SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210496

Length: 177 nt

UniGene Fasta

>sp_v3.0_unigene210496
TACAGCAAATGTGGGTGTTCTAATATCGGTAACGACGTTCATGGAGGATACGAGTTCGTGTATCAGACTGCTTCTGCTTACAACACGGCCAACTGCAAAGGCGTTGCTCAGACCCGTTTTTCTGGCAGTGTTAATCAAGTTTGCAGCGGTTTTGGTTGGAAGAGTTTTTTCATCCAG

Ace file of the UniGene sp_v3.0_unigene210496

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Antimicrobial peptide 1 n=2 Tax=Pinus RepID=Q71QE0_PINSY	-	-	4.0e-26	91%
FL-Next	tr=Antimicrobial peptide 1; Pinus pinaster (Maritime pine).	-	-	0.0	95%
Sma3	Antimicrobial peptide 1	-	-	9.11e-13	-

Source	Gene names
Sma3	AMP1; AMP2; AMP3; AMP4;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	xenobiotic metabolic process	GO:0006805	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	negative regulation of growth	GO:0045926	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Antimicrobial protein MiAMP1	IPR015201	-	0.0	-
Sma3	Antimicrobial/protein inhibitor, gamma-crystallin-like	IPR015791	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D9IWD8

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 59 - 105

Fln protein: YSKCGCSNIGNDVHGGYEFVYQTASAYNTANCKGVAQTRFSGSVNQVCSGFGWKSFFIQ

Protein Length: 60

Fln nts: TACAGCAAATGTGGGTGTTCTAATATCGGTAACGACGTTCATGGAGGATACGAGTTCGTGTATCAGACTGCTTCTGCTTACAACACGGCCAACTGCAAAGGCGTTGCTCAGACCCGTTTTTCTGGCAGTGTTAATCAAGTTTGCAGCGGTTTTGGTTGGAAGAGTTTTTTCATCCAG

Fln Alignment:

R_6m_Euler_294___YSKCGCSNIGNDVHGGYEFVYQ--TASAYNTANCKGVAQTRFSGSVNQVCSGFGWKSFFIQ
D9IWD8________________YSKCGCSNIGNDVHGGYEFVYQGQTASAYNTANCKGVAQTRFSGSVNQACSGFGWKSFFIQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain