SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17543

Length: 3060 nt

UniGene Fasta

>sp_v3.0_unigene17543
CGTCGTGACCTTGGCTGTCACTCCGTCATTTTCATCGTTCAAAGCGGTTACAAGGGTTCGAATTCTAAGATTGAAACCCTCAAATACTCGTCGAGTTCCGCATAAAAGCCCGCAGACGGTCGTCTCTGGAGATAGCTTAACGTACGCAGAGTGATTGGCTGTGTAAAGACGTTTATTTTCAGGTGGTTTGCAGGCATTTTTGGTATGGTCTCCATGGATCGGAGATGGATTCCATTGCTTTTGGCTCTGCTGTGCCTAATGTCACCGTTAAATGCCCTCGTTTCCGCTTCTGAATCGACTTTCTATGAATCTTTTGACGAGTCGTTCGAAGGGAGATGGATCGTATCCCAAAAGGAAGATTATAAAGGTGTATGGAAGTACGAAAAGAGTAAAGGTCATGAAGACTATGGTCTCCTTGTGAGTGAAGTGGCCAGAAAGTATGCCATAGTAAGAGAATTACCAGAGACCATTGACCCCAAGGACGGGTCACTGGTGTTACAGTATGAGGTCCGCTTACAAAATGGGCTGGAGTGTGGAGGTGCTTACTTGAAGTACCTACGGCCTCAAGAAGCTGGATGGAAACCAGCAGAGTTTGACAATGAATCCCCCTACTCCATCATGTTTGGACCAGATAAATGCGGTGCTACTAACAAAGTACACTTCATCTTCAAGCACAAGAATCCAAAGTCCGGGGAATATGTTGAGCACCATCTCAAGTATCCTCCATCTACGCCCTCTGACAAGAAGACTCATGTTTATTCAGCCATCTTGACACCTGATAATCAAGTTAGAATTTTAATTGATGGCGAAGAGAAGAAAAAGGCAAATCTTTTGTCTGCGGATGATTTTGAACCCGCCCTTATCCCACCTAAGACAATTCCCGACCCAGAGGATAAGAAGCCAGAAGACTGGGATGAGAGAGCAAAGATCCCTGATCCTGATGCGGAAAAGCCCGAGGACTGGGATGAGGATGCACCGATGGAAATTGAAGATTTGGAAGCCGTGAAGCCGGAAGGATGGCTGGATGATGAACCAGAGGAGATTGATGATCCTGAAGCTACAAAGCCAGATGATTGGGATGATGAAGAAGATGGAGAATGGGAGGCACCAAAGGTTTCTAATCCCAAGTGCGATGAGGCACCAGGATGTGGTGAATGGACTAGACCCATGAAGAGCAACCCTGACTACAAGGGCAAGTGGTATGCTCCGATGATTGACAATCCTAACTACAAGGGTATCTGGAAGCCACAAGAAATTCCCAACCCTGAGTACTTTGAATTGGAGAAGCCTGATTTAGAACCAATTGCAGCTATTGGTATTGAAATCTGGACTATGCAAGATGGAATCTTGTTTGACAACATACTTATCACACATGATGAGAAGGTTGCGGAGGAGTACAGAAAGAATGCGTGGAAGGGAAAATTTAGCAATGAAAAAGAAGAGGAAGATGTGGATAGTCCTCTGCCGGGAGAGCTCTCTGGTTTCCAGAAGAAAATTTTTGACGTCCTCTACAAGATCGCAAACATCCCATTCTTGGATGCATACAAGTTGAAGATTATTGATCTAATCGAACAAGGTGAGAAGAAACCAAATTTGACAATAGGCATTTTAGTGGCCGTTTTGGTGGTTCTGTTGACAACAATTTACAAGCTCCTTTTCGGTGGCAAGAAGCAACCTGTTCAGAAGGTAGAGTTGAAAAGTCAGCCCGAGCAGGATGCTTCTGCTTCTGAGAATAACAAAGAAGATTCAGATCGTGCAGCAGAGAATGAAAAATCTGATGCAGCAGAGAAGGAAAAGTCTGGAGATGAAAATGAAATAGAAGGAGAAGATGCAGCTCCCCGCAGGAGAGTAAGGCGCGAGACATAAATCGTAGTTCACTGAGGAAAAATTTCGGACATTAAAGTTCAGTGTATGGAATGAACAAATCTTTCAAAATTCATCCATCTGTTTTTGGTTGTAAGTCATAGATAAAATAGGAGGAACGGTCAGAGAATCTGCATCCCCATCATGCGTGGTGGATTTGGATAACATTTTTTCCAGAGTTCTGTTTCTAGGTGTTTGTTAGACATTGGAAGCATAGCTTTTTTTTATTTTATTTTGCTTATTGAAAATGAGCTGACCTCTAGATGTGTTGTAAAACCCCACTCATTTGCGAAATTGTTATCCAAATCCACCACGCATGATGGGGATGCAGATTCTCTGACCGTTCCTCCTATTTTATCTATGACTTACATACCAAAACAGATGGATGAATTTTGACAGATTTGTTCATTCCATACACTGAATGTCCGAAATTTTTCCTCAGTGAACTAGGATTTATGTCTCGCGCCTTACTCTCCTGCGGGGAGCTGCATCTTCTCCTTCTATTTCATTTTCATCTCCAGACTTTTCCTTCTCTGCTGCATCAGATTTTTCATTCTCTGCTGCACGATCTGAATCTTCTTTGTTATTCTCAGAAGCAGAAGCATCCTGCTCGGGCTGACTTTTCAACTCTACCTTAGGTTGCTTCTTGCCACCGAAAAGGAGCTTGTAAATTGTTGTCAACAGAACCACCAAAACGGCCACTAAAATGCCTATTGTCAAATTTGGTTTCTTCTCACCTTGTTCGATTAGATCAATAATCTTCAACTTGTATGCATCCAAGAATGGAATGTTTGCGATCTTGTAGAGGACGTCAAAAATTTTCTTCTGGAAACCAGAGAGCTCTCCCGGCAGAGGACTATCCACATCTTCCTCTTCTTTTTCATTGCTAAATTTTCCCTTCCATGTATTCTTTCTGTACTCCTCCGCAACCTTCTCATCATGTGTGATAAGTATGTTGTCAAACAAGATTCCTCTTGCATAGTCCAGATTTCAATACCAATAGCTGCAATTGGTTCTAAATCAGGCTTCTCCAATTCAAAGTACTCAGGGTTGGGAATTTCTTGTGGCTTCCAGATACCCTTGTAGTTAGGATTGTCAATCATCGGAGCATACCACTTGCCCTTGTAGTCAGGGTTGCTCTTCATGGGTCTGGTCCATTCACCACATCCCGGTGCCTCATCGCACTTGGGATCCCAT

Ace file of the UniGene sp_v3.0_unigene17543

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calnexin-like protein [Solanum lycopersicum]	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Calnexin	-	-	2.105e-15	-

Source	Gene names
Sma3	At1g56340; At5g07340; At5g61790; CAX1; CHLREDRAFT_108711; CNX; CNX1; CRH2; EEF22; GSVIVT00006229001; GSVIVT00011650001; GSVIVT00022619001; Gm cnx-1; LOC_Os03g61670; LeCNX61.0; MAC9.11; MICPUCDRAFT_2468; MICPUN_67567; OSJNBa0078D06.28; OSJNBb0012E08.10; OS

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	Calreticulin/calnexin	IPR001580	-	-
Sma3	Calreticulin/calnexin, P	IPR009033	-	-
Sma3	Calreticulin	IPR009169	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Calreticulin/calnexin, conserved site	IPR018124	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G61790.1	CNX1, ATCNX1 calnexin 1 chr5:24827394-24829642 REVERSE LENGTH=530	68%
RefSeq	Arabidopsis thaliana	NP_200987.1	calnexin 1 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002321768.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1384	97		2		0.953846
2083		90		9	0.999872
2084		33		33	0.997753
2169		66		33	0.997452
2170	66			33	0.997452
2617	12		75	12	0.975346
2618	87		12		0.992554
2620		87	12		0.992554
2621	87			12	0.992554
2766	25	75			0.996473
2830	66	33			0.997452
2832		66		33	0.997452
2833	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain