SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155

Length: 1704 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene155

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9SKV4_PHYPA	-	-	0.0	60%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	60%

Source	Gene names
Sma3	GSVIVT00038228001; MICPUCDRAFT_11102; MurB; PHYPADRAFT_233561; VITISV_017399;

Source	GOs	Term	Type	Identity
Sma3	UDP-N-acetylmuramate dehydrogenase activity	GO:0008762	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	peptidoglycan biosynthetic process	GO:0009252	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	UDP-N-acetylenolpyruvoylglucosamine reductase	IPR003170	-	-
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal	IPR011601	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-binding, type 2, subdomain 1	IPR016167	-	-
Sma3	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2	IPR016169	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SKV4

Fln msg:

Fln protein: MLPITAMHCFSCSYPESIPHLGCGQIPPILSASKRPTISISRQSLLKWVSPTYTHTQPLTITGSSRVRISWIPCLPSRKGGMAVALEATNGLQRQGEPEESLEEEELHFVEGKLLSELSTWGIGGPAKYFVELHTEPQLLAALRCCHKHNLRFLILERGSNCLFDDRGFDGCVMLNRINFIEKINPATYRVGSGYAFNLLGLQCSKDGFTGLEFASGIPGTVGGAVFMNAGADGQETADILKSVEVIMVDGSRRVFQRPELTFSYRKSPFQGMQHFAVIVAATFELKPLPSSREHQKDYLQRRYKTQPISDRSAGCVFRNPTTTTHSAGAIIEQAGLKGVMLGGAKVSEVHANFLINAEKSTSTDMRSLIKFVKDQVREKVGVELHEEILYVPYN*

Protein Length: 397

Fln nts: TGATGGAAAACAGAGTAACAATCCTCATCACACATAATGGTTAGCAAGCTCATCAGATAGACCAAATTCAACTCAATTTTATCGTTTGTTTACAAAAAAGAGAAGAAATATTATTTTTCCTGTGTTTCAAGTTAAGATTTCTTACCATTCCAAACCATGAGATACCTTAGATCAGACGAATTACTGGCATTCGAAATTCGATCTTATTAAAAAAATAAAAACACTGGTGTGCTCAAATGATCGATAATTATCTACCCTGAGGTTGCAAGGCACGCCGA_-_ATGCTTCCTATCACTGCCATGCATTGTTTTTCCTGTAGCTACCCTGAGAGCATTCCACATTTGGGGTGTGGGCAAATTCCCCCCATTCTCTCTGCATCCAAAAGACCCACCATCTCCATTTCTAGGCAATCGTTACTGAAATGGGTTAGTCCCACTTACACCCACACACAGCCATTGACCATCACTGGTTCGTCTCGTGTTCGAATCTCATGGATCCCTTGTCTTCCTTCGAGAAAGGGCGGGATGGCAGTTGCTTTGGAGGCTACCAATGGTCTCCAGAGACAGGGAGAGCCAGAAGAATCTCTTGAGGAGGAGGAACTGCATTTCGTTGAAGGCAAACTGCTTAGTGAATTGAGCACGTGGGGCATTGGAGGGCCTGCTAAATACTTTGTAGAGCTGCACACCGAACCCCAACTGCTCGCTGCACTCAGATGTTGTCACAAACACAATTTACGCTTTTTAATCCTTGAGAGAGGTTCCAATTGTCTTTTCGATGATCGTGGCTTTGATGGTTGTGTTATGCTTAACCGGATTAATTTTATTGAAAAAATTAATCCAGCTACATACCGAGTTGGGAGTGGCTATGCATTCAACCTGTTGGGTTTGCAATGTTCAAAGGATGGTTTTACAGGGCTCGAGTTTGCCTCTGGTATACCTGGGACTGTTGGAGGAGCTGTATTTATGAATGCAGGAGCAGATGGGCAGGAAACTGCAGATATTCTCAAATCTGTGGAGGTCATTATGGTTGATGGAAGCCGAAGGGTATTTCAGAGACCTGAACTCACATTCAGCTACCGCAAATCACCCTTTCAGGGTATGCAGCACTTTGCAGTTATTGTAGCTGCAACGTTTGAGTTAAAGCCTCTTCCATCATCAAGAGAACACCAGAAAGATTACTTGCAGAGAAGATATAAAACTCAACCAATCAGCGATCGCAGTGCTGGGTGTGTCTTTCGCAACCCTACAACTACTACTCACTCTGCTGGAGCTATCATCGAGCAAGCAGGACTGAAAGGTGTGATGCTGGGTGGTGCAAAAGTTTCAGAAGTGCATGCAAACTTTTTAATCAATGCGGAGAAATCGACTTCTACAGATATGCGTTCATTGATAAAGTTTGTCAAGGATCAAGTGAGAGAGAAAGTTGGTGTTGAGCTTCACGAGGAAATATTATATGTACCATACAATTAG___AAAAAGATTAGATTAATTTTCTGGGAGCATACCCATCTCGTACTTACCCTTAAATGTTTGCTGTTTCTGCAACAAGGTTAGTATGCTGTTTTTGTCCTCACCTATTTCTGTAATAAGGTTTGTATGCTTATTTTGTTTTCAACTGGAAAAGACGTGATATGCAAGAATCCATAGCTATGGACAAATGTATATTGTCTACATGAGGGTAAGTTTACATAATACAAAGCATTGTTCTGTC

Fln Alignment:

Contig155___LLSELSTWGIGGPAKYFVELHTEPQLLAALRCCHKHNLRFLILERGSNCLFDDRGFDGCVMLNRINFIEKINPATYRVGSGYAFNLLGLQCSKDGFTGLEFASGIPGTVGGAVFMNAGADGQETADILKSVEVIMVDGSRRVFQRP--ELTFSYRKSPFQGMQHFAVIVAATFELKPLPSSREHQKDYLQRRYKTQPISDRSAGCVFRNPTTTTHSAGAIIEQAGLKGVMLGGAKVSEVHANFLINAEKSTSTDMRSLIKFVKDQVREKVGVELHEEILYVPYN
A9SKV4_____________MLSEVSTWGIGGPARIYAEVSTPDELATVLRYCTCHNVRWFVVGKGSNCLFDDRGFDGCVILNRINFLEKLGTGRYRVGSGYAFNTLGVQCSRDGFSGLEFAGGIPGTVGGAIYMNAGADGQETGDVVQNVEILTTSGVSHSLSRDAGELKFDYRFSPFQKMSDFSVIVAATFDLQPNSDAKQRQRIYLERRKRTQPVTEKSAGCVFRNPGAGCQSAGALIEQAGLKGVAIGGARVSEKHANFLINGGGSKSQDVQALIALVKEEVHKKFGLWLQDEVLYIPYN

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
374	75		25		0.996473
429		66		33	1.0
905			20	80	0.995493
953		20		80	0.995493
987	80		20		0.995493
1110	16		83		0.994512
1136	83		16		0.994512
1185	75			25	0.996473
1307	11			88	0.923564
1308		11	88		0.923564
1309	11		88		0.923564
1311			88	11	0.923564
1348	71			28	1.0
1351		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain