SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3267

Length: 620 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3267 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tetraspanin family protein [Arabidopsis thaliana] emb\|CAA22975.1\| putative protein [Arabidopsis thaliana] emb\|CAB81465.1\| putative protein [Arabidopsis thaliana] gb\|AAM63131.1\| unknown [Arabidopsis thaliana] gb\|AAO64917.1\| At4g28770 [Arabidopsis thaliana]	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Gene names
Sma3	AT4g28770; At2g20230; At2g20230/F11A3.22; At2g20740; At4g28770; F16A16.120; GSVIVT00028446001; POPTRDRAFT_265173; POPTRDRAFT_830605; RCOM_1175450; RCOM_1723190;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Tetraspanin	IPR018499	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G28770.2	Tetraspanin family protein chr4:14212177-14213896 REVERSE LENGTH=325	0.0	45%
RefSeq	Arabidopsis thaliana	NP_194606.1	Tetraspanin family protein [Arabidopsis thaliana]	0.0	45%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	G %	T %	Probability
246	80		20	0.995493
351	85	14		0.993533
352	14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain