SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6204

Length: 4065 nt

UniGene Fasta

>sp_v3.0_unigene6204
CGTCGTGACCTTGGCTGTCAGCAGAGGGCTCTCGAGTTTTGCATTGCATTGCAGTGCTCCACGGCGACAGAGATCTGTTGGAGTCGTTAATCAATCACGCATTTGATAATGGATATCAACGATGAAGCCGTTTTGGCACATAAGCGCACTTTTATGGACTTTTTGGATCAAGATGTGGGGCAAGGCGTTTACATGGACAAGATCAGGAGTATGATCACACAGGGTCGCCATCGCTTGCTTATAGACATGGCAGATCTGCGAAACTTTAACCTTGACTTAACTCGCAGGTTGATTCGGAATCCCGGTGAGTACTTTCAACCGTTTTCTGATGCGTTGGTTGAGGTTACGAGGAATGTGGATCCCAAGTATCTTCGGGAGGGGCAGCAAATTCAAGTGGGGTTTGAAGGGCAATTTGGCTTTCACAAGCTCACCCCCAGAGAGCTTCTTTCTCCGTTCCTTGGCAGCTTGGTCAGTGTGGAGGGAATCGTTACAAAGTGTTCCTTAGTACGGCCAAAGGTTGTAAAGAGTGTCCACTATTGTCCCACCACTGGAGAATTCACATCCCGTGAATACCGAGACATTACATCAGCTACTGGCCTACCCACAGGTTCTGTGTATCCTACACGAGATGACCAAGGGAATTTGTTAGTGACCGAGTTTGGTCTGTGCAAATATAAAGACCATCAAACAATATCCATGCAAGAAGTGCCTGAAAACTCTGCTCCAGGGCAGCTTCCTAGGTCAGTTGATCTCATTCTAGAGGATGACCTTGTGGATACTTGCAAGCCTGGAGACCGTGTCACAGTTGTAGGAATCTACAAAGCAATTCCTGGCAAGAGCCAGGGCAATGTTAATGGGGTCTTCAGGACGGTCATTGTTGCCAACAATGTCTCCCAGCTAAATAAAGAGATAAACACTCCTATTTTTACAAGTGATGATATCAAAAACATCAAGAAAATAGCAAATAGACAGGATACGTTTGGTTTACTGGCAGACTCACTCGCTCCATCAATCTATGGGCACACTTGGATAAAGAAAGCTGTCATTTTACAGCTACTGGGGGGAGTGGAGAAGAATCTCAAGAATGGAACTCACTTAAGAGGGGATATCAACATGATGATGGTTGGTGATCCATCTGTGGCTAAGTCCCAACTGTTGAGGGCTATTATGAATATTGCTCCTTTAGCAATTTCAACCACAGGTCGAGGATCCTCTGGTGTAGGTTTGACAGCAGCTGTCACTTCTGACCAAGAAACGGGTGAACGCCGGTTAGAAGCTGGAGCAATGGTTTTGGCCGACCGTGGTGTTGTTTGCATTGATGAATTTGATAAGATGAGTGATCAAGATCGTGTGTCCATCCACGAGGTTATGGAGCAACAGACAGTAACAATTGCTAAAGCTGGCATTCACGCATCACTTAATGCACGTTGTAGTGTGGTTGCTGCTGCAAATCCTATATATGGCACATACGACCGCTCACTTACTCCAACCAGGAATATTGGTCTTCCAGATTCTTTACTCTCTCGTTTTGATCTGCTATTTATTGTTCTTGATCAAATGGACCCCGATGTTGATCGCCGAATATCTGAGCATGTTCTACGCATGCATCGTTATCGCTCTTCAGGCGAAGATGGCGGGATGGTGGTGGCTGATGAAAATTCAAGACAAACAGAAGAAGATGATCCAGAGTTGGCAACATCGATCTTTGTGAAATACAATCGTCTGCTGCATGGCGAGAGAAAGACGAGGCACTTCAAAAGTGAGAACCTCACTGTTAAATTCTTAAAGAAATACATTCATTATGCTAAGAGCAGACATCAACCTGTTCTGACGGATGAGGCATCAGAACATATTGCATCTACGTATGCTGAGATGCGTAATGCAGGCTCAGAAGCTAAGTCTGGGGGAGGGACATTACCAATCACTGCACGTTCGTTGGAGACTATAATTCGTCTTTCAACAGCTCATGCCAAGATGAAATTGAGGAATCAGGTGTTAAAATCAGATGTAGAGTCTGCCCTAAAAGTCCTCAATTTTGCTATATACCACACTGAGCTGACAGAAATGGAGGAAAGGGAGCGAGAAATGCAGAGGAAACAACAGGCTGATGGTGGTCCTGGAGATGATGGACATGATGATAACAACGATGATCATCCAAATGGTACCGGAAACACACAGAGGCAAAGAAGACGGAAGCATGGCAGTGGAGGTGAAGGCAATGGTGGAACCCAAACACAATCAACTGTCCCTGATGAAAGAGCAGAAGATATGGATATAGATGGGTTAAATGCAGCTTCAGAAATGGACATTTCAACTGAAAGAGAAGATAGATTCAATGCAGCATTCAGTCAGTATATGATGGTTAATCACTTGGAGCAAATAAGTATGGATAGAATAGGAAATGTTGTTAATAGGGGGAATACTCAAGATCCATTCACACAGGCTGAGATAACATGCCTGCTACAGAGATTGCAAACTGCAAACAGATTGATGATAATGGATCAAGTTGTTTACCTTGTTTGAATGATAGCATATATAAAGCCAATCCAGTGTCTCTGTATTTGAGGTGCAGAAAAGAAACAGGGGCTTAGCAAAAGTTTAACATACAAAGAATGCCTCTGAGTTGGTTTAGTTATTTTTCTGCACCTCAAATACAGAGACACTGGATTGGCTTTATATATGCTATCATTCAAACAAGGTAAACAACTTGATCCATTATCATCAATCTGTTTGCAGTTTGCAATCTCTGTAGCAGGCATGTTATCTCAGCCTGTGTGAATGGATCTTGAGTATTCCCCCTATTAACAACATTTCCTATTCTATCCATACTTATTTGCTCCAAGTGATTAACCATCATATACTGACTGAATGCTGCATTGAATCTATCTTCTCTTTCAGTTGAAATGTCCATTTCTGAAGCTGCATTTAACCCATCTATATCCATATCTTCTGCTCTTTCATCAGGGACAGTTGATTGTGTTTGGGTGCCACCATTGCCTTCACCTCCACTGCCATGCTTCCGTCTTCTTTGCCTCTGTGTGTTTCCGGTACCATTTGGATGATCATCGTTGTTATCATCATGTCCATCATCTCCAGGACCACCATCAGCCTGTTGTTTCCTCTGCATTTCTCGCTCCCTTTCCTCCATTTCTGTCAGCTCAGTGTGGTATATAGCAAAATTGAGGACTTTTAGGGCAGACTCTACATCTGATTTTAACACCTGATTCCTCAATTTCATCTTGGCATGAGCTGTTGAAAGACGAATTATAGTCTCCAACGAACGTGCAGTGATTGGTAATGTCCCTCCCCCAGACTTAGCTTCTGAGCCTGCATTACGCATCTCAGCATACGTAGATGCAATATGTTCTGATGCCTCATCCGTCAGAACAGGTTGATGTCTGCTCTTAGCATAATGAATGTATTTCTTTAAGAATTTAACAGTGAGGTTCTCACTTTTGAAGTGCCTCGTCTTTCTCTCGCCATGCAGCAGACGATTGTATTTCACAAAGATCGATGTTGCCAACTCTGGATCATCTTCTTCTGTTTGTCTTGAATTTTCATCAGCCACCACCATCCCGCCATCTTCGCCTGAAGAGCGATAACGATGCATGCGTAGAACATGCTCAGATATTCGGCGATCAACATCGGGGTCCATTTGATCAAGAACAATAAATAGCAGATCAAAACGAGAGAGTAAAGAATCTGGAAGACCAATATTCCTGGTTGGAGTAAGTGAGCGGTCGTATGTGCCATATATAGGATTTGCAGCAGCAACCTTTACACTACAACGTGCATTAAGTGATGCGTGAATGCCAGCTTTAGCAATTGTTACTGTCTGTTGCTCCATAACCTCGTGGATGGACACACGATCTTTGATCACTCATCTTATCAAATTCATCAATGCAAACAACACCACGGTCGGCCAAAACCATTGCTCCAGCTTCTAACCGGTGTTCACCCGTTTCTTGGTCAGAAGTGACAGCTGCTGTCAAACCTACACCAGAGGATCCTCGACCTGTGGTTGAAATTGCTAAAGGAGCAATATTCATAATAGCCCTCAACAGT

Ace file of the UniGene sp_v3.0_unigene6204

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA replication licensing factor MCM3 homolog 2 [Zea mays] sp\|Q9SX04.1\|MCM32_MAIZE RecName: Full=DNA replication licensing factor MCM3 homolog 2; AltName: Full=Replication origin activator 2; Short=ROA-2 gb\|AAD48086.1\|AF073330_1 replication origin activat	-	-	0.0	66%
FL-Next	sp=DNA replication licensing factor MCM3 homolog 3; Zea mays (Maize).	-	-	0.0	66%
Sma3	Minichromosome maintenance protein 3	-	-	2.202e-08	-

Source	Gene names
Sma3	At5g46280; CHLREDRAFT_108537; CHLREDRAFT_115083; GSVIVT00003433001; MCM2; MCM3; MICPUCDRAFT_31581; MICPUN_77461; MPL12.6; Mcm3; OSTLU_119520; Os05g0173700; Os05g0476200; OsI_20328; OsJ_18914; Ot02g00960; Ot02g04010; PHATR_51597; POPTRDRAFT_1076201; POPTRD

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Mini-chromosome maintenance, DNA-dependent ATPase	IPR001208	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Mini-chromosome maintenance complex protein 2	IPR008045	-	-
Sma3	Mini-chromosome maintenance complex protein 3	IPR008046	-	-
Sma3	Mini-chromosome maintenance complex protein 4	IPR008047	-	-
Sma3	Mini-chromosome maintenance complex protein 5	IPR008048	-	-
Sma3	Mini-chromosome maintenance complex protein 7	IPR008050	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Mini-chromosome maintenance, conserved site	IPR018525	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G46280.1	MCM3 Minichromosome maintenance (MCM2/3/5) family protein chr5:18769902-18773606 REVERSE LENGTH=776	63%
RefSeq	Arabidopsis thaliana	NP_199440.1	DNA replication licensing factor MCM3-like protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002305335.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
702	11	88			0.923564
704	87		12		0.992554
899		14	85		0.993533
900	14	85			0.993533
902	85			14	0.993533
960	75			25	0.996473
1153	90		10		0.90298
1267	10		90		0.90298
1324	87		12		0.992554
1842	11		88		0.923564
1846		88		11	0.923564
2194			83	16	0.994512
2293		77	22		0.999999
2294	88		11		0.923564
2453	95		4		0.996599
2458			95	4	0.996599
2488			95	5	0.997749
2489	92			5	0.990091
2507	93	2		4	0.985381
2508		2	92	4	0.987114
2875		37		62	1.0
2922		90		10	0.90298
3066		80	20		0.999996
3072		20		80	0.999996
3073	10		90		0.90298
3076	90		10		0.90298
3077	10			90	0.90298
3078		90	10		0.90298
3079	90		10		0.90298
3080		10		90	0.90298
3081		90	10		0.90298
3083		20		80	0.999996
3085	11			88	0.923564
3087		88	11		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
39	53	TTGCA TTGCA TTGCA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain