SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4272

Length: 550 nt

UniGene Fasta

>sp_v3.0_unigene4272
TCCTCTTCCTCGTCCTCGTGGCTGCTGTTTTGACAGCAGAACACAGAGCAAATGCAGCAGGTCAATGTGCAGCGGAGTCAGAAGCGTGGAAGATGGCACCGTGCATTCAGGCCGCCCAGAATGCAAACGCTCCCGTCTCAACCGGCTGCTGCAACGCCATCCACAAGTACCACAACGAATTCCCCGCCCTTGGCCCCTTGCCCCAATTCAATGCTCTTCGAAAACAGGGAAAGCCGGGGGGGATCGATCCCGGGATAGCCATGACCATTCCCCAGCGCTGCCAGTTCTCTGACAGGCCCGTTGGTTACAAGTGCGGAGCCTACACTTTGCCCTGAAAATATGAAGAGGACTCCCTGGCCGCATATATTGCACCAGGGTCAGCCGAGATTTCGCCCTCTATATATAGGAATTACTAAATAATGGAGGAGCACATGTGTAGTCTTTGCTCCTATGTCATGCAATGACTGTTGCTCGACTTTGAAGAAGCTTAATGGCTTCTGTATGTGTGAGATGACTATAACTAAATAAAACATTGTAACTTCTGCAAAAG

Ace file of the UniGene sp_v3.0_unigene4272

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana] ref\|NP_850700.1\| bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana] emb\|CAB88360.1\| putative p	-	-	8.0e-18	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR003612	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G53980.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein chr3:19987760-19988203 REVERSE LENGTH=114	7.0e-24	46%
RefSeq	Arabidopsis thaliana	NP_850700.1	bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana]	9.0e-24	46%
RefSeq	Populus trichocarpa	XP_002315191.1	predicted protein [Populus trichocarpa]	2.0e-23	46%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN95

Fln msg: atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning,

Fln protein: LFLVLVAAVLTAEHRANAAGQCAAESEAWKMAPCIQAAQNANAPVSTGCCNAIHKYHNEFPALGPLPQFNALRKQGKPGGIDPGIAMTIPQRCQFSDRPVGYKCGAYTLP*

Protein Length: 112

Fln nts: TCCTCTTCCTCGTCCTCGTGGCTGCTGTTTTGACAGCAGAACACAGAGCAAATGCAGCAGGTCAATGTGCAGCGGAGTCAGAAGCGTGGAAGATGGCACCGTGCATTCAGGCCGCCCAGAATGCAAACGCTCCCGTCTCAACCGGCTGCTGCAACGCCATCCACAAGTACCACAACGAATTCCCCGCCCTTGGCCCCTTGCCCCAATTCAATGCTCTTCGAAAACAGGGAAAGCCGGGGGGGATCGATCCCGGGATAGCCATGACCATTCCCCAGCGCTGCCAGTTCTCTGACAGGCCCGTTGGTTACAAGTGCGGAGCCTACACTTTGCCCTGA___AAATATGAAGAGGACTCCCTGGCCGCATATATTGCACCAGGGTCAGCCGAGATTTCGCCCTCTATATATAGGAATTACTAAATAATGGAGGAGCACATGTGTAGTCTTTGCTCCTATGTCATGCAATGACTGTTGCTCGACTTTGAAGAAGCTTAATGGCTTCTGTATGTGTGAGATGACTATAACTAAATAAAACATTGTAACTTCTGCAAAAG

Fln Alignment:

Contig4272___ANAAGQCAAESEAWKMAPCIQAAQNANAPVSTGCCNAIHKYHNEFPALGPLPQFNALRKQGKPGGIDPGIAMTIPQRCQFSDRPVGYKCGAYTLP
B8LN95______________ANAAGQCVVESEATKMAPCVEAAQNANAPVSAGCCNAVHKFSTDPACLCSV----LLSKTAKDAGIDPAVAVSIPKRCQFSDRPVGYKCGAYTVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain