SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10416

Length: 3844 nt

UniGene Fasta

>sp_v3.0_unigene10416
GATAAAATCGAATAGATCAAAACATTATATATATCATTACTACAAACTACACAATCATAAAGTCACCCTAGTCCACACTATTGGATCAGACTTTTGTGCAAAAGCAAGTACTTCCACTATTCTCTGAATATTCTCCCGTGCACTCATGTATTATATATATTGAGAGACATTAATAGCAGAACTGTTGTGCCATATATATCATGAGTTACACTAGGAGCTAAACATTTGCCTTCCGAGTTTCTGGTATGCACTCTCTATATACACGAGTCATTTGATCAACCTCATACTAAATTCCCAGAGCTTCATTGCAAGATCTTTGTCCTGGGCAAAGGCGCTTGGGTTTATTTCATTACAATCATCGAAGTACTTGCCACCAACTCCTTTCAGGTCTGGATGCAAGGCAACATAGCATGTAGTGGCAGCTCTCATTAGATTCATGGAATGCCGCATCAAATTAGTCATAATGAATCCCGGATGAATTGAGTTTGCAGTGACATTTGCTCCTTCCTCCTTTAAGCGCCGTGACAACTCCTTGGCATGCAAAATGTTGGCTAACTTGGATTGCCCATACGCTTTTTTATCTGAATATCCACTCTCATCATTTATCTTGTCGAACCGTATCCCTTCTTCATATGTAAGAAAGTGTGCAACGGATGAAAGATTCACAACCCGTCCTTCAACTCCGGTCTCTTTTGCAGTCTTTTTCATGTTATCAAGCAGCAAATTTGTCAATAGGAAATGGCCTGCAAAAGTAGAACCAATCAAGTTGGTTTATAAAAACTACAATAGAATAATGCTCCAGCATAAATGACGATGCTTCGTATAAGAAACTTATGAACTTTGATGTTTGATTCAAATGTTTTACTTAAAAAGAGCTCCACTGGCCCCTTTAAAACACTAGGACCGTTTCATTAAATATGGAATTACTGTCGATACTTGATTTCAGTACCTAAAGGCTGTCCATTGTCAAATTTAACTCTTTTGTCTCCAAATCCTGGTTGCTTTGTCAGTAGTTTTCTAGCATTAATAACATATGTTGACCAGCTGTACATTATCCAAAATTCAAACAACTTCTAAAATTTCTCAAACCCCAAAGATTTTACACTGCCTTCCCAAGCATTATCATAAGAAGACGGGAAAACACCATCAAATAGCAATATAATATGAACTTGAGAAAGTATATCTCAATCACGGAGATCTGTTAGCTGACATAATTGATAATTGCCACTGTCCACCCACCCTTCCGTAAAGAACAATGTTAATAGCATGAATATAGGCTTATCTACGGAATGACTACTATGGTATAGATGCCTTCAAATAGTTACCTCTGTCTCCTTTTTACATGATTTATCATCCCTTGGCCACCATGAAAAACTATCTGAAACAAACTTTTTGCATGTTATCAAGCAGAAATATCTGTCAGTAGGAACATAGCCTACATGATTTGTTGCAAATTGCATCTCTAGGCCATCCTCTGAAAGCTTGAAGGGGCAAAACATAACCCCAGCATTATTTATTAAAATATTGAGCGGAAGGTTCAAGGCGTGAAAATCATTAGCGAACTTCTTGACAGATTCCATGGAGGACAAATCCAGTGGCAAAACATCGACTCGAGCGCCCTTAATCTGTCTAAGAATATCATCTTTAACAGCCTTCCCAGCTTCCACATTCCTTACACCAATGATCACATGCGCACCTCGTAGTGCCAGTACTCTCACAGTCTCCGCTCCAATTCCACTCGCTCCCCCAGTGACAATTGCTGTGATATTCGAAGCATCGATTCCTTCAGTAACTTCTTCAGCAGTGGAGGCCGATCCAAACCCACTGGAACCAGCCTTTCCCGTTACAAGCGAAAGAAGTCCCATCATTGAATTAAAACCGATAGTGAGCAACAATAAATCGTCGATGAGAATAGGATTCTGTTGAGAATCTGGCGCTATAAAATGATCCTGGTATATATCAATCTCAAATTCGCATCAACGCTCTCCCAACCAACAAAACCAAAAAGAAAGGCATGAAATATGTGATCTTGCACAGCCGAGATAAAGGATACACTAAATGAATGAATATCTCCTCTCCTGCACAGCCGAGATAAAGGATTACACTAAACGAATGAATATCTCCTCTCCTTCAATATTCCTAGTCTACCGGCATGGATGGTGCCTCACTCTGCCCAAACTCATGACACTAAGCAAACACAAAGTGTAAAGAGTGTGGGCAGAGTGAGGCACCATCCATGCCGGTAGACTAGGAATATTGAAGGAGAGGAGATATTCATTCGTTTAGTGTAATCCTTTATCTCGGCTGTGCAGGAGAGGAGATATTCATTCATTTAGTGTATCCTTTATCTCGGCTGTGCAAGATCACATATTTCATGCCTTTATTTTTGGTTTTGTTGGTTGGGAGAGCGTTGATGCGAATTTGAGATTGATATATACCAGGATCATTTTATAGCGCCAGATTCTCAACAGAATCCTATTCTCATCGACGATTTATTGTTGCTCACTATCGGTTTTAATTCAATGATGGGACTTCTTTCGCTTGTAACGGGAAAGGCTGGTTCCAGTGGGTTTGGATCGGCCTCCACTGCTGAAGAAGTTACTGAAGGAATCGATGCTTCGAATATCACAGCAATTGTCACTGGGGGAGCGAGTGGAATTGGAGCGGAGACTGTGAGAGTACTGGCACTACGAGGTGCGCATGTGATCATTGGTGTAAGGAATGTGGAAGCTGGGAAGGCTGTTAAAGATGATATTCTTAGACAGATTAAGGGCGCTCGAGTCGATGTTTTGCCACTGGATTTGTCCTCCATGGAATCTGTCAAGAAGTTCGCTAATGATTTTCACGCCTTGAACCTTCCGCTCAATATTTTAATAAATAATGCTGGGGTTATGTTTTGCCCCTTCAAGCTTTCAGAGGATGGCCTAGAGATGCAATTTGCAACAAATCATGTAGGCCATTTCCTATTGACAAATTTGCTGCTTGATAACATGAAAAAGACTGCAAAAGAGACCGGAGTTGAAGGACGGGTTGTGAATCTTTCATCCGTTGCACACTTTCTTACATATGAAGAAGGGATACGGTTCGACAAGATAAATGATGAGAGTGGATATTCAGATAAAAAAGCGTATGGGCAATCCAAGTTAGCCAACATTTTGCATGCCAAGGAGTTGTCACGGCGCTTAAAGGAGGAAGGAGCAAATGTCACTGCAAACTCAATTCATCCGGGATTCATTATGACTAATTTGATGCGGCATTCCATGAATCTAATGAGATTTTTGAAGTTTTTCTCTCGTTTCCTGTGGAAGAATGTTCCTCAGGGAGCTGCCACTACATGCTATGTTGCCTTGCATCCAGACCTGAAAGGAGTTGGTGGCAAGTACTTCGATGATTGTAATGAAATAAACCCAAGCGCCTTTGCCCAGGACAAAGATCTTGCAATGAAGCTCTGGGAATTTAGTATGAGGTTGATCAAATGACTCGTGTATATAGAGAGTGCATACCAGAAACTCGGAAGGCAAATGTTTAGCTCCTAGTGTAACTCATGATATATATGGCACAACAGTTCTGCTATTAATGTCTCTCAATATATATAATACATGAGTGCACGGGAGAATATTCAGAGAATAGTGGAAGTACTTGCTTTTGCACAAAAGTCTGATCCAATAGTGTGGACTAGGGTGACTTTATGATTGTGTAGTTTGTAGTAATGATATATATAATGTTTTGATCTATTCGACTAAATCATGGATTTTGTGATTGAATGGTAGTTATTTGTGAAACATTAAGTAATGTCTCATAATAGCTTAATCGTAGTTAATCGTAGTTATATTACAGAGGTTTT

Ace file of the UniGene sp_v3.0_unigene10416

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putativepod-specific dehydrogenase SAC25 n=5 Tax=Arabidopsis RepID=Q8LCE7_ARATH	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Short-chain dehydrogenase, putative	-	-	3.848e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protochlorophyllide reductase.	EC:1.3.1.33	-	1.118e-18	-

Source	KEGGs	Term	e value	Identity
Sma3	Porphyrin and chlorophyll metabolism	00860	1.118e-18	%
Sma3	Metabolic pathways	01100	1.118e-18	%
Sma3	Biosynthesis of secondary metabolites	01110	1.118e-18	%

Source	Gene names
Sma3	6J23.19; AT4g11410; AT4g23420; AT4g23430; AT4g24050; At1g64590; At2g37540; At4g11410; At4g23420; At4g23430; At4g24050; At5g02540; At5g50130; CHLREDRAFT_117748; F16G20.120; F16G20.130; GSVIVT00000434001; GSVIVT00006681001; GSVIVT00016020001; GSVIVT00023046

Source	GOs	Term	Type	Identity
Sma3	chloroplast inner membrane	GO:0009706	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	cell death	GO:0008219	Biological Process	-
Sma3	iron-sulfur cluster assembly	GO:0016226	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NIF system FeS cluster assembly, NifU, C-terminal	IPR001075	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G02540.1	NAD(P)-binding Rossmann-fold superfamily protein chr5:568609-570720 FORWARD LENGTH=331	70%
RefSeq	Arabidopsis thaliana	NP_568102.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002309049.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
976		20		80	0.995493
1275		16		83	0.994512
1390	75		25		0.996473
1391	75			25	0.996473
1404	75			25	0.996473
1413			25	75	0.996473
1414	75	25			0.996473
1415	25			75	0.996473
1418	75			25	0.996473
1419		75		25	0.996473
1422			75	25	0.996473
1423	66	33			0.997452
1425	33		66		0.997452
1427	33	66			0.997452
1428		66	33		0.997452
1431	66		33		0.997452
1434	50		50		1.0
1501	83	16			0.994512
1858	92	7			1.0
1871		5	94		0.998894
1872	94	5			0.998894
1879	90	3			0.997544
2008	80			20	0.999996
2075	10	90			0.90298
2095	88	11			0.923564
2096	88	11			0.923564
2177	81			18	0.999994
2178	18	81			0.999994
2179	81		18		0.999994
2180		81		18	0.999994
2183	20	10		70	0.999998
2184			10	90	0.90298
2185	10		20	70	0.999998
2187		70	20	10	0.999998
2188	77	22			0.999999
2190		22		77	0.999999
2191	22	22		55	0.999999
2193	22	11		66	0.999999
2194		28	71		1.0
2195		71		28	1.0
2196	42	28	28		1.0
2197	57	14		28	1.0
2198	42	14		42	1.0
2199	14	42	14	28	1.0
2200	42		28	28	1.0
2202	40			60	1.0
2203	40			60	1.0
2207		40	60		1.0
2209	40	60			1.0
2211	40			60	1.0
2216			40	60	1.0
2991	75			25	0.996473
2992		75	25		0.996473
2993	75		25		0.996473
2994			25	75	0.996473
3412	97		0		0.93956
3561	97		2		0.972772
3738	16			83	0.994512
3739	16			83	0.994512
3740	16	83			0.994512
3741	25		75		0.996473
3743	25	75			0.996473
3744	25			75	0.996473
3745	33			66	0.997452
3746	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain