SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4077

Length: 1901 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene4077 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	purple acid phosphatase 28 [Arabidopsis thaliana] sp\|Q9LU72.1\|PPA28_ARATH RecName: Full=Probable inactive purple acid phosphatase 28; Flags: Precursor dbj\|BAA97364.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM97046.1\| putative protein [Arabidop	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Phosphatase DCR2, putative	-	-	6.743e-09	-

Source	Gene names
Sma3	AT5G57140; At2g46880; At5g57140; At5g63140; F14M4.29; GSVIVT00006785001; GSVIVT00006787001; GSVIVT00026207001; GSVIVT00026209001; MDC12.10; MUL3.9; MtrDRAFT_AC148819g23v2; MtrDRAFT_AC148819g26v2; MtrDRAFT_AC148819g30v2; OJ1112_E07.8; Os06g0699200; Os09g05

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity	GO:0016787	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Phosphoesterase At2g46880	IPR011230	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G57140.1	ATPAP28, PAP28 purple acid phosphatase 28 chr5:23149926-23151370 FORWARD LENGTH=397	58%
RefSeq	Arabidopsis thaliana	NP_200524.1	purple acid phosphatase 28 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002309007.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXQ3

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 353 - 389

Fln protein: LPTLPLRFNENGQFKILQVADMHYANGAVTRCEDVLPSEFPSCSDLNTSAFLTRMIQSEKPDFIVFTGDNIYGPDSADAADSMDAAFAPAIKSKLPWAAVLGNHDQESTMTREELMLYLSVMDYSISKVNPLSDNPSDRQRFTVDGFGNYNIEVKGALGSELENKSVFNLYFLDSGDKSTVPGISGYGWIKESQQAWLRDVSALLQDTYKRGRAPQTDPAPALGFFHIPLYEVRYLGGSEIVGEMQEGVGCASINSGVLSTFVSTGDIKAVFTGHDHVNDFCGKYEGIWLCYGGGFGYHAYGKAGWSRRARVIMATLEKGEKTWQGVTSIKTWKRLDDTTFTKIDEQTLWSK*

Protein Length: 354

Fln nts: GGAGATGAATAGATTTGGTAAAAAAATCACATATAGGGGAATCGCTTCCAAGTAGTAAACCGGGTGGATACATCTCCATTACTCACGATCCACACGCTAAGATGAATAGATTCGGCTGACCACAATCGATTACCCAATGAAGAATGTTTGCAAGTCGAAGCAAATTTCCATTGGTATCTTGCATATTGGCGTCACCTATTGTTCTGTAGTTCGGTTCGAGGACTGAAAATGGTGCCCAATCCCAAGAGATCAGAGCCCAAAAGGTGGCAACTGGATTGGGAAACAACTCTGCACCTTGTTCTATATTTTGTGTTACTAGGTTTGTGCGTGTTTTATTTGGAAGGTCTATTTGGGAGACTAATGATTGGTTATCATTAACCGTCTCCCAAATAACTGCCCACTCTGCCGCTTCGTTTCAATGAGAATGGCCAGTTCAAAATCCTTCAGGTTGCTGATATGCATTATGCAAACGGAGCAGTCACACGATGCGAAGATGTTTTACCTTCTGAGTTCCCTTCTTGTTCAGATCTCAACACTTCTGCATTTCTCACTAGGATGATCCAGTCCGAGAAGCCGGATTTCATTGTATTTACAGGAGACAACATCTATGGACCGGATTCCGCTGACGCTGCCGATTCTATGGATGCTGCATTTGCTCCTGCAATAAAATCCAAGCTTCCTTGGGCAGCAGTATTGGGTAATCATGACCAAGAATCTACCATGACCCGTGAAGAGCTGATGCTGTATTTATCTGTCATGGATTACTCCATTTCCAAGGTCAATCCTCTTTCTGATAATCCAAGTGACAGGCAGAGATTTACAGTTGATGGTTTTGGAAATTATAATATAGAAGTTAAAGGTGCTTTGGGTTCAGAGCTAGAGAACAAGAGTGTTTTCAATCTTTATTTTCTGGATAGCGGTGATAAGTCGACTGTTCCTGGAATTTCTGGCTATGGGTGGATCAAAGAAAGCCAGCAGGCTTGGCTCCGAGATGTTTCTGCACTATTACAGGATACATATAAAAGGGGACGGGCTCCACAGACTGATCCAGCTCCAGCTCTTGGCTTTTTCCATATTCCTCTGTATGAGGTACGGTACCTTGGAGGTTCAGAAATTGTGGGTGAAATGCAGGAAGGAGTGGGTTGTGCTTCCATAAACTCAGGTGTCTTGAGCACTTTTGTAAGTACTGGGGACATCAAGGCAGTCTTCACAGGTCACGACCATGTCAATGATTTTTGTGGGAAATATGAGGGAATTTGGCTGTGTTATGGGGGTGGATTTGGCTACCATGCTTATGGAAAAGCAGGATGGTCAAGACGAGCCAGAGTGATTATGGCTACTCTTGAAAAAGGTGAAAAAACATGGCAAGGTGTTACAAGTATAAAAACTTGGAAACGCTTAGATGATACAACATTTACTAAAATTGATGAACAGACACTATGGAGCAAATAG___TTGAAGGTAGGTCTGTTAAAGCTCAGTTCAAGCTCTGCAGTGGTGTGTCACTGGTCCGTTAATCTTTTGGGCAGTCACAAAAGTTCAGAACCCAGAATGACTTATTTTTCATGTTTAGGTTGGCAGTTTTGTTCTTAAGAAATCCAAGTGATATGTTCTTAAGAGGACTATACCTTCAACACAGATGCAAACAGGGACAGAGAGGCATGAATGAACTGCCCGGAATTCATATGACCTCTACCATTTCTGTACATTATATAACACCCTATCAATCTGCTAAAGGCTCTGTTCTGGACACCAGTGGGTGTGAAATATTATCGTGGATGCTAATATATGTATTTTAATTTAATCGGTGAAGCTGTTATCTCCAAAAAGTTATGATTATGAATATTATGTCTGTAAGATGGTTTTTTATTAGCTTTAAGTTATGATCATCGCTGCTTTTACAT

Fln Alignment:

Contig4077___GQFKILQVADMHYANGAVTRCEDVLPSEFPSCSDLNTSAFLTRMIQSEKPDFIVFTGDNIYGXXXXXXXXXXXXXXXXAIKSKLPWAAVLGNHDQESTMTREELMLYLSVMDYSISKVNPLSDNPSDRQRFTVDGFGNYNIEVKGALGSELENKSVFNLYFLDSGDKSTVPGISGYGWIKESQQAWLRDVSALLQDTYKRGRAPQTDPAPALGFFHIPLYEVRYLGGSEIVGEMQEGVGCASINSGVLSTFVSTGDIKAVFTGHDHVNDFCGKYEGIWLCYGGGFGYHAYGKAGWSRRARVIMATLEKGEK-TWQGVTSIKTWKRLDDTTFTKIDEQT
A9NXQ3______________GKFKILQVADMHYADGQSTKCEDVLPSQFSTCSDLNTTDFVKRMIKAEKPDFIVFTGDNIYGVDAKDAATSLKAAFEPAISAKLPWAAVLGNHDQESTLTRKQVMKHIVPMEYTLSKVNPHGKK--------IDGFGNYNLEVKGMKGSKLEGKSVLNLYFLDSGDYSTDPNITGYDWIKASQQAWFKETSAKLQKNYKSNPSAQSESAPGLVYFHIPLPEVKIFGSSSIIGVKQEPISCPLYNSGFLETMVQAEDVKAAFTGHDHKNDFCGKLRGIELCYAGGFGYHAYGKAGWSRRSRVVVASLEKDIKGGWKGVQSITTWKRLDDEHLSKIDTQT

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1222	15		84		0.999986
1346		13		86	0.999973
1385	77		11		0.968132
1511	66			33	0.997452
1532	83			16	0.994512
1533	83		16		0.994512
1534		83	16		0.994512
1535		83		16	0.994512
1536	83			16	0.994512
1623		83		16	0.994512
1663	33			66	1.0
1835	14	85			0.993533
1841		33	66		0.997452
1842		33	66		0.997452
1843		33		66	0.997452
1844	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain