SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4030

Length: 1613 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4030

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor Pur-alpha 1 [Arabidopsis thaliana] gb\|AAL31888.1\|AF419556_1 At2g32080/F22D22.17 [Arabidopsis thaliana] gb\|AEC08632.1\| transcription factor Pur-alpha 1 [Arabidopsis thaliana]	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%

Source	Gene names
Sma3	At2g32080; F22D22.17; GSVIVT00024862001; Os01g0260700; OsI_01264; OsJ_01179; P0699D11.18; PHYPADRAFT_179503; PHYPADRAFT_70117; POPTRDRAFT_177738; POPTRDRAFT_647415; PURA1; RCOM_0341900; To4-12; VITISV_041199;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	PUR-alpha/beta/gamma, DNA/RNA-binding	IPR006628	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G32080.1	PUR ALPHA-1 purin-rich alpha 1 chr2:13642716-13644036 REVERSE LENGTH=296	61%
RefSeq	Arabidopsis thaliana	NP_850182.1	transcription factor Pur-alpha 1 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002304844.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADJ0

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 278 - 295

Fln protein: MEGYAANNDAELLSKTLQVEQKLFYFDLKENPRGQYLKISEKTSGSRSTIIVPIGGVAWFLDLFNYYVDGDDEEVLSKELQLDAKVFYFDVGVNKRGRFLKISEASTTYSRSTIIVPVGNTRKDGWAAFRNILGEINEASQQASGPSEHLGGLSDEVGAGFLSGGSGEAAFEADTTGDRAMALTPAEDTGEAVVSKVIRADQKRFFFDLGCNNRGQFLRISEVIGPDRSAIIVPVSALEQFHDVLGHFVDITRTQGLAAASGANVRTVAAAHRRNEN*

Protein Length: 279

Fln nts: GTTACTTAAGAATAAATTTCCTGCTGCGTTGAAAAGTTCGAGAATGACAATTGGTTCTCAGGAAATATACCCTTCTGTAAAAGATGAAAAGCAAGGCACTAGAGCGAAAAGGAGCTAATAAGACACCGCTCAATGGCAGGGGATACTGTGTGATGCATATAATTCAACGGACCATAAAATTACTGGACTCAGCGAGGTGGACTTCAATTACTTTTTCTCCTAAATTGTGAACCAACTTCAATTACTTTTTCTCTTAAATTGTGAATCCATTACAATGAGGGTATGCAGGTGAAAGGAATAGGAGTGGGATTCTTATTAAGCA_-_ATGGAAGGTTACGCTGCGAATAACGATGCAGAGCTTCTGAGCAAAACCCTTCAAGTGGAACAGAAGTTGTTCTATTTCGATCTCAAGGAAAACCCCCGTGGGCAATACCTTAAAATCTCTGAGAAGACCTCGGGCTCACGGTCTACAATAATTGTGCCCATTGGTGGAGTTGCATGGTTCCTCGATCTCTTTAATTATTATGTCGACGGAGATGACGAGGAAGTTTTGAGCAAGGAATTGCAGCTGGATGCCAAGGTATTTTATTTCGATGTTGGGGTGAATAAAAGGGGTCGGTTCTTGAAGATTTCTGAAGCATCTACAACCTACAGTCGCAGCACAATCATTGTACCTGTAGGAAACACAAGAAAAGATGGTTGGGCAGCATTTAGAAATATTTTAGGAGAGATAAATGAAGCTTCCCAACAAGCTTCTGGCCCATCCGAACATTTGGGAGGGCTTTCCGATGAAGTTGGCGCTGGTTTCCTATCAGGTGGAAGTGGAGAAGCAGCATTTGAGGCAGACACAACAGGTGACAGAGCCATGGCGTTAACTCCAGCAGAAGATACGGGTGAAGCAGTTGTTTCAAAAGTGATTCGAGCTGATCAGAAACGTTTCTTTTTTGATCTTGGGTGTAACAACCGAGGCCAGTTTCTTAGAATTTCTGAGGTGATAGGTCCTGACCGTTCAGCTATTATTGTTCCTGTATCTGCTTTGGAGCAGTTTCACGATGTGCTAGGCCATTTTGTTGACATCACCAGAACTCAGGGTCTTGCAGCTGCAAGTGGTGCAAATGTGCGCACAGTAGCAGCTGCACACAGACGAAATGAAAACTAGATTACCTGCATATAAACCGAAACATGATTCGATTGGACTGATCATAGGGAGCATTGGAAATGGTCAATGACACTTCACAAGTTTATGACTGTCATTTGCAGCCATTTCATCATGCAAATAATCTTCTTTGTTGCCATCACATTATGTGAGTATAACCTGTGTGTTGAAGTGCTACTGAAGCACATGACCATTATAACCTTTGCTATTGGTGGATTTTTGAAGGAAAGGCACCAATGAAACTTAATGGGTTATTTGAGGTTTACATATATGGTTGGCGGATCTATATCACTTAAGGAGAGCTTTTATGCAACAGCATTTTTGTTTCTATCAGAAGGCTGCTTTAATCCAGAAGCCATTAAACAATTTCAAAATGAAATAAATTTGTCTTAAATTTCTAACTGGGAGTAATCGAATCATGTTTCATTATTTTATCAGAAAGCATTGCTTTAAAAAGTGC

Fln Alignment:

Contig4030___AANNDAELLSKTLQVEQKLFYFDLKENPRGQYLKISEKTSGSRSTIIVPIGGVAWFLDLFNYYVDGDDEEVLSKELQLDAKVFYFDVGVNKRGRFLKISEASTTYSRSTIIVPVGNTRKDGWAAFRNILGEINEAS------QQASGPSEHLGGLSDEVGAGFLSGGSGEAAFEADTTGDRAMALTPAEDTGEAVVSKVIRADQKRFFFDLGCNNRGQFLRISEVIGPDRSAIIVPVSALEQFHDVLGHFVDITRTQGLAAASGANVRTVAAAHRRNEN
D5ADJ0______________SGGSDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSGSRSTIIVPLAGVVWFVDLFNYYASGNEQDLYSKELQLDTKVFYFDVGENQRGRFLKVSEASVTRNRSTIIVPAGNAKEDGWSAFRDILVEINEASQLLLPPQQPSGPSEHLRALSDAVGPGFISGESVQTTSLNGTMGDRAMGLATG-DAGGVVMAKVIRAEQKRFFFDLGSNSRGQFLRISEVTGADRSVIILPVSVLEQFHDALGQFVDITRSQGHAGASLPNVRTVASANRRSEN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
454		23	76		1.0
511		45		54	1.0
1167	4			78	1.0
1552		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain