SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1099

Length: 1624 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1099

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative truncated TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS7_PINMO	-	-	0.0	54%
FL-Next	tr=Putative truncated TIR-NBS-LRR protein; Pinus monticola (Western white pine) (Strobus monticola).	-	-	0.0	56%
Sma3	Putative TIR/NBS/LRR disease resistance protein	-	-	4.732e-09	-

Source	Gene names
Sma3	RGA;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: E9NZS7

Fln msg: Distance to subject end: 349 aas, your sequence is shorter than subject: 466 - 815

Fln protein: MDASGASSSSAADPINSSSHGVFINHRGPDTKKTFATHLYRRLFERGLKPFLDQEELKVGFNFPSQILGAIRSARVHVAIFSPTYAHSQWCLDELSLMLESGAPIIPIFFQVDPADLRWTDQKKKGVYAEALNELQMKTRDDPQTDEKKPRYDSATLQKWRKALSDVADISGFDLKGKFNGDEGLLLDAVVKRVVELMPPNTKLYVAKNPTGLDDKIEDFETTVLAQQHTGEVQVVGIVGSGGVGKTTLAKEFFNRKSSEYSKSYFLSDVRENARISLHSLQSKLLKGLFGDDRQIDNIHEGTETVRQFLSSSKIFLILDDIDHVNQVDALLPDINVLDKDSLILITSRDEGVLKRSGVKESSMYRLTGLPYQHSQKLFCSYAFCHPNPHPGFEDLVNKFLMACDGLPLSLIVFGSLVSGYDDRFDWEAILHRLQLPSDIKDRLKISYDALGNEEQQIFLDIACFF

Protein Length: 467

Fln nts: CATCTCCGCACTCCCAAATTTTCTCCCCTTACGATCCTCTCCACATTTTCTGGTAGGCTCTTGAATTTATTTCCACCCTCGCATTTGGCGTCTCAGTGGCTTCGGCTTTCAGAGTTTCCCACTTTCTATTTCTATTTCTATAACCATTTGGCATTCACATACCCAACGCCTCCATCCTCAGTTCCCAAAAACCACTCTGAGATTCAAATTGATTCCTGCAACTACG_-_ATGGACGCTTCTGGCGCCTCCTCTTCCTCTGCTGCTGATCCCATCAACAGTAGCAGCCACGGTGTGTTTATCAACCACCGTGGCCCCGACACCAAGAAGACCTTCGCTACTCATCTCTACCGTCGTCTCTTTGAACGTGGACTCAAACCCTTTTTAGACCAGGAGGAATTAAAAGTGGGATTCAATTTTCCTTCTCAAATACTCGGCGCTATCCGAAGTGCCCGGGTCCATGTCGCCATCTTTTCGCCCACTTATGCCCATTCCCAATGGTGTCTCGATGAACTCTCTCTCATGCTGGAGTCGGGGGCTCCGATTATTCCTATATTTTTCCAGGTCGACCCTGCTGACCTCAGGTGGACAGATCAGAAGAAAAAAGGAGTGTATGCTGAGGCCCTAAACGAACTCCAGATGAAGACAAGGGACGACCCTCAAACTGATGAAAAGAAGCCACGATATGACTCTGCCACTCTTCAAAAATGGAGAAAAGCTCTCTCTGATGTGGCAGATATAAGTGGCTTTGATTTAAAGGGCAAGTTTAACGGCGACGAGGGTCTGTTGCTAGATGCGGTCGTCAAACGTGTGGTGGAACTAATGCCCCCAAATACAAAGTTGTATGTGGCCAAGAATCCCACCGGTCTAGATGACAAAATTGAAGATTTTGAAACTACAGTATTAGCACAGCAACACACAGGAGAAGTTCAGGTCGTGGGCATAGTCGGCTCAGGCGGAGTCGGCAAGACAACTTTGGCTAAGGAGTTTTTCAATCGAAAGAGTTCAGAGTATAGCAAGTCCTACTTTTTATCAGATGTAAGAGAAAATGCAAGAATCTCATTACATTCCTTGCAGAGTAAACTTCTTAAGGGTCTGTTTGGTGATGATCGGCAAATAGACAACATTCATGAAGGTACAGAGACTGTTAGACAATTTCTCTCATCTTCTAAAATATTTTTAATTTTAGATGACATAGATCATGTGAACCAAGTAGATGCCCTTTTACCGGATATAAATGTCTTAGATAAGGATAGCTTAATTTTGATTACATCTAGGGACGAAGGTGTCCTAAAGAGGTCAGGGGTGAAAGAGTCATCCATGTATAGGTTAACAGGCCTTCCTTACCAACATTCGCAAAAGCTCTTTTGCTCATATGCCTTCTGTCACCCGAATCCACACCCGGGATTTGAGGATCTGGTAAATAAGTTTCTAATGGCATGTGATGGATTGCCCCTATCGTTAATAGTGTTTGGGTCACTTGTCTCTGGATATGACGACAGATTTGATTGGGAGGCCATACTTCACCGATTACAACTTCCCAGTGATATAAAGGATAGATTAAAAATTAGTTATGATGCACTTGGCAATGAGGAACAACAGATATTTTTAGATATAGCCTGTTTCTTC

Fln Alignment:

Contig1099___HGVFINHRGPDTKKTFATHLYRRLFERGLKPFLDQEELKVGFNFPSQILGAIRSARVHVAIFSPTYAHSQWCLDELSLMLESGAPIIPIFFQVDPADLRWTDQKKKGVYAEALNELQMKTRDDPQTDEKKPRYDSATLQKWRKALSDVADISGF--DLKGKFNGDEGLLLDAVVKRVVELMPPNTKLYVAKNPTGLDDKIEDFETTVLAQQHTXXXXXXXXXXXXXXXKTTLAKEFFNRKSSEYSKSYFLSDVRENARISLHSLQSKLLKGLFGDDRQIDNIHEGTETVRQFLS--SSKIFLILDDIDHVNQVDALLP----DINVLDKDSLILITSRDEGVLKRSGVKESSMYRLTGLPYQHSQKLFCSYAFCHPNPHPGFEDLVNKFLMACDGLPLSLIVFGSLVSGYDDRFDWEAILHRLQ--LPSDIKDRLKISYDALGNEEQQIFLDIACFF
E9NZS7______________YDVFISHSGKDVKKTFASHLYYRLVSFGLRVFLDYQELRKGEDFPCEIKGAIKNASVHIAVFSPTYAASQWCLDELVLMLETRAPIIPVFYHVEPTELR--RSHGDGVYARSLSNLEKKRKHD-----NEPRYDSGTIENWRNALSQVADKSGFVLDLDLGFGGDEGKLLDQLVE--VVLKKGKKKLDVARYPTGLGDLVKDFETKLSLQQHGERVQFVGITGLGGAGKTTLAKELFNRKSSEYSKSCFLFDVREEAKKSITSLQRKLLKGLSASKEEIDSKDGGIEILRRHFSVLSAPVLLVLDDVDHHDQVHALLPVTDKGILTLRPSSLILITSRDKNVLTRSGVQETSIYKMTGLSRERSRELFCSHAFCHPHPLSGFEPLVDQFLEACSGLPLSLKVFGGLLCRNTDKSYWKKQMKKLRKTLHKDIQKSLQVSYDALDKEEQQIFLDIACFF

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
334		28		71	1.0
339	85	14			0.993533
376	28	71			1.0
431	42		57		1.0
433		85	14		0.993533
485		83		16	0.994512
490		83	16		0.994512
522	20			80	0.995493
530		20	80		0.995493
557	33	66			0.997452
558	66		33		0.997452
654		83		16	0.994512
684	66		33		0.997452
712	66			33	0.997452
718		66	33		0.997452
719	33			66	0.997452
720	33	66			0.997452
738		33	66		0.997452
746		33	66		0.997452
759	66		33		0.997452
760			66	33	0.997452
804	33		66		0.997452
822		66		33	0.997452
827	66	33			0.997452
829			33	66	0.997452
834	66	33			0.997452
835			66	33	0.997452
840	66	33			0.997452
842			66	33	0.997452
846		66	33		0.997452
851	66			33	0.997452
852			66	33	0.997452
854	66		33		0.997452
856		66		33	0.997452
861		66		33	0.997452
862	33		66		0.997452
914	66		33		0.997452
1208		75		25	0.996473
1331	80			20	0.995493
1499	80	20			0.995493
1503		20		80	0.995493
1524	71		28		1.0
1536	16			83	0.994512
1538	16	83			0.994512
1539		83	16		0.994512
1543	16			83	0.994512
1553	20		80		0.995493
1603	40		40	20	1.0
1621	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
123	141	TTTCTA TTTCTA TTTCTA T	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain