SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78

Length: 2871 nt

UniGene Fasta

>sp_v3.0_unigene78
ACATATGGGGGAATAAAATCGAAGGCTACTGCATAGTGCATTTAGGTAAGGCTAGATCTGTGATTTTATTGGGTGTCTGGAAATTGTTGTATCTTAGGTCGGTTGGAAAGGATATGTGATTTTGGGTTTCACAAAGGAACATAATGGGGCAATTGGGTTTGTATGGAACTATGAAATCTGAGTTGGGTTTCGGAGATAATATTCAGCCATGGTTGATTTCTGCAATTCAGTTTGAATTCGGGAAGAAGACTTTGGGCATGGCTGGAATGGTACAAAACTTCATGCTCAGAAATTTTTCTGTTCTCTAATAATCATTTTCTGCTATCGTCTTTTCTGGGATTCTCTCTTAATATAATTGCAAGGATGTGGTGAGATTCTTTATCTGTTCCTGCATTGCAGAAAAGAGTTTAGTCAATGTGGCTTGCACCATCAAAATCAGATATATTGCGAGGGTAAAAAAATTGTAAGAGCTAGTGCGGGCATGAACATGGGTGCCTAATAATCAAGGAGTTAAGATTGACCTCAGAGCTTTACCATCTCAAATTACAGAGCATTCTTTGTAGATAGGAAACCCCTGTTGTTTTATAATTCAAAGTTTTACAATGCAGAAGAGGAAATCAGTCCGTTCTGATGCGGAAATCAACATCCTTAGTGATGAGATCCTCATAACTATTCTTGATAAGTTACAGGATCCTATAGATAGAAAGTCCTGGTGCCTGGTTTGCAAGCATTTTTTCTATCTGGAGGCCAACTACAGGAAGAAAGTACAGCTGATGCAAGCAGAGTTACTTCCAAGGATTCTGAGAAGATACAGTAAGATTCAGCATTTGGATTTATCCCTGTGTTCTCAGATCACAGATAAGAGTCTGGGGCATGTAGCAGGCATCCTCGGAAATCATTTGGTTTCCATCAATCTTTCTAGGTTGTGGACTTTCACTCATCTGGGTCTTCTTGAGTTGGTTAAAAATTGTCAATCTTTAGTCGAACTTGATCTTTCCAATTGCACTGAAATCACAGATCATGCAGCAGAAGCCATAGCACATGCCCGAAATTTGGAATCATTGAATCTAGTGAAATGCAAACAGCTTACTGACATGGGTCTTGTATGCATAGCTGTAGGATGTAGTAAATTACGGAATTTGAATCTTAGGTGGTGTGTGGGGGTCACAGACCTTGGAGTTGAGCTGGTTGCTATGAAATGCAAGGAGTTACGTAGTCTTGATCTCTCTTACACGCAGATAACAAACAAATGTCTTGCTTCAATTAACCATCTAAATCATCTTGAGAATTTAGCATTGGTTGGATGTGTTCGTGTGGGTGATAATGGCCTTACGTATCTCAAAAAATCTTTGCAGAGACTTGATGTTTCGAAGTGTCAGAATGTTAGCTGCACGGGAATAATTTCACTTGCAAGTGGTTCCTCAGACTTGCGTCAACTTACTCTTGCCTATAGTATACCAGTTTCTGACGCTCTTCTTAAGAGCTTCCAAAACTTGGATAGACTACAAACGATCAAATTTGATGGTTGCGTAATTTCCCCCAGAGCGTTGGAGTCAGTTGGGAAAAGCTATTGCATGTCTTTGAGGGAATTAAGCTTAAGCAAGTGTATTGGAGTTACAGATGAAGGATTGACTGCACTTGTGGCATGCTGTAGAGAGCTGAACAAGTTAGATCTCACTTGTTGCCGTAATATAACTGATGTTGCTCTCTCGGCCATTGCAACATCATGCAGATATCTTTCATCTCTTAAGATGGAATCCTGCAGCTTGGTCACAGAAACAAGTTTGGCTATGTTAGGAGACGGCTGTCCTTTCCTGGAGGAGCTTGACTTCACCGACTGTAGCATAAACAATACAGGATTGAAATCCCTTTCTAAGTGTTCGGAATTGATAACTTTGAAACTAGGATTCTGCCCAAATATATCCAACGAAGGAATTGCCCATATAGGGGCCCGGTGCTCATCTCTCCAAGAACTTGATTTGTACAGATCTGTAGGAGTCGGGGATGCTGGATTAGCAGCAGTTGCCAATGGTTGCCCAAGGTTAAAGAGTATTAATATTTCTTATTGCATACATGTCACTGATAATGGTCTGGCATCTCTCGCTCAATTGCAAAAACTTCACCAGCTTGAAATCCGAGGTTGTTCTGGGATTTCATCTGCTGGTCTCTCTGCAATCGCTTTAGGATGTAAGCGTATCGTTGAATTGGATATCAAAAGGTGCTATGGTGTTGATGACGTTGGAATATTGGCTGTAGCCAGGTCATGTCAAAATCTGCGACAGGTGAATGTCTCATATTGCTCAATCTCAGATGTTGGATTGTTAGCATTGGCGAGTCTTAGATGCTTACAGAACATAAAGCTAGTTTATTTGAGGAATGTAACGATCAATGGTTTCATGTCCGCTCTGCTGGCTTGCAAGAGTTCGAAGAAACTCAAGCTTATTCAATCCTTAAAGTACAACTTACCACGAGTTGTGATTGAGATGTTGGAAGCCCGTGGGTGCAATATTCGATGGATGGACAAGCCTTTTGTGATATAAGATGCTCATCTCAAATAAGTGTCGGTACTTGATATGTTTTCGGAATTGTAATATATATCCAAGAGTTCCTTTTACGGGTAGTGTTTGTCAATCTAAACAAAGCAAATTTAGGTAATGATGAATTTCAGTTTCAAACTCATGAATCTGTGGGTTTAATGTAGTGAGTAAATTATCTCACAAGTCCATCTTCTGAGAGATGAAATAAGCACCTATGATATCATAGGTACACATTGTATCTTGAAGAGCCTTGTGTTTATTCTGAATGGTCTCTTCTTTATTTATATATTGAGGCTTTGTTTCAGTTTGTGCAGTAAGTTATTTTTATTCATGG

Ace file of the UniGene sp_v3.0_unigene78

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box/LRR-repeat protein 3 [Arabidopsis thaliana] sp\|Q8RWU5.1\|FBL3_ARATH RecName: Full=F-box/LRR-repeat protein 3 gb\|AAM14053.1\| putative F-box protein family, AtFBL3 [Arabidopsis thaliana] gb\|AAM67471.1\| putative F-box family protein AtFBL3 [Arabidopsis	-	-	0.0	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Sma3	Leucine Rich Repeat family protein, expressed	-	-	6.67e-06	-

Source	Gene names
Sma3	At5g01720; At5g27920; At5g27920/F14I23_80; F7A7.240; FBL3; GSVIVT00022689001; GSVIVT00023993001; GSVIVT00037420001; LOC_Os11g01780; LOC_Os12g01760; LOC_Os12g36670; Os12g0108500; Os12g0552700; OsI_34818; OsI_37183; OsJ_32666; OsJ_34957; OsJ_36445; PHYPADRA

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease A	IPR001427	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G01720.1	RNI-like superfamily protein chr5:267118-270391 REVERSE LENGTH=665	47%
RefSeq	Arabidopsis thaliana	NP_568094.2	F-box/LRR-repeat protein 3 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002323638.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A998

Fln msg: your sequence is longer than subject: 646 - 335

Fln protein: MQKRKSVRSDAEINILSDEILITILDKLQDPIDRKSWCLVCKHFFYLEANYRKKVQLMQAELLPRILRRYSKIQHLDLSLCSQITDKSLGHVAGILGNHLVSINLSRLWTFTHLGLLELVKNCQSLVELDLSNCTEITDHAAEAIAHARNLESLNLVKCKQLTDMGLVCIAVGCSKLRNLNLRWCVGVTDLGVELVAMKCKELRSLDLSYTQITNKCLASINHLNHLENLALVGCVRVGDNGLTYLKKSLQRLDVSKCQNVSCTGIISLASGSSDLRQLTLAYSIPVSDALLKSFQNLDRLQTIKFDGCVISPRALESVGKSYCMSLRELSLSKCIGVTDEGLTALVACCRELNKLDLTCCRNITDVALSAIATSCRYLSSLKMESCSLVTETSLAMLGDGCPFLEELDFTDCSINNTGLKSLSKCSELITLKLGFCPNISNEGIAHIGARCSSLQELDLYRSVGVGDAGLAAVANGCPRLKSINISYCIHVTDNGLASLAQLQKLHQLEIRGCSGISSAGLSAIALGCKRIVELDIKRCYGVDDVGILAVARSCQNLRQVNVSYCSISDVGLLALASLRCLQNIKLVYLRNVTINGFMSALLACKSSKKLKLIQSLKYNLPRVVIEMLEARGCNIRWMDKPFVI*

Protein Length: 647

Fln nts: ACATATGGGGGAATAAAATCGAAGGCTACTGCATAGTGCATTTAGGTAAGGCTAGATCTGTGATTTTATTGGGTGTCTGGAAATTGTTGTATCTTAGGTCGGTTGGAAAGGATATGTGATTTTGGGTTTCACAAAGGAACATAATGGGGCAATTGGGTTTGTATGGAACTATGAAATCTGAGTTGGGTTTCGGAGATAATATTCAGCCATGGTTGATTTCTGCAATTCAGTTTGAATTCGGGAAGAAGACTTTGGGCATGGCTGGAATGGTACAAAACTTCATGCTCAGAAATTTTTCTGTTCTCTAATAATCATTTTCTGCTATCGTCTTTTCTGGGATTCTCTCTTAATATAATTGCAAGGATGTGGTGAGATTCTTTATCTGTTCCTGCATTGCAGAAAAGAGTTTAGTCAATGTGGCTTGCACCATCAAAATCAGATATATTGCGAGGGTAAAAAAATTGTAAGAGCTAGTGCGGGCATGAACATGGGTGCCTAATAATCAAGGAGTTAAGATTGACCTCAGAGCTTTACCATCTCAAATTACAGAGCATTCTTTGTAGATAGGAAACCCCTGTTGTTTTATAATTCAAAGTTTTACA_-_ATGCAGAAGAGGAAATCAGTCCGTTCTGATGCGGAAATCAACATCCTTAGTGATGAGATCCTCATAACTATTCTTGATAAGTTACAGGATCCTATAGATAGAAAGTCCTGGTGCCTGGTTTGCAAGCATTTTTTCTATCTGGAGGCCAACTACAGGAAGAAAGTACAGCTGATGCAAGCAGAGTTACTTCCAAGGATTCTGAGAAGATACAGTAAGATTCAGCATTTGGATTTATCCCTGTGTTCTCAGATCACAGATAAGAGTCTGGGGCATGTAGCAGGCATCCTCGGAAATCATTTGGTTTCCATCAATCTTTCTAGGTTGTGGACTTTCACTCATCTGGGTCTTCTTGAGTTGGTTAAAAATTGTCAATCTTTAGTCGAACTTGATCTTTCCAATTGCACTGAAATCACAGATCATGCAGCAGAAGCCATAGCACATGCCCGAAATTTGGAATCATTGAATCTAGTGAAATGCAAACAGCTTACTGACATGGGTCTTGTATGCATAGCTGTAGGATGTAGTAAATTACGGAATTTGAATCTTAGGTGGTGTGTGGGGGTCACAGACCTTGGAGTTGAGCTGGTTGCTATGAAATGCAAGGAGTTACGTAGTCTTGATCTCTCTTACACGCAGATAACAAACAAATGTCTTGCTTCAATTAACCATCTAAATCATCTTGAGAATTTAGCATTGGTTGGATGTGTTCGTGTGGGTGATAATGGCCTTACGTATCTCAAAAAATCTTTGCAGAGACTTGATGTTTCGAAGTGTCAGAATGTTAGCTGCACGGGAATAATTTCACTTGCAAGTGGTTCCTCAGACTTGCGTCAACTTACTCTTGCCTATAGTATACCAGTTTCTGACGCTCTTCTTAAGAGCTTCCAAAACTTGGATAGACTACAAACGATCAAATTTGATGGTTGCGTAATTTCCCCCAGAGCGTTGGAGTCAGTTGGGAAAAGCTATTGCATGTCTTTGAGGGAATTAAGCTTAAGCAAGTGTATTGGAGTTACAGATGAAGGATTGACTGCACTTGTGGCATGCTGTAGAGAGCTGAACAAGTTAGATCTCACTTGTTGCCGTAATATAACTGATGTTGCTCTCTCGGCCATTGCAACATCATGCAGATATCTTTCATCTCTTAAGATGGAATCCTGCAGCTTGGTCACAGAAACAAGTTTGGCTATGTTAGGAGACGGCTGTCCTTTCCTGGAGGAGCTTGACTTCACCGACTGTAGCATAAACAATACAGGATTGAAATCCCTTTCTAAGTGTTCGGAATTGATAACTTTGAAACTAGGATTCTGCCCAAATATATCCAACGAAGGAATTGCCCATATAGGGGCCCGGTGCTCATCTCTCCAAGAACTTGATTTGTACAGATCTGTAGGAGTCGGGGATGCTGGATTAGCAGCAGTTGCCAATGGTTGCCCAAGGTTAAAGAGTATTAATATTTCTTATTGCATACATGTCACTGATAATGGTCTGGCATCTCTCGCTCAATTGCAAAAACTTCACCAGCTTGAAATCCGAGGTTGTTCTGGGATTTCATCTGCTGGTCTCTCTGCAATCGCTTTAGGATGTAAGCGTATCGTTGAATTGGATATCAAAAGGTGCTATGGTGTTGATGACGTTGGAATATTGGCTGTAGCCAGGTCATGTCAAAATCTGCGACAGGTGAATGTCTCATATTGCTCAATCTCAGATGTTGGATTGTTAGCATTGGCGAGTCTTAGATGCTTACAGAACATAAAGCTAGTTTATTTGAGGAATGTAACGATCAATGGTTTCATGTCCGCTCTGCTGGCTTGCAAGAGTTCGAAGAAACTCAAGCTTATTCAATCCTTAAAGTACAACTTACCACGAGTTGTGATTGAGATGTTGGAAGCCCGTGGGTGCAATATTCGATGGATGGACAAGCCTTTTGTGATATAA___GATGCTCATCTCAAATAAGTGTCGGTACTTGATATGTTTTCGGAATTGTAATATATATCCAAGAGTTCCTTTTACGGGTAGTGTTTGTCAATCTAAACAAAGCAAATTTAGGTAATGATGAATTTCAGTTTCAAACTCATGAATCTGTGGGTTTAATGTAGTGAGTAAATTATCTCACAAGTCCATCTTCTGAGAGATGAAATAAGCACCTATGATATCATAGGTACACATTGTATCTTGAAGAGCCTTGTGTTTATTCTGAATGGTCTCTTCTTTATTTATATATTGAGGCTTTGTTTCAGTTTGTGCAGTAAGTTATTTTTATTCATGG

Fln Alignment:

Contig78___LRRYSKIQHLDLSLCSQITDKSLGHVAGILGNHLVSINLSRLWTFTHLGLLELVKNCQSLVELDLSNCTEITDHAAEAIAHARNLESLNLVKCKQLTDMGLVCIAVGCSKLRNLNLRWCVGVTDLGVELVAMKCKELRSLDLSYTQITNKCLASINHLNHLENLALVGCVRVGDNG
D5A998____________ISRCSELITLNLGFCLNISAEGIYHIGACCSN-LQELNLYRSVGTGDAGLEAIANGCPRLKSINISYCINVTDNSMKSISRLQKLHNLEIRGCPGISSAGLSAIALGCKRIVALDVKGCYNIDDAGILAIADSCQNLRQINVSYCPISDVGLSTLARLSCLQNMKLVHLKNVTVNG

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
651	83		16		0.994512
681	85	14			0.993533
685		14		85	0.993533
686	71		14	14	0.984337
704	85		14		0.993533
712	14		85		0.993533
740		14		85	0.993533
826	14			14	0.984337
827	85			14	0.993533
905	12			87	0.992554
906		12		87	0.992554
907	12			87	0.992554
908		87		12	0.992554
909		12		87	0.992554
953		14		85	0.993533
975	75		25		1.0
976	75		25		1.0
996	11			88	0.923564
997	11			88	0.923564
999		88	11		0.923564
1000		88		11	0.923564
1036	10	90			0.90298
1039	90		10		0.90298
1040			90	10	0.90298
1045		10		90	0.90298
1064		20		80	0.999996
1073		10	90		0.90298
1075			90	10	0.90298
1084	88		11		0.923564
1169	90		10		0.90298
1272	25		75		1.0
1290	88		11		0.923564
1313		88	11		0.923564
1336			75	25	1.0
1380	85		14		0.993533
1454	88			11	0.923564
1531		90		10	0.90298
1537		10		90	0.90298
1758	88			11	0.923564
1760	11			88	0.923564
1813		12		87	0.992554
1824	87			12	0.992554
1989	14		85		0.993533
1992		85		14	0.993533
2024	20		80		0.995493
2789		44		55	1.0
2794	25		75		1.0
2824		12		87	0.992554
2830			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain