGCCAAGGATCCTGATGCTGCATTTTTCAAGAAGTTAGAAGGTCTCCAACCGTGTGAAATTTCTGAGCTCAAAGCTGGCACTCACATATTTGCAGTTTATGGTGACAATTTTTTCAAGAGTGCTAGCTATACCATCGAGGCTATCTGTGCTCAGTCTTTTGAAGAATCAACAGAGAAGCTCAAGGATGTAGAGGCTCAAATATTGGCTAAACGAAATGAACTTCGAATATTTGAGACAGAGTACAGAAAAGCTTTGGCCCGCTTTCAGGAAGTCACGAACAGATACGCACAAGAAAAACAGGCAGTGGATGAGCTGCTGAAACTACGAGATAATATTCAATCATCATTCACTGCAAGTACTGTAGCAAAGACTACTAGCAGCAGTAACACAAGCAAGCCCACAGGTGAAGATTCCAAGATTGAAAGTCCAAAAGAAGATAGCCTATCGGATGGGAAGGATAAATCAAATAGAAAGAAGTGGTTTAATCTCAATTTCAAAGGAGAGAAGAAGACATGA___TGAGCATAAGTTGAAATGGATGGACTTAATTAATATTTATTGAGGACAATGGAATGGAGAGGCATATCTTGGAGGCTATGTTTGTTACAATGCAATCGGGAATGGTGTAGATGCATTAAGATCAAATTTACATAGATCCAAGCTTTGAAGGTTTATACCCATTGGCTTCCCATTTAGTTAGTGTCACAAGTGTGATAAAGCCATAGGCTGAACTGTCTTAAGTTGTATTTGTTCCTATTATGTATGCTTGCTGGCATTCCTTTGATGATTCGAATTTCATACTCTATTTTGTTCGATCGGATTCCTCTGTAGGATCTTTGGCAGCTCAACAAAAGAGCCTTGTATCTTTGGTCGTAGGTTAACTTCGAAACTATCACACAAAGTTCCATCCGATGCAGACAAAGTCGAATTTCACTGTTTGTGGCATGGCTTAGGGCTTTGTCGTTAACATATATGCCAGTTCAGGCATATATCATCTATTGTTTTGTATTTTGTAACAATCACATTCTATTTAATAAAGCTCTGCTTACATGGATTCCTACATAGTT

Fln Alignment:

Contig159___DPYEVLGVSRDASDQEIKTAYRKLALKYHPDKNASN-PEASELFKEVAYSYSILSDPEKRRQYDTAGFEALE
B8LN93_____________DYYIILNVGRRASEDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKRAIYDQYGEEGLK

SNPs (tot: 74)

Position	A %	C %	G %	T %	Probability
96	33		66		0.997452
140			85	14	0.993533
146	85		14		0.993533
147	85	14			0.993533
148			85	14	0.993533
151	14			85	0.993533
153		85		14	0.993533
155	14			85	0.993533
305	15	84			0.999986
307			15	84	0.999986
309			15	84	0.999986
312			84	15	0.999986
313			84	15	0.999986
314	15		84		0.999986
318	21	78			1.0
319	78		21		1.0
323	21	78			1.0
324	21	78			1.0
326		21		78	1.0
329	21	78			1.0
333	78			21	1.0
334	78		21		1.0
339		21		78	1.0
340	73			26	1.0
341	73			26	1.0
342	73			26	1.0
343		40	33	26	1.0
344	73		26		1.0
346	73	26			1.0
347	26		73		1.0
349			73	26	1.0
350		26		73	1.0
351	26			73	1.0
352	26			73	1.0
358			73	26	1.0
360	26			73	1.0
362		26	73		1.0
363	6	25		68	1.0
365	6	37		56	1.0
368	68	25		6	1.0
370	6		25	68	1.0
371	68		25	6	1.0
385			20	80	1.0
386		85		14	0.999981
387	78	7		14	0.999974
389			78	21	1.0
390			85	14	0.999981
432	90	10			0.90298
433			10	90	0.90298
434	90	10			0.90298
436	90		10		0.90298
438			10	90	0.90298
439	10			90	0.90298
440		90	10		0.90298
441		90		10	0.90298
442	90		10		0.90298
447		90	10		0.90298
449		10		90	0.90298
450		10		90	0.90298
452	90	10			0.90298
454			10	90	0.90298
455	10			90	0.90298
456	90		10		0.90298
458		12		87	0.992554
460			12	87	0.992554
955	87	12			0.992554
957		75	12	12	0.975346
1291		62		25	1.0
1660			10	90	0.90298
1661	90		10		0.90298
2037	90		9		1.0
2213	38		61		1.0
2223		34		65	1.0
2227	10		90		0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain