SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3343

Length: 1310 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3343 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hyothetical protein n=1 Tax=Toxoplasma gondii RepID=Q1JTH9_TOXGO	-	-	3.0e-07	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNU9

Fln msg: Separated hits, possible frame ERROR between 697 and 1095, Distance to subject end: 367 aas, your sequence is shorter than subject: 282 - 634

Fln protein: MDREGSTLLRKMKTLFLFLALAQFFFIPTSFSSPASKRYSIGLAKTPLPSVSFSQGSSASKPNAIAAATSPNASGSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAPPADKGGQSESPSPLPLKPKHKSPPAPPADESPAPSPSESSESPISSSGTALDPKQLAALKSLGVSTVKDP

Protein Length: 283

Fln nts: GCGCTTATTCTCCTCGACTTCACATTGTGTGTGCCAAATTGGGAGTATCCGTAAGGAATATGTAAAAGGAGGTCACAGGAATCTGATGCTCAGAGATCCAACTTGGGTTTGCGAACAAAGCAATTCTTCTGTCTACCGCGTATCCTCGTCAGTATGTGAGAAAGCTCTGTGAAGGAGAGCTAAGCTGGGACATTAGTCTTGTAGCCTCGTCCGTAATGTAACTGTTCGGGCAGACTCAGACTCTCAGGGAATCATTCTACTGAACTGAGCAAGGTATGTAGCCTTCATTCCTTTCTTCCTTTAAGCTAGGAAGAACTGATGAACGCAGATGCAGCATATCAACTATGAGACAAGCAAGGAGCCCGTGAAACTGAGACTTTGAAACTCTCTCGGGCATTTATTGATAGCTAGATTTAGAAACTCATTTCACTCCGAGATCTCAGCATTCTGAAGTGGGTTTGGAACT_-_ATGGATAGAGAAGGAAGTACCCTTTTGAGAAAAATGAAGACCCTTTTCTTATTTCTGGCACTTGCTCAGTTCTTTTTCATACCCACTTCATTTAGTTCACCGGCTTCAAAGAGGTATTCCATCGGTCTAGCCAAAACTCCATTGCCTTCAGTGTCTTTTTCACAAGGATCCAGTGCTTCGAAACCAAATGCCATTGCAGCTGCAACATCTCCGAATGCCTCAGGTTCTGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGCCCCTCCTGCAGATAAAGGAGGTCAATCTGAATCCCCATCTCCATTGCCACTCAAACCTAAGCATAAGTCTCCCCCTGCCCCTCCTGCAGATGAAAGTCCAGCTCCATCTCCTTCCGAATCATCGGAATCGCCGATATCATCTTCTGGCACTGCTTTGGATCCCAAACAGTTAGCTGCATTGAAATCGTTAGGTGTCTCCACTGTGAAGGATCCG

Fln Alignment:

Contig3343___MDREGSTLLRKMKTXXXXXXXXXXXFIPTSFSSPASKRYSIGLAKTPLPSVSFSQGSSASKPNAIAAATSPNASGSVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAPPADKGGQSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGTALDPKQLAALKSLGVSTVKDP
B8LNU9______________MDREGITLLREMKTLFLFLAFAQIFVIPTSLSSPASRSSPISLAKAPLPSMAFAQGSSASKPNAIAAATSPKASDAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAPPADTGGPSESPSPSPLKSKHKSPPAPPADESPAPSPSESSQSPTSSSGTALDPKQLAALKSLGVSTVKDP

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
612	20		80		0.995493
978		90		10	0.90298
991	11	88			0.923564
1004			11	88	0.923564
1009			11	88	0.923564
1011	88	11			0.923564
1014		11	88		0.923564
1091			33	66	1.0
1104		33	66		1.0
1270		50		50	1.0
1288		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain