SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4036

Length: 2174 nt

UniGene Fasta

>sp_v3.0_unigene4036
CCAATGCTCAAGCAGCGGAACCAACGAAGACTGCGCAATATTGATCCTCCCATTATATACATATTTTTTCCCCACAAGCTTCTGTGAGAGCCACTCTGTTATACATACGAACAATACAGAACACGGCTAAGATAATTTGAGCAGAGTACGAAGGTGTAGCATAACTTCAGAGGTATAGCATAACTTCCAAGGATCAGCCATGGTACAATCCACAAGTTTCTACAATATTAATTCCCACTTGCCTTCCCCTTTGTTCTCCTCCACACGGCGGACATTGCCTCGTCCATTGCCGTCTGTTTCCAACTTTCTCAATTATCGTGCTCTGCCTCTTTCAATTCCTCGGTCGTTTGTACTTAGGCAGCTTGCCAACAGTAGAACTTATGGCGGTGTGGGAACAATAAGGGCCATGGCTGGATCCTCTGGATCACAGATAGAAGAATCTATCCAGACCCAAATCAGTGAGAATCCCATTGTCGTCTACTCCAAGACCTGGTGTCCGTACTGCCAGCAGACGAAAAGCTTATTCGAGGACCTTGGCGTGAAACCTTATGTTGTTGAACTTGATGAACTAGGTGGTACAGAGAGGCATGTACAGAATGCACTGCAAGGACTAACTGGACAGTCAACAGTACCGAATGTATTCATTGGTGGAAAACACATTGGTGGTTGCAGTGATACAATGGAATTGCATCAAAATGGAGAACTCATTCCATTGCTATCAGCAGCTGGGGTCAAAGTTGTGTAATGCTTGGATAAGATAAATATGAGATCCTGGTTGCACGTCAAAATATATGTGAACTTAGGTTTCCCTTTTATAAAGAAGTGTGATTGACGAAGCTGAGGTAGTTAAAAGTGATTTTAACTGAGTTATATGCATGCTTTGTTTGTTTCAAGAAAGAATCCAGAAATGCACTTCTTTTCTGATGCTTTTCTATGAATTATGATTCTTGTCATGCATTCTTATGTACTTTTGTCACCACTATATTACAGATATTTAAATTATGACTTGAAAGTGCACTGCAAGGGAGACTAGTCTGCGTTACAGGAGCCTCGGGATTCATCGCGTCGTGGTTGGTGAAGTTGCTGCTGGATCGCGGTTATGTAGTTCGAGCTACCGTTCGTGATTTAGGTAATCCTGAGAAGACAAAGCACTTACATGTATTGGAAGGAGCAAAGGAAAGGCTTCAACTGGTGAAAGCAAATTTACTTGAGGAGGGAACATTTGATGCAGCTGTGGATGGCTGTGAAGGTGTCTTTCATACTGCATCACCATTTTACACTAGCGTCAAAGATCCCCAGGCTGAATTGCTTGATCCAGCAGTCAAGGGGACTATTAATGTTCTTAATGCATGTGCCAAAGCTTCTTCTGTGAAGAGGGTGATAGTGACCTCCTCTGTAGCAGCTGTTATATTCAATTCTAGGCCTCGATCACCTGGAGTAGTTGATGAAAGTTGGTTCAGTGATGCAGAGTACTGCAAGCAAACTAAGGCCTGGTATCAGCTATCAAAGACATTGGCAGAAGAAACTGCATGGAAATTTGCAAAGGAGAAGGGTATCGATGTTGTCACGATAAATCCAGCGATGGTGATTGGCACACTTTTACAGCCTACTCTGAATACAAGCTGTGCTGCAATTCTACAACTAATGAATGGGTCTTCAACATATCCTAATGCGACGTTTGGATGGGTCAGTGTAAAGGATGTAGCAAAGGCACATATTCTAGCATTTGAAGTTCCATCGGCAAATGGAAGATATCTTTTGGTTGAGAGGATTGCCCACTTCTCAGAAATTGTGAAGATCCTGAGCAAACTATATCCAGGATGCGCACTTCCAACAAAGTGTGCAGATGATAATCCCTTTGTCCCTACCTATACTGTCTCAAAAGAAAAGATAGAGAAGTTGGGTCTAAACTACACTCCTATTGAAGAGGCTCTCAGAGATACCGTTGAAAGCTTGAAGGAAAAGAAGCTGCTCAACTTAGATAGCAATCTGTGATTTGCTTAAACCTGGAATCCTTTTTTCTTTTAAATATGTGGTTATGCTACTTAGCTTTTATTTAAAATTCTGTTGAAAATTAGATTCATCTTCTATCAAACACGGAAATGTCCTTGAAAGTCAGACATGTTCTTTACCTATTTTATTTTTGGATCATTTTTGAAAACATTTAGGATGAA

Ace file of the UniGene sp_v3.0_unigene4036

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cinnamyl alcohol dehydrogenase n=4 Tax=Rosaceae RepID=Q2Z1Z0_PRUMU	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein chr5:6556493-6558123 FORWARD LENGTH=326	69%
RefSeq	Arabidopsis thaliana	NP_197445.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002314079.1	cinnamoyl CoA reductase-like protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPJ3

Fln msg: W1: There is no M at the beginning,

Fln protein: LESALQGRLVCVTGASGFIASWLVKLLLDRGYVVRATVRDLGNPEKTKHLHVLEGAKERLQLVKANLLEEGTFDAAVDGCEGVFHTASPFYTSVKDPQAELLDPAVKGTINVLNACAKASSVKRVIVTSSVAAVIFNSRPRSPGVVDESWFSDAEYCKQTKAWYQLSKTLAEETAWKFAKEKGIDVVTINPAMVIGTLLQPTLNTSCAAILQLMNGSSTYPNATFGWVSVKDVAKAHILAFEVPSANGRYLLVERIAHFSEIVKILSKLYPGCALPTKCADDNPFVPTYTVSKEKIEKLGLNYTPIEEALRDTVESLKEKKLLNLDSNL*

Protein Length: 331

Fln nts: CCAATGCTCAAGCAGCGGAACCAACGAAGACTGCGCAATATTGATCCTCCCATTATATACATATTTTTTCCCCACAAGCTTCTGTGAGAGCCACTCTGTTATACATACGAACAATACAGAACACGGCTAAGATAATTTGAGCAGAGTACGAAGGTGTAGCATAACTTCAGAGGTATAGCATAACTTCCAAGGATCAGCCATGGTACAATCCACAAGTTTCTACAATATTAATTCCCACTTGCCTTCCCCTTTGTTCTCCTCCACACGGCGGACATTGCCTCGTCCATTGCCGTCTGTTTCCAACTTTCTCAATTATCGTGCTCTGCCTCTTTCAATTCCTCGGTCGTTTGTACTTAGGCAGCTTGCCAACAGTAGAACTTATGGCGGTGTGGGAACAATAAGGGCCATGGCTGGATCCTCTGGATCACAGATAGAAGAATCTATCCAGACCCAAATCAGTGAGAATCCCATTGTCGTCTACTCCAAGACCTGGTGTCCGTACTGCCAGCAGACGAAAAGCTTATTCGAGGACCTTGGCGTGAAACCTTATGTTGTTGAACTTGATGAACTAGGTGGTACAGAGAGGCATGTACAGAATGCACTGCAAGGACTAACTGGACAGTCAACAGTACCGAATGTATTCATTGGTGGAAAACACATTGGTGGTTGCAGTGATACAATGGAATTGCATCAAAATGGAGAACTCATTCCATTGCTATCAGCAGCTGGGGTCAAAGTTGTGTAATGCTTGGATAAGATAAATATGAGATCCTGGTTGCACGTCAAAATATATGTGAACTTAGGTTTCCCTTTTATAAAGAAGTGTGATTGACGAAGCTGAGGTAGTTAAAAGTGATTTTAACTGAGTTATATGCATGCTTTGTTTGTTTCAAGAAAGAATCCAGAAATGCACTTCTTTTCTGATGCTTTTCTATGAATTATGATTCTTGTCATGCATTCTTATGTACTTTTGTCACCACTATATTACAGATATTTAAATT_-_ATGACTTGAAAGTGCACTGCAAGGGAGACTAGTCTGCGTTACAGGAGCCTCGGGATTCATCGCGTCGTGGTTGGTGAAGTTGCTGCTGGATCGCGGTTATGTAGTTCGAGCTACCGTTCGTGATTTAGGTAATCCTGAGAAGACAAAGCACTTACATGTATTGGAAGGAGCAAAGGAAAGGCTTCAACTGGTGAAAGCAAATTTACTTGAGGAGGGAACATTTGATGCAGCTGTGGATGGCTGTGAAGGTGTCTTTCATACTGCATCACCATTTTACACTAGCGTCAAAGATCCCCAGGCTGAATTGCTTGATCCAGCAGTCAAGGGGACTATTAATGTTCTTAATGCATGTGCCAAAGCTTCTTCTGTGAAGAGGGTGATAGTGACCTCCTCTGTAGCAGCTGTTATATTCAATTCTAGGCCTCGATCACCTGGAGTAGTTGATGAAAGTTGGTTCAGTGATGCAGAGTACTGCAAGCAAACTAAGGCCTGGTATCAGCTATCAAAGACATTGGCAGAAGAAACTGCATGGAAATTTGCAAAGGAGAAGGGTATCGATGTTGTCACGATAAATCCAGCGATGGTGATTGGCACACTTTTACAGCCTACTCTGAATACAAGCTGTGCTGCAATTCTACAACTAATGAATGGGTCTTCAACATATCCTAATGCGACGTTTGGATGGGTCAGTGTAAAGGATGTAGCAAAGGCACATATTCTAGCATTTGAAGTTCCATCGGCAAATGGAAGATATCTTTTGGTTGAGAGGATTGCCCACTTCTCAGAAATTGTGAAGATCCTGAGCAAACTATATCCAGGATGCGCACTTCCAACAAAGTGTGCAGATGATAATCCCTTTGTCCCTACCTATACTGTCTCAAAAGAAAAGATAGAGAAGTTGGGTCTAAACTACACTCCTATTGAAGAGGCTCTCAGAGATACCGTTGAAAGCTTGAAGGAAAAGAAGCTGCTCAACTTAGATAGCAATCTGTGATTTGCTTAAACCTGGAATCCTTTTTTCTTTTAAATATGTGGTTATGCTACTTAGCTTTTATTTAAAATTCTGTTGAAAATTAGATTCATCTTCTATCAAACACGGAAATGTCCTTGAAAGTCAGACATGTTCTTTACCTATTTTATTTTTGGATCATTTTTGAAAACATTTAGGATGAA

Fln Alignment:

Contig4036___LQGRLVCVTGASGFIASWLVKLLLDRGYVVRATVRDLGNPEKTKHLHVLEGAKERLQLVKANLLEEGTFDAAVDGCEGVFHTASPFYTSVKDPQAELLDPAVKGTINVLNACAKASSVKRVIVTSSVAAVIFNSRPRSPGVVDESWFSDAEYCKQTKAWYQLSKTLAEETAWKFAKEKGIDVVTINPAMVIGTLLQPTLNTSCAAILQLMNGSSTYPNATFGWVSVKDVAKAHILAFEVPSANGRYLLVERIAHFSEIVKILSKLYPGCALPTKCADDNPFVPTYTVSKEKIEKLGLNYTPIEEALRDTVESLKEKKLLNLDSNL
A9NPJ3______________MSGRLVCVTGASGFIASWLVKLLLDRGYVVRATVRDLGNPEKTKHLHALEGANERLQLVKANLLDEGTFDAAVDGCEGVFHTASPFYIGIKDPQAEMLDPAVKGTINVLNACAKASSVKRVVVTSSVASVIFNSRPRSPGVVDETWFSDAEYCKQTKAWYQLSKTLAEETAWKFAKEKGIDIVTINPAMVIGTLLQPSLNTSCAAILQLMNGSSTYPNMTFGWVSVKDVAEAHILAFEVPSANGRYLLVEKVAHCSEIVKILSKLYPGCTLPTKCADDNPFVPTYTVSKERIEKLGLKYTPIEEALRDTVESLKEKKLLNLDSNV

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
106		33		66	0.997452
151	66	33			0.997452
152	66		33		0.997452
222	33	66			0.997452
266		66	33		0.997452
477		11		88	0.923564
703	88		11		0.999952
982	10		90		0.90298
983	90			10	0.90298
1041		11		88	0.923564
1481	90		10		0.90298
1482	90			10	0.90298
1483	90			10	0.90298
1484		90		10	0.90298
1485			10	90	0.90298
1486	88		11		0.923564
1490		88	11		0.923564
1491	11	88			0.923564
1492	14			85	0.993533
1493			85	14	0.993533
1498	16	83			0.994512
1501		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain