SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4103

Length: 3447 nt

UniGene Fasta

>sp_v3.0_unigene4103
GATACCACTGCTTAGCAGTGGTATCAACGCAGAGTACGCGGGCTAGTCTGTCGGAGAACGCAGCCCTGCGTGTTCGGTTCTGGTTGAAGGCTAGGGCTGTTATTGGCCCCACCATATCTCCACCTTCTCCAAGGTGCTTTTACACGTTAAAACCAAAGTCGACTCCAAAGGTACTCGTGTGGCAGGGGAGCGGCATTTTGCACTCTTTAAAAGGGTCTGCTCTCTTTCTTCGGAAGGCGACCGGTACAGTTGCAACACAACCTCTATCTTCTCAAACTCAGGAAGCAGACATGGAGGCGCCCAAGGAGATCTTTCTTGCGGACTACAAAGTGCCTGATTATTTATTTGACACAGTGGACTTGAAATTTGTATTGGGTGATGACAAAACAATTGTCCTGGCAAAAACAGTTGTTCAGCCTAGAATTGAAGGTATAGATCAGCCTTTGATTTTGAATGGATCTGACCTTAAACTGATCTCTATAAAAGTAAATGGAAAACAAGTTGAGAAAGGAGGTTTTCAGTTAACTCCACGCTCTCTCACATTGGTGTCCCCTCCAACATCAGTTTTCACATTGGAAATTGAGACAGAGATATATCCTCAACAGAATACGTCCCTGGAGGGTCTTTACAAGTCATCTGGCAACTTTTGCACTCAATGTGAAGCAGAAGGTTTCCGCAAAATAACTTTCTATCAGGATCGTCCAGATATATTGGCAAAATTTACAACTAGGGTTGAAGCAGATAAAACACTGTTTCCCGTACTATTGTCTAATGGAAATCTAATAGAGCAGGGGGATCTGCAGGATGGCAGACACTATGCTGTCTGGGAAGATCCTTTCAAGAAGCCTTGTTACCTATTTGCTTTGGTTGCTGGCCAATTAGTCAGTAGAAATGATACATTCATTACACGATCAGGACGCCAAGTTTCACTTCGCATTTGGACTCCTGCAGATGATATACCAAAGACTGCTCATGCCATGTATTCCCTTAAGGCGGCCATGAAATGGGATGAGGATGTCTTTGGTCTGGAATATGACCTTGATCTATTTAACATCGTGGCAGTACCTGATTTTAACATGGGAGCGATGGAGAACAAGAGCCTTAATATATTTAATTCAAGGCTTGTTTTGGCATCCCCAAAAACTGCAACGGATGCAGACTATGCTGCTATCTTGGGTGTTATTGGTCATGAGTATTTCCACAACTGGACTGGTAACAGGGTAACATGCCGGGATTGGTTTCAATTAAGTTTAAAGGAAGGACTTACAGTTTTCAGAGATCAGGAATTCTCATCTGACATGGGCAGTCGTGCTGTTAAGCGAATTGGAGATGTGGTGAAGCTTCGTAATTATCAATTTCCTCAGGACGCTGGTCCCATGGCTCACCCTGTGCGTCCACATTCATATATCAAGATGGACAATTTCTATACTGTAACGGTGTATGAGAAGGGAGCAGAAGTTGTCAGGATGTACAAGACCATGTTAGGGCAATCAGGGTTTCGTAAGGGAATGGATCTTTATTTTCAAAGACATGATGGGCAAGCAGTAACTTGTGAAGATTTCTTTGCTGCTATGCGTGATGCCAATAATGCAGATCTTTCAAATTTCTTGTTATGGTATTCACAAGCGGGAACCCCTGTTCTAAAAATGCAATCATCCTACAACTCTGAGGGAAATACTTATACACTTAAGTTCAGGCAAGAAATTCCTCCTACTCCAGGTCAATCAGTGAAAGAACCGATGTTTATACCTGTGGCCGTTGGGTTGCTGGATTCCAACGGAAAGGATCTGCCTCTTTCATCAGTCTATAATCGAGGATCTCTGCAGTCCTTTACTAGTGAAGGTCATTCCGTTTCAACAGTAATCCTCCGTATTGAAAAGGAGGAAGAAGAGTTTGTCTTTGTTGACATTCCTGAAAGACCAATTCCCTCTCTACTACGCAATTATAGTGCTCCTGTGCGTCTTGTTTCAGATATCACTGATGATGATTTGTACTTTCTACTTGCACATGATTCAGATGAGTTTAACCGGTGGGAGGCTGGCCAGACATTGGCAAGAAAACTCATGCTTTCTCTCGTAGATAAGGCACAACAGAATCAACCCTTGAGTGTGGACCCAAAATTTGTCAACGGACTAAGAAGTATTCTTTGTGATTCGAGTTTGGACAAAGAGTTCATAGCAAAGGCAATCACTCTACCTGGAGAGGGAGAAATCATGGACCTCATGGAAGTTGCAGATCCAGATGCTGTTCACGGAGTTCGTCGTTTTGTTAGAAAACAACTTGCGTCTGAATTGCGTGCAGAGTTTTGCAGAGCTGTTGAAACTAACCGAAGCTCAGAGGAATATGATCCTAATCACGAGAGCATGGCAAGACGTGCTTTGAAAAATACGGCCCTTGCTTACCTTGCCTCATTGAATGAGCCAGAAATGACAGAGCTTGTATTACATGAGTACAAATCAGCTACAAATATGACTGAACAATTTGCAGCTTTGGGTGCTATTGCCCAAAATGCCGGAGATGTACGAGATGAAGTTTTGTCTGATTTCTATCAGAAGTGGAAAGAAGATGCCTTGGTGATCAATAAGTGGCTTGCATTGCAAGCTGTCTCTGATATCCCGGGCAATGTTAAGAATGTACAAAGCTTGTTGGAGCACCCTGCTTTTGACATTCGGAATCCTAACAAGGTTTATTCTGTCATTGGAGGGTTCTGCAGCAGTAAGGTTAACTTCCATGCAAAAGATGGTTCTGGTTATGAATTCGTTGGAGATATGGTATTGAAGATAGATAAAATTAATCCACAGGTTGCATCCCGCACCATTTCAGCTTTCTCAAGGTGGAAGCGATTTGATGAGGGCAGACAAACTCTTGCAAAGGCTCAACTAGAGCGTATTCTATCATCCAATGGGTTGTCAGAAAACGTGTATGAGATTGCCTTGAAAAGTTTGGCTGCCTAGTTGCGTAGGATACGGTTCTCTCACTTGCAAGCTATGATACTTGAAGGGTTAACTCAAGACCTTAAGAATGGTATAATCTACACGTTGCGTGTTGAATGGTGAGATGCGGAGGCTGCGGTTACAACAAATCTTCGATGCTTGTTAATGAATGGTCATGGGTTAAATCTCGCCCTTTACAACTGTTCTTGTGCATGTATCCTGTCTTTTTGAGTACATTAAAAAAACAGTCGTTTATAGCAATCGATATAACGATCACAACAGTAGTCAACAATGGAATTGGATGTAATTATCGCATGTGAACTAGAAGACTAGCTGTATTAATTAATGTTGAGTGGATGTGCAGATCTGTAATCTAAGTAAAATTTTAAGTTTGCATAATCAGGTGCGGCAAACTGACAATCTGCATTCCTAAAGAACACAATTTAGAAAATTTTAATGTACTTGCATTTCATCTGTATGATTGTTTCTTTAGAAAATTACTAACGTTTCCATC

Ace file of the UniGene sp_v3.0_unigene4103

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidase M1 family protein n=8 Tax=Arabidopsis RepID=F4I3R0_ARATH	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G63770.5	Peptidase M1 family protein chr1:23657791-23664243 REVERSE LENGTH=1013	71%
RefSeq	Arabidopsis thaliana	NP_001117543.4	Peptidase M1 family protein [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002298026.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR09

Fln msg: atg_distance in limit (1-15): atg_distance = 10, W2: There is no M at the beginning,

Fln protein: YHCLAVVSTQSTRASLSENAALRVRFWLKARAVIGPTISPPSPRCFYTLKPKSTPKVLVWQGSGILHSLKGSALFLRKATGTVATQPLSSQTQEADMEAPKEIFLADYKVPDYLFDTVDLKFVLGDDKTIVLAKTVVQPRIEGIDQPLILNGSDLKLISIKVNGKQVEKGGFQLTPRSLTLVSPPTSVFTLEIETEIYPQQNTSLEGLYKSSGNFCTQCEAEGFRKITFYQDRPDILAKFTTRVEADKTLFPVLLSNGNLIEQGDLQDGRHYAVWEDPFKKPCYLFALVAGQLVSRNDTFITRSGRQVSLRIWTPADDIPKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSRLVLASPKTATDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRAVKRIGDVVKLRNYQFPQDAGPMAHPVRPHSYIKMDNFYTVTVYEKGAEVVRMYKTMLGQSGFRKGMDLYFQRHDGQAVTCEDFFAAMRDANNADLSNFLLWYSQAGTPVLKMQSSYNSEGNTYTLKFRQEIPPTPGQSVKEPMFIPVAVGLLDSNGKDLPLSSVYNRGSLQSFTSEGHSVSTVILRIEKEEEEFVFVDIPERPIPSLLRNYSAPVRLVSDITDDDLYFLLAHDSDEFNRWEAGQTLARKLMLSLVDKAQQNQPLSVDPKFVNGLRSILCDSSLDKEFIAKAITLPGEGEIMDLMEVADPDAVHGVRRFVRKQLASELRAEFCRAVETNRSSEEYDPNHESMARRALKNTALAYLASLNEPEMTELVLHEYKSATNMTEQFAALGAIAQNAGDVRDEVLSDFYQKWKEDALVINKWLALQAVSDIPGNVKNVQSLLEHPAFDIRNPNKVYSVIGGFCSSKVNFHAKDGSGYEFVGDMVLKIDKINPQVASRTISAFSRWKRFDEGRQTLAKAQLERILSSNGLSENVYEIALKSLAA*

Protein Length: 985

Fln nts: GATACCACTGCTTAGCAGTGGTATCAACGCAGAGTACGCGGGCTAGTCTGTCGGAGAACGCAGCCCTGCGTGTTCGGTTCTGGTTGAAGGCTAGGGCTGTTATTGGCCCCACCATATCTCCACCTTCTCCAAGGTGCTTTTACACGTTAAAACCAAAGTCGACTCCAAAGGTACTCGTGTGGCAGGGGAGCGGCATTTTGCACTCTTTAAAAGGGTCTGCTCTCTTTCTTCGGAAGGCGACCGGTACAGTTGCAACACAACCTCTATCTTCTCAAACTCAGGAAGCAGACATGGAGGCGCCCAAGGAGATCTTTCTTGCGGACTACAAAGTGCCTGATTATTTATTTGACACAGTGGACTTGAAATTTGTATTGGGTGATGACAAAACAATTGTCCTGGCAAAAACAGTTGTTCAGCCTAGAATTGAAGGTATAGATCAGCCTTTGATTTTGAATGGATCTGACCTTAAACTGATCTCTATAAAAGTAAATGGAAAACAAGTTGAGAAAGGAGGTTTTCAGTTAACTCCACGCTCTCTCACATTGGTGTCCCCTCCAACATCAGTTTTCACATTGGAAATTGAGACAGAGATATATCCTCAACAGAATACGTCCCTGGAGGGTCTTTACAAGTCATCTGGCAACTTTTGCACTCAATGTGAAGCAGAAGGTTTCCGCAAAATAACTTTCTATCAGGATCGTCCAGATATATTGGCAAAATTTACAACTAGGGTTGAAGCAGATAAAACACTGTTTCCCGTACTATTGTCTAATGGAAATCTAATAGAGCAGGGGGATCTGCAGGATGGCAGACACTATGCTGTCTGGGAAGATCCTTTCAAGAAGCCTTGTTACCTATTTGCTTTGGTTGCTGGCCAATTAGTCAGTAGAAATGATACATTCATTACACGATCAGGACGCCAAGTTTCACTTCGCATTTGGACTCCTGCAGATGATATACCAAAGACTGCTCATGCCATGTATTCCCTTAAGGCGGCCATGAAATGGGATGAGGATGTCTTTGGTCTGGAATATGACCTTGATCTATTTAACATCGTGGCAGTACCTGATTTTAACATGGGAGCGATGGAGAACAAGAGCCTTAATATATTTAATTCAAGGCTTGTTTTGGCATCCCCAAAAACTGCAACGGATGCAGACTATGCTGCTATCTTGGGTGTTATTGGTCATGAGTATTTCCACAACTGGACTGGTAACAGGGTAACATGCCGGGATTGGTTTCAATTAAGTTTAAAGGAAGGACTTACAGTTTTCAGAGATCAGGAATTCTCATCTGACATGGGCAGTCGTGCTGTTAAGCGAATTGGAGATGTGGTGAAGCTTCGTAATTATCAATTTCCTCAGGACGCTGGTCCCATGGCTCACCCTGTGCGTCCACATTCATATATCAAGATGGACAATTTCTATACTGTAACGGTGTATGAGAAGGGAGCAGAAGTTGTCAGGATGTACAAGACCATGTTAGGGCAATCAGGGTTTCGTAAGGGAATGGATCTTTATTTTCAAAGACATGATGGGCAAGCAGTAACTTGTGAAGATTTCTTTGCTGCTATGCGTGATGCCAATAATGCAGATCTTTCAAATTTCTTGTTATGGTATTCACAAGCGGGAACCCCTGTTCTAAAAATGCAATCATCCTACAACTCTGAGGGAAATACTTATACACTTAAGTTCAGGCAAGAAATTCCTCCTACTCCAGGTCAATCAGTGAAAGAACCGATGTTTATACCTGTGGCCGTTGGGTTGCTGGATTCCAACGGAAAGGATCTGCCTCTTTCATCAGTCTATAATCGAGGATCTCTGCAGTCCTTTACTAGTGAAGGTCATTCCGTTTCAACAGTAATCCTCCGTATTGAAAAGGAGGAAGAAGAGTTTGTCTTTGTTGACATTCCTGAAAGACCAATTCCCTCTCTACTACGCAATTATAGTGCTCCTGTGCGTCTTGTTTCAGATATCACTGATGATGATTTGTACTTTCTACTTGCACATGATTCAGATGAGTTTAACCGGTGGGAGGCTGGCCAGACATTGGCAAGAAAACTCATGCTTTCTCTCGTAGATAAGGCACAACAGAATCAACCCTTGAGTGTGGACCCAAAATTTGTCAACGGACTAAGAAGTATTCTTTGTGATTCGAGTTTGGACAAAGAGTTCATAGCAAAGGCAATCACTCTACCTGGAGAGGGAGAAATCATGGACCTCATGGAAGTTGCAGATCCAGATGCTGTTCACGGAGTTCGTCGTTTTGTTAGAAAACAACTTGCGTCTGAATTGCGTGCAGAGTTTTGCAGAGCTGTTGAAACTAACCGAAGCTCAGAGGAATATGATCCTAATCACGAGAGCATGGCAAGACGTGCTTTGAAAAATACGGCCCTTGCTTACCTTGCCTCATTGAATGAGCCAGAAATGACAGAGCTTGTATTACATGAGTACAAATCAGCTACAAATATGACTGAACAATTTGCAGCTTTGGGTGCTATTGCCCAAAATGCCGGAGATGTACGAGATGAAGTTTTGTCTGATTTCTATCAGAAGTGGAAAGAAGATGCCTTGGTGATCAATAAGTGGCTTGCATTGCAAGCTGTCTCTGATATCCCGGGCAATGTTAAGAATGTACAAAGCTTGTTGGAGCACCCTGCTTTTGACATTCGGAATCCTAACAAGGTTTATTCTGTCATTGGAGGGTTCTGCAGCAGTAAGGTTAACTTCCATGCAAAAGATGGTTCTGGTTATGAATTCGTTGGAGATATGGTATTGAAGATAGATAAAATTAATCCACAGGTTGCATCCCGCACCATTTCAGCTTTCTCAAGGTGGAAGCGATTTGATGAGGGCAGACAAACTCTTGCAAAGGCTCAACTAGAGCGTATTCTATCATCCAATGGGTTGTCAGAAAACGTGTATGAGATTGCCTTGAAAAGTTTGGCTGCCTAG___TTGCGTAGGATACGGTTCTCTCACTTGCAAGCTATGATACTTGAAGGGTTAACTCAAGACCTTAAGAATGGTATAATCTACACGTTGCGTGTTGAATGGTGAGATGCGGAGGCTGCGGTTACAACAAATCTTCGATGCTTGTTAATGAATGGTCATGGGTTAAATCTCGCCCTTTACAACTGTTCTTGTGCATGTATCCTGTCTTTTTGAGTACATTAAAAAAACAGTCGTTTATAGCAATCGATATAACGATCACAACAGTAGTCAACAATGGAATTGGATGTAATTATCGCATGTGAACTAGAAGACTAGCTGTATTAATTAATGTTGAGTGGATGTGCAGATCTGTAATCTAAGTAAAATTTTAAGTTTGCATAATCAGGTGCGGCAAACTGACAATCTGCATTCCTAAAGAACACAATTTAGAAAATTTTAATGTACTTGCATTTCATCTGTATGATTGTTTCTTTAGAAAATTACTAACGTTTCCATC

Fln Alignment:

Contig4103___LAVVSTQSTRASLSENAALRVRFWLKARAVIGPTISPPSPRCFYTLKPKSTPKVLVWQGSGILHSLKGSALFLRKATGTVATQPLSSQTQEADMEAPKEIFLADYKVPDYLFDTVDLKFVLGDDKTIVLAKTVVQPRIEGIDQPLILNGSDLKLISIKVNGKQVEKGGFQLTPRSLTLVSPPTSVFTLEIETEIYPQQNTSLEGLYKSSGNFCTQCEAEGFRKITFYQDRPDILAKFTTRVEADKTLFPVLLSNGNLIEQGDLQDGRHYAVWEDPFKKPCYLFALVAGQLVSRNDTFITRSGRQVSLRIWTPADDIPKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSRLVLASPKTATDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRAVKRIGDVVKLRNYQFPQDAGPMAHPVRPHSYIKMDNFYTVTVYEKGAEVVRMYKTMLGQSGFRKGMDLYFQRHDGQAVTCEDFFAAMRDANNADLSNFLLWYSQAGTPVLKMQSSYNSEGNTYTLKFRQEIPPTPGQSVKEPMFIPVAVGLLDSNGKDLPLSSVYNRGSLQSFTSEGHSVSTVILRIEKEEEEFVFVDIPERPIPSLLRNYSAPVRLVSDITDDDLYFLLAHDSDEFNRWEAGQTLARKLMLSLVDKAQQNQPLSVDPKFVNGLRSILCDSSLDKEFIAKAITLPGEGEIMDLMEVADPDAVHGVRRFVRKQLASELRAEFCRAVETNRSSEEYDPNHESMARRALKNTALAYLASLNEPEMTELVLHEYKSATNMTEQFAALGAIAQNAGDVRDEVLSDFYQKWKEDALVINKWLALQAVSDIPGNVKNVQSLLEHPAFDIRNPNKVYSVIGGFCSSKVNFHAKDGSGYEFVGDMVLKIDKINPQVASRTISAFSRWKRFDEGRQTLAKAQLERILSSNGLSENVYEIALKSLAA
B8LR09______________LGLASAISLRLSSGTRTIIGSASFLPARAVICPSISPPSGRCFYTYKPKSVPKVLVWQGSSILHSLKGSALFLRKATGTVATQPLSSQAQEADMEAPKEIFLADYKMPNYFFDTVDLKFALGDDKTIVLARTVVQPRIEGIDQPLILDGSNLKLISIKVNGKQVEKGGFQLTPRSLTLVSPPTSLFTLEIETEIYPQQNTSLEGLYKSSGNFCTQCEAEGFRKITFYQDRPDVLAKFTTRIEADKTLFPVLLSNGNLTEQGDLEDGRHYAVWEDPFKKPCYLFALVAGPLVSRDDAFITRSGRQVSLRIWTPADDISKTAYAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSRLVLASPQTATDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRAVKRIADVVKLRNYQFPQDAGPMAHPVRPHSYIKMDNFYTVTVYEKGAEVVRMYKTLLGQSGFRKGMDLYFQRHDGQAVTCEDFFAAMRDANDADFSNFLLWYSQAGTPVLKVKSSYNSEGNTYTLKIRQEIPSTPGQSVKEPMFIPVAVGLLDSNGKDLPLTSVYNGESLQSLTSEGHSVSTVILRIEKEEEEFVFVDIPERPIPSVLRNYSAPVRLVSDITDDDLYFLLAHDSDEFNRWEAGQTLARKLMLSLVDQAQQNQPLTIDPKFVNALRSILCDSSLDKEFIAKAITLPGEGEIMDRMEVADPDAVHGVRRFFIKQLASELRAEFLRAVKTNQSSEEYDPNHESMASRALKNTALAYLASLKEPEMTELVLHEYKSATNMTEQFAALAAISQNAGDVRDGVLSDFYQKWEGDALVINKWLALQAVSDIPGNVKNVQRLLQHPAFDIRNPNKVYSLIGGFCSSSVNFHAKDGSGYEFIGDMVLKIDKINPQVASRNISAFSRWKRFDEGRQTLAKAQLERILSSNGLSENVYEIALKSLAA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
383	10	90			0.90298
725	87		12		0.992554
1140	87	12			0.992554
1484		10		90	0.90298
1556	20		80		0.995493
2829		20		80	0.995493
3343			46	53	1.0
3353		84		15	1.0
3385	87	12			0.992554
3395		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain