SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3041

Length: 2032 nt

UniGene Fasta

>sp_v3.0_unigene3041
TCAACAGAGCAGACAATGAACAACCCATAACCCAAAAATTGGAAGGAAGGAAATCCCAACTAAATTTGAGAGGGAAAACAGAGTAGGCATCTTTAAGGTGATTGTGAAGGAGGGCATTTAGGACACAGAGTGGCTGGTACAGTACTGGAGGCCAGGGCAGGAGATGACCAGTTTAAAATTAAAATTTGATTGAATAGGTCAAGGTTTGATAAATAAATACTGGAGAGATTTCAGTGAGGAGGAAGCTTAAAGGACAGAGCAGAGGAAAGGACAGGGGCAATACATATTTTCTAGCAGAGGAAGAACCGCCAAAGCTGAGGACAATTTTACCCGAATTTTTTGATTTGCAGACTCAATCTCCTCCTTTGATCTTCGAAAACAATAGAGGGATTGTCTCGTATGGAAGAGATGCCCACTAGTGTGAATAACATGGTTTTGAATGTTATTGATCTGAGCAGTGATGATGAGGATACACCACAGGAAAGAAATCCTCCAGAGAAACAAATAAACTTGTCCACAGGAGTAGTTTTGAAAAATGAGCCACAATTGGAACAGTTTATGGGTAGACAGGCATCACAAAGTCAAGAACTTCCGCAATCAACTAGTCATAGTTTTGACTGGTATCTGCAAGAGGCCAAACCTGACTTGCAGCAAGATAATAAACCTGACATTCAGCATATAATCCAAAGTGATGTGCTGCCTCTTGCTCAAGATAAAACACAATATCAAAGGCAATTGGAACAGGATAGATTGAGACAAGCTAATGGGTTTGTGCGTCCATCTCTTCCTTCATTATCTCAACAAGAAAGGGTATCTACACACCAAAATATTTCTGCAAGAGAAGATGTTAGGTCCAGCCAAGCAGTGCAAGAGAATGATCGGATAATGAATAGGCTGGGAGAACAGCAATTGTTAAGATCTTCTTTAAGGCCCAGTTCGTCAGGCCAATTGATACAGCAAATCCAGAATAATACTGATATTCTTAGAACAAGTCAGGCATTGATAGCAAATGATCAAACCACAGGCATACGTCCAGTCATCTCTTCAATGCCAAATCAATCTGGATTTCTTGCCCGAGAAAATCACCAGTTTTGGAGAGCAGGCGATTATGATGTTCAACCTACACAAAAAAGAACTATAACAGGTGGAATGGACCATGTTCGTGTACACCCTAAATTTCTTCATTCTAATGCAACCTCCCACAAATGGGCATTTGGAGCGATTGCAGAGCTTCTTGATAATGCAGTTGATGAGATCCAAAATGGTGCAACTTATGTTAAAGCAGATCAAATTTTTAACCCACGAGATTACAGCCATGCTTTACTTTTTCAGGATGATGGAGGGGGTATGGATCCTGAATGCATCCGGCGGTGCATGAGCTTGGGATACTCCATGAAGAACACAAATACTACCATTGGACAATATGGTAATGGTTTCAAAACAAGCACGATGAGGCTAGGAGCAGATGCTATTGTTTTCACCCGAAGTTCTTCTGGCAGCTCGTCAACACAGAGTATTGGGCTCCTTTCCTATACGTTCTTGAGGAAAACTGGGCAGGATGACATCATTGTTCCAATGGTCGATTTTGAGCTTCCATCAGATCATGAAGGACCTAGAATGTTAGTTCGCAGCACAGAAAGTACTTGGACAAAAAACTTGGCCACAATATTGCAGTGGTCTCCCTATGCATCGGAAACTGAGCTTATGAAGCAGTTCGATGACATTGGCCCTCATGGTGTAAAAATTATTGTTTACAACCTTTGGCTTAATGATGATGGCATCCTGGAGCTTGATTTTGACACAGATAAGGAGGATATAAGATTGCGAGGTGGACTGAAGTCAGGAACAAAACAAGCTACTGAATTGATTCAGTCACATATTTCTTACCGTCATTTATATTCATTACGTGCCTATGCATCTATTCTTTATCTGAGGAAGATGCCAAATTTTCAAATCATTCTAAGGGGAAAGCCGGTTGAATATCATAGTTTAGCTGATGATCTAAAATTTTCCAAAGTAATAATCTACAAGC

Ace file of the UniGene sp_v3.0_unigene3041

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana] gb\|AAW70385.1\| At4g36280 [Arabidopsis thaliana] gb\|AEE86643.1\| histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana]	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	62%
Sma3	Zinc finger protein, putative	-	-	9.227e-09	-

Source	Gene names
Sma3	AT4g24970; AT4g36270; AT4g36280; AT4g36290; At1g19100; At4g36280; At4g36290; At5g13130; At5g50780; C7A10.1020; F13M23.110; F23E13.160; F23E13.170; F23E13.180; GSVIVT00016039001; GSVIVT00017982001; GSVIVT00020694001; GSVIVT00036855001; LOC_Os10g10190; LOC_

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G36280.1	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein chr4:17165513-17169277 REVERSE LENGTH=626	56%
RefSeq	Arabidopsis thaliana	NP_195351.2	histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002327779.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7SP48

Fln msg: Distance to subject end: 277 aas, your sequence is shorter than subject: 544 - 641

Fln protein: MEEMPTSVNNMVLNVIDLSSDDEDTPQERNPPEKQINLSTGVVLKNEPQLEQFMGRQASQSQELPQSTSHSFDWYLQEAKPDLQQDNKPDIQHIIQSDVLPLAQDKTQYQRQLEQDRLRQANGFVRPSLPSLSQQERVSTHQNISAREDVRSSQAVQENDRIMNRLGEQQLLRSSLRPSSSGQLIQQIQNNTDILRTSQALIANDQTTGIRPVISSMPNQSGFLARENHQFWRAGDYDVQPTQKRTITGGMDHVRVHPKFLHSNATSHKWAFGAIAELLDNAVDEIQNGATYVKADQIFNPRDYSHALLFQDDGGGMDPECIRRCMSLGYSMKNTNTTIGQYGNGFKTSTMRLGADAIVFTRSSSGSSSTQSIGLLSYTFLRKTGQDDIIVPMVDFELPSDHEGPRMLVRSTESTWTKNLATILQWSPYASETELMKQFDDIGPHGVKIIVYNLWLNDDGILELDFDTDKEDIRLRGGLKSGTKQATELIQSHISYRHLYSLRAYASILYLRKMPNFQIILRGKPVEYHSLADDLKFSKVIIYK

Protein Length: 545

Fln nts: TCAACAGAGCAGACAATGAACAACCCATAACCCAAAAATTGGAAGGAAGGAAATCCCAACTAAATTTGAGAGGGAAAACAGAGTAGGCATCTTTAAGGTGATTGTGAAGGAGGGCATTTAGGACACAGAGTGGCTGGTACAGTACTGGAGGCCAGGGCAGGAGATGACCAGTTTAAAATTAAAATTTGATTGAATAGGTCAAGGTTTGATAAATAAATACTGGAGAGATTTCAGTGAGGAGGAAGCTTAAAGGACAGAGCAGAGGAAAGGACAGGGGCAATACATATTTTCTAGCAGAGGAAGAACCGCCAAAGCTGAGGACAATTTTACCCGAATTTTTTGATTTGCAGACTCAATCTCCTCCTTTGATCTTCGAAAACAATAGAGGGATTGTCTCGT_-_ATGGAAGAGATGCCCACTAGTGTGAATAACATGGTTTTGAATGTTATTGATCTGAGCAGTGATGATGAGGATACACCACAGGAAAGAAATCCTCCAGAGAAACAAATAAACTTGTCCACAGGAGTAGTTTTGAAAAATGAGCCACAATTGGAACAGTTTATGGGTAGACAGGCATCACAAAGTCAAGAACTTCCGCAATCAACTAGTCATAGTTTTGACTGGTATCTGCAAGAGGCCAAACCTGACTTGCAGCAAGATAATAAACCTGACATTCAGCATATAATCCAAAGTGATGTGCTGCCTCTTGCTCAAGATAAAACACAATATCAAAGGCAATTGGAACAGGATAGATTGAGACAAGCTAATGGGTTTGTGCGTCCATCTCTTCCTTCATTATCTCAACAAGAAAGGGTATCTACACACCAAAATATTTCTGCAAGAGAAGATGTTAGGTCCAGCCAAGCAGTGCAAGAGAATGATCGGATAATGAATAGGCTGGGAGAACAGCAATTGTTAAGATCTTCTTTAAGGCCCAGTTCGTCAGGCCAATTGATACAGCAAATCCAGAATAATACTGATATTCTTAGAACAAGTCAGGCATTGATAGCAAATGATCAAACCACAGGCATACGTCCAGTCATCTCTTCAATGCCAAATCAATCTGGATTTCTTGCCCGAGAAAATCACCAGTTTTGGAGAGCAGGCGATTATGATGTTCAACCTACACAAAAAAGAACTATAACAGGTGGAATGGACCATGTTCGTGTACACCCTAAATTTCTTCATTCTAATGCAACCTCCCACAAATGGGCATTTGGAGCGATTGCAGAGCTTCTTGATAATGCAGTTGATGAGATCCAAAATGGTGCAACTTATGTTAAAGCAGATCAAATTTTTAACCCACGAGATTACAGCCATGCTTTACTTTTTCAGGATGATGGAGGGGGTATGGATCCTGAATGCATCCGGCGGTGCATGAGCTTGGGATACTCCATGAAGAACACAAATACTACCATTGGACAATATGGTAATGGTTTCAAAACAAGCACGATGAGGCTAGGAGCAGATGCTATTGTTTTCACCCGAAGTTCTTCTGGCAGCTCGTCAACACAGAGTATTGGGCTCCTTTCCTATACGTTCTTGAGGAAAACTGGGCAGGATGACATCATTGTTCCAATGGTCGATTTTGAGCTTCCATCAGATCATGAAGGACCTAGAATGTTAGTTCGCAGCACAGAAAGTACTTGGACAAAAAACTTGGCCACAATATTGCAGTGGTCTCCCTATGCATCGGAAACTGAGCTTATGAAGCAGTTCGATGACATTGGCCCTCATGGTGTAAAAATTATTGTTTACAACCTTTGGCTTAATGATGATGGCATCCTGGAGCTTGATTTTGACACAGATAAGGAGGATATAAGATTGCGAGGTGGACTGAAGTCAGGAACAAAACAAGCTACTGAATTGATTCAGTCACATATTTCTTACCGTCATTTATATTCATTACGTGCCTATGCATCTATTCTTTATCTGAGGAAGATGCCAAATTTTCAAATCATTCTAAGGGGAAAGCCGGTTGAATATCATAGTTTAGCTGATGATCTAAAATTTTCCAAAGTAATAATCTACAAGC

Fln Alignment:

Contig3041___QNNTDILRTSQALIANDQTTGIRPVISSMPNQSGFLARENHQFWRAGDYDVQPTQKRTITGGMDHVRVHPKFLHSNATSHKWAFGAIAELLDNAVDEIQNGATYVKADQIFNPRDYSHALLFQDDGGGMDPECIRRCMSLGYSMKNTNTTIGQYGNGFKTSTMRLGADAIVFTRXXXXXXXXXXXXXXXYTFLRKTGQDDIIVPMVDFELPSDHEGPRMLVRSTESTWTKNLATILQWSPYASETELMKQFDDIGPHGVKIIVYNLWLNDDGILELDFDTDKEDIRL-----RGGLKSGTKQATELIQSHISYRHLYSLRAYASILYLRKMPNFQIILRGKPVEYHSLADDLKFSKVIIYK
D7SP48______________EGGVGVERRSNQQVQTDQV-GQQTVVPLPPAEPPL----SRSFWKAGAYDNTPSKLTPAPDQLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEICNGATFVKLDRIDNRKDNSPALLFQDDGGGMDPESIRKCMSLGYSSKKSNTTIGQYGNGFKTSTMRLGADVIVFSRASRTSRATQSIGLLSYTFLRRTGQDDVIVPMVDFDI-SDH-WAEPIIYSSKEDWSTNLKTILEWSPFASKEELMQQFEDIGPHGTKIIIYNLWLNDEGIFELNFDDDDEDIRLRDEANRGSLSKVPKKVAEL-QSHISYCIRYSLRAYASILYLRKFTNFQIILRGKPVQQFNIADELKYPKVVIYR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1720		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain