SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3368

Length: 1546 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3368

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Single bromodomain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T0X0_PHYPA	-	-	1.0e-31	46%
FL-Next	sp=Transcription factor GTE9; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	27%

Source	Gene names
Sma3	BRD1504; BRD908; PHYPADRAFT_167500; POPTRDRAFT_804600;

Source	GOs	Term	Type	e value	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3		IPR014778	-	-
Sma3	Myb-like domain	IPR017877	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G60110.1	DNA-binding bromodomain-containing protein chr3:22197993-22201159 FORWARD LENGTH=641	5.0e-20	46%
RefSeq	Arabidopsis thaliana	NP_567092.4	DNA-binding bromodomain-containing protein [Arabidopsis thaliana]	6.0e-20	46%
RefSeq	Populus trichocarpa	XP_002313471.1	bromodomain protein [Populus trichocarpa]	6.0e-22	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93YS6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 79 aas, your sequence is shorter than subject: 192 - 688

Fln protein: KECDEFMDAWNHTRSSGDSHMEDRMEGTDEIETSPMSRRSRREPKVPGKLLPLLECLRAITSHKFGSLFKHKLESQNKQQYRNIIRRHMDLGMIRARLEEGSYSGSQEFFRDLLLVFNNALIFYPKSSQEHRAAVVLRELANNEMAKIFETEALLKQEGPSTRKRDPRAIPGPQANATKFNPSSRKRNARP*

Protein Length: 193

Fln nts: CAAAGAATGTGATGAATTCATGGATGCCTGGAATCATACAAGGTCTTCTGGAGATAGCCATATGGAGGATAGAATGGAAGGCACAGATGAGATTGAAACTTCCCCAATGAGCAGACGAAGCAGAAGGGAACCCAAAGTTCCGGGCAAATTGCTGCCTCTTCTGGAATGCTTAAGGGCCATCACTTCTCACAAATTTGGATCCCTCTTCAAGCATAAACTTGAGAGCCAGAATAAGCAGCAATACAGGAACATTATCAGGCGACACATGGATTTGGGAATGATAAGGGCAAGATTGGAGGAAGGGTCTTACTCTGGTAGCCAGGAGTTTTTCCGAGATTTGCTTCTGGTTTTCAACAATGCTCTTATATTCTACCCCAAGTCCTCTCAGGAGCACAGAGCTGCGGTGGTGCTTAGAGAATTGGCAAACAATGAGATGGCGAAGATATTCGAGACAGAAGCTTTGCTAAAACAGGAAGGCCCATCCACAAGAAAAAGGGACCCCAGGGCCATTCCGGGGCCCCAAGCCAATGCCACCAAGTTCAATCCTAGCAGCAGAAAGAGAAACGCAAGGCCATAATGTAGTTGGGGCAAGAGCTGCACCGAGATCCAAAACCACCAGCAGATTGAACGTTAAGGAAGAACAATACAACGCCCAGGAGCCACCCAAGGAAGCAATTGAAGTATCATCCTCTGCAGGTCTAAAACCTGAGAATGAACCAGAAGACAAATTTGAAGCTGAAGCACCAAATAGATCAAAGATGCCCAAGGCTGGAGATGAAAGAAAAACCTCTGGAATCAGCATTCAACCTAAGAAAGGCTCTGGTTTTCATAACGATCCCAAGAAGAACTCCAACACCGGGCCCAAAAAGACCACGGTCGGCAACACCCCACTGGTTGAGTCGCGGAACAATTCTCATACCCACAAGAGCAACAGTCACAGCCACCACCACAACAACAATGGCCGCAGCACAGAACAGCTTTTAGGCAAAGTTGCAGCGATGAAGGAAGAGAAGGGCACTCCTCCTCCTGAGCCCACCCACAAGCAACGAACATCAGATCAGGACCAGCCCTCTCCCTTGAAAAGAGGAGTTGGAAGGCCACCTAAGCATGTCAAAAGAGCATCAGGAGCAGATGATGAGCTACCATCAAAGGCCACAGGGGATCCAGAAGCAGCTTCAAGGGCGAGAAAAAGACTCAGAAAATGAGAGCAACTTCCTGTTTTTGGACATGGATTCGGATTCTGCTCAGACCACCCCAGCTGGACTATTATGTAAATACAGAGAATTTTTGTTTAGTCGAACAGATGGAGATGAAATTCCATGCAGGTAAATTATCTATATATATGCATATATTCTAGGGAAAAAGCTTCCATCTTGTCTGTAAAAATTGTATCCAGTGCGTTTCTGTTGATTGTTCAGCGATTGAATGCTTCCAATTGAGGCAACAATCCCCAAACTGGGCTCTAGATTAGGTTCCTCCCCTGCCTGAACAAAACAAATTCTGGTAGGAGTTATTATTCATATTTTTCCCCTTTCTGAGTGGAAAC

Fln Alignment:

Contig3368___SPMSRRSRREPKVPGKLLPLLEC---LRAITSHKFGSLFKHKLE--SQNKQQYRNIIRRHMDLGMIRARLEEGSYSGSQEFFRDLLLVFNNALIFYPKSSQEHRAAVVLRELANNEM----AKIFETEALLKQEGPSTRKRDPRAIPGPQANATK
Q93YS6______________NPISAASKPTPVTTAVMLLMKQCEALLKRLMSHQYGWVFNTPVDVVKLNILDYFNVIEHPMDLGTVKNKLTSGTYSCPSEFAADVRLTFSNAMTYNPPGNDVYVMADTLRKFFEVRWKTLEKKLSGTKVHTEPSNLDAHKEKHIVIPVPMAKKRK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1084	83	16			0.994512
1086	90	10			0.90298
1090		10	90		0.90298
1096	90	10			0.90298
1097			90	10	0.90298
1099		90		10	0.90298
1142		41	8	50	1.0
1293			90	10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain