SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene92

Length: 1398 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene92

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase [Pisum sativum]	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	SAMT	-	-	5.028e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Jasmonate O-methyltransferase.	EC:2.1.1.141	-	1.5e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592		1.5e-06	%

Source	Gene names
Sma3	AbSAMT1; BSMT1; BSMT2; BSMT3; CcCS2; CgCS2; CjCS1; ClCS1; ERAF16; GSVIVT00004652001; GSVIVT00004653001; GSVIVT00014571001; GSVIVT00014573001; GSVIVT00014574001; GSVIVT00024874001; GSVIVT00024875001; GSVIVT00024877001; GSVIVT00024879001; GSVIVT00024881001;

Source	GOs	Term	Type	e value	Identity
Sma3	methyltransferase activity	GO:0008168	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNJ2

Fln msg: Overlapping hits, possible frame ERROR between 517 and 447,

Fln protein: MGIDLKMEKDFHMNSGLGESSYAQNSTLLQKNVLQIVQPMLEEAILPMKLTVECKTFCIADLGCSSGPNALFAVENITKTLKAKCLSAGITVPQCQVFFNDLPASDFNSLFRILPPFSVNTDHQNEEGAVDRSxxxxxxxxxxxxxxxxxxxxxxxxxSSYSLHWLSQVPPDILEKNSVAWNKGKIFCEGSPAVGEAYFRQYQRDFNAFLRARAEELVRGGRIFLVLMGRTSSDPSDQGFSAFTWETLGSSLNDLVSQGLIEQEKVDSFNIPLYAPCPEEVSSEVTREGSFEIRRLELIRKSERFSEEEIEAMTGSSASLKDAYGRKLAKQLRAVTESLIKLHFGEEIADALFERFGETMGERLSERMEYGKKGGYLVIVLERK*

Protein Length: 386

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCAACGAAA_-_ATGGGGATCGACCTGAAGATGGAGAAAGATTTTCATATGAACTCTGGGCTTGGAGAATCCAGCTATGCTCAAAATTCCACTCTCCTCCAGAAGAACGTATTACAAATTGTACAGCCTATGTTGGAAGAAGCCATTTTACCAATGAAGTTAACGGTGGAATGCAAGACATTTTGCATTGCAGACCTTGGTTGTTCTTCTGGACCCAATGCTCTCTTCGCGGTTGAAAATATAACAAAGACCCTCAAAGCCAAATGCCTATCTGCGGGCATAACTGTTCCGCAGTGCCAAGTATTCTTTAACGATCTTCCTGCTTCTGATTTCAACTCACTCTTTAGAATTTTGCCTCCTTTTTCTGTGAATACTGATCACCAGAATGAAGAGGGTGCGGTAGATAGATCGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCATCGTACAGTCTTCACTGGTTGTCTCAAGTTCCTCCTGATATTTTGGAGAAAAATTCAGTGGCATGGAACAAGGGAAAAATCTTCTGCGAAGGGTCTCCAGCTGTTGGAGAAGCTTATTTTCGTCAATATCAGAGGGATTTTAACGCGTTTCTGAGAGCCCGGGCAGAGGAGTTGGTTCGTGGAGGCCGCATATTTTTGGTGTTAATGGGTCGAACATCTAGCGATCCAAGCGATCAGGGTTTCAGTGCTTTCACCTGGGAGACATTAGGAAGCAGTTTGAATGATTTGGTGTCTCAGGGGCTGATCGAGCAGGAGAAAGTAGACTCGTTCAACATCCCCTTATATGCTCCATGTCCAGAGGAAGTGAGCAGCGAAGTAACAAGAGAGGGTTCATTTGAAATACGACGATTGGAGCTGATAAGAAAATCAGAGAGATTTAGCGAGGAGGAGATTGAAGCGATGACAGGGAGCTCAGCCTCTCTAAAGGATGCGTATGGAAGAAAACTTGCCAAGCAATTGAGAGCAGTGACTGAAAGCCTGATAAAACTCCACTTCGGAGAAGAAATAGCGGATGCGTTGTTCGAGAGATTCGGAGAAACAATGGGAGAGAGACTGAGCGAGCGCATGGAATATGGAAAGAAGGGAGGATATCTGGTCATAGTTCTCGAACGCAAATGA___AAGCTCTAAACAGTTGGTGTTACAAATAAAGTCAGACTGCATTAATGTCTAATGGCCATCCGCTAGGTAGTTAGAGGTCATCAGTCTTTATTGGCAGATTTAGAGGAGTATTTCATGGAATGGATGCAACTTCATAAATAGAGCAAATTTTGACTCTTTCGCTTTTTGGTACGGTAAATATTGGCAACCAAACCAATAG

Fln Alignment:

Contig92___MGIDLKMEKDFHMNSGLGESSYAQNSTLLQKNVLQIVQPMLEEAILPMKLTVECKTFCIADLGCSSGPNALFAVENITKTLKAKCLSAGITVPQCQVFFNDLPASDFNSLFRILPPFSVNTDHQNEEGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSSYSLHWLSQVPPDILEKNSVAWNKGKIFCEG-SPAVGEAYFRQYQRDFNAFLRARAEELVRGGRIFLVLMGRTSSDPSDQGFSAFTWETLGSSLNDLVSQGLIEQEKVDSFNIPLYAPCPEEVSSEVTREGSFEIRRLELIRKSERFSEEEIEAMTGSSASLKDAYGRKLAKQLRAVTESLIKLHFGEEIADALFERFGETMGERLSERMEYGKKGGYLVIVLERK
B8LNJ2____________MGIDMEMERVFRMNAGLGDSSYAQNSILLQRRGLEIVEPVLEEAILSMKMMSEFNTFCIADLGCSSGPNALFTAENITKTLKAKYMSAGIPVPQC----------------------------QNEEGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSSFGLHWLSQVPAEILEKNSVTWNKGKIFCGGESQAVGEAYFRQFQKDFNTFLRARADEMVGGGRMLLLLLGRTPHDPIDQGYIALQWELLEISLNDLVKQGLIEEEKVDSFNIPMYCPCPGEVSNEIAREGSFEIQRLELLRRSENFPREEMEAITG-SASAKDAYGQKLAKQLRAVMESLMKHHFGEEIMDALFERYGEILGRRLSERIEYGKRGGYLVLVLQRR

SNPs (tot: 3)

Position	A %	C %	G %	Probability
619	33	66		0.997452
685	25		75	0.996473
706	75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain