SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene825

Length: 2405 nt

UniGene Fasta

>sp_v3.0_unigene825
ACGGGACGATACAGAATCTAGGGCTCTCTCCCGAACCTGTTCTGTAATCATGGACGCCAGCAGGAAGTTGCGAGGTCGCAGGCCGGGCTCAATTCGTGGTTTGAAGATGTCCGAATGATCTTTTATTGCGGAAATTCACTTCTAGTTTTACCGAATTCATCGAAAGTCGGAATTATTCAACACAAGAAGGTCCCGACGGAGAAAAAGGCAGAAACATTTCCGTGTCGTCCGAAATATCTTCCCGTCAGCAATTTGTGTATCAAGATGTCTGAAAATTTGAATCGGAGTATTGGAGACAATACGGAGTTCTGGTCGAGTTTGGTTTAATTTCTGTAGGAGGTTGTGTTGGCCCTGTTGTGTGGATAAGAGTTGCTTTCATAGCATTTGCAAGGTGTACGTTTTATGTCCAATGGCTATTGTTAAGAGAGGATATAGGGTTTCTGGGGTTAGCAGCCAATCCCAATGTCAGGCACCGTGCAATTCTTCTATTTATGACGACGGGTTTAGTGGGAAGCACTGTCGGCCGCATCGGGACAACGACGATGGCGACGATGATGCAGACTCCAGTTCTGCGTCGGAGTCGTCGGAGTCGTCGGATGGTTGCGAGGTTGGAGAGAGAGGCACAGAATTGTGCCGTGTTGGGGAGCAGAATTGTAATATCCCTTATGAGCTTTTCGACCTGCCAGACTTGAGACCTGTATTGTCCCTTGATACGTGGAATCACTTCCTTACAGATGAAGAGCGCTTCAGACTTTCGGCTTATCTCCCCGATGCTGATCAGCAGACATTCATGCATACGTTGAAAGAATTGCTGGCTGGAGAGAATTTCCATTTTGGCAGCCCTCTGGTTGAACTTTTTGATATGTTGAAAGGGGGTCTTTGTCAGCCGCAAGTGGCTCGGTACCGGGAAGGTCTGAAGTATTTGGAGAGGAAAGAGCATTATCACTTTTTAAGAACATATCAGGATAACATGGTCAGTAATCTTCTTGAAATGAGGGAAACTTGGGAACGCTGCAGCCACCTAAGTATTGATGATAGGCTTAGCATTTGGAATTTAAGGAAATGTAGGAAGGCTTTCAGAGCTGAACCGCAAGCTTTGCCACCAAGGCTTTCAGAGCAAAAGCAGAAATTCAAGCATTTACTAAATGAAAAAATAGGACCATTGACACGCTCGATCAAAATGCCCAAGCTAACTAGGGATGAAAACTTGTTGGAAGTAGTTGAGCCTCTACCGAAACAAAAGGCCTCGACTAACAAACTTGATGGCAAGTATTCATTGGCAGGAAAGATGCATGCTAAGACTTCTTTGGAGGTCCACAGCTCTAGGACATTGCAATCGAAAGAGACTGAAAAATTTGGAAAACGATTTCCAGAAGGAATGCTGAAACTAGGAAAAAGGAATGTTTTGATGAGGCATGGGTGGACTGGATTGCAGCCTGAAATCGGTCAATATGCACAATTTTCAGAATTACAGGATTTAGGAACTAAATCTGAACCATTGTCGTTGCTTCCTTCTGTCAACAAGTGGGAAGCTGATGACTTTGTTGGAGAGACATCATTTACAATGCGGAAGACAAGAAGTAGGACCAAAATTAACAGCTCAGAAACATCTTTCAGTCATGCAAAAGGAAACCAATCTTGGAATTATTCAAATAGCAATGCAGGTCAAGAGAGAAGTAGCTCACCACATGGCAGAAAGTTGGGAAGGATAAAGGAGCCAGAAATGTATAACAGGAAAGGTGTCCAGGCCCCTTCACAGTTCAGTGAAAGCATTGGACGATTCAAGCAAGAAAGCAATCTTGCAAGAGGGAGGACAATTTTTGCAGATTCTGAAAAAAGAGGAGAAAGGACAAAAGTATTGGAAGAGGGCACAAGAAAGCACCCACAAGAACTATCAAAGGAAAAAGTGAATATAATATCATCAAAAAATTCAAGGAAATATCCCCAGGAGAGAGTCATGTTTGATCTTTATTCAGATGCTGAGGGGAAAGGACAAAACTCAGAAAAAATGAAAAGAAATATTTTTGAGCACCAGAAAAGCCCAACTAAACAGTACAGACTACCAGTTGATCATGATTTTGCTTGTAACAAGCAACAGTCCTTGCCATTTTTGCTAAAACAAAATTCCCACAAAGAGGACATGAAACAATCAGAACCATGCAAAGAGAAGAAAGGGAAAACTGACTGTTTTAAAAACTCGAAGAAACTTAAAAGAAAGAATGGAGCAATCAATCAATCATCAAAAGATCTGTTCAGGATCTCAGCAAAGAAAAAGAAATCGATTGAACAGTCCCTGGGAGAGCACCAGGTAGAGTGTCTAGAAGTTCAGTCAGCACTTGCACAGAATAGAAGATATGCATTGGGTGTTAGCTTGTCTTTGGATAACCCAAGATCTGATGAAGGGA

Ace file of the UniGene sp_v3.0_unigene825

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nfrkb, putative n=2 Tax=rosids RepID=B9T3J5_RICCO	-	-	0.0	35%
FL-Next	tr=Nfrkb, putative; Ricinus communis (Castor bean).	-	-	0.0	35%

Source	Gene names
Sma3	At3g45830; F16L2_40; GSVIVT00028262001; OsI_18222; OsJ_16909; PHYPADRAFT_78085; POPTRDRAFT_203922; POPTRDRAFT_752211;

Source	GOs	Term	Type	e value	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G45830.1	" unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match	47%
RefSeq	Arabidopsis thaliana	NP_190169.1	uncharacterized protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002298386.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9T3J5

Fln msg: Distance to subject end: 758 aas, your sequence is shorter than subject: 665 - 1410

Fln protein: MAIVKRGYRVSGVSSQSQCQAPCNSSIYDDGFSGKHCRPHRDNDDGDDDADSSSASESSESSDGCEVGERGTELCRVGEQNCNIPYELFDLPDLRPVLSLDTWNHFLTDEERFRLSAYLPDADQQTFMHTLKELLAGENFHFGSPLVELFDMLKGGLCQPQVARYREGLKYLERKEHYHFLRTYQDNMVSNLLEMRETWERCSHLSIDDRLSIWNLRKCRKAFRAEPQALPPRLSEQKQKFKHLLNEKIGPLTRSIKMPKLTRDENLLEVVEPLPKQKASTNKLDGKYSLAGKMHAKTSLEVHSSRTLQSKETEKFGKRFPEGMLKLGKRNVLMRHGWTGLQPEIGQYAQFSELQDLGTKSEPLSLLPSVNKWEADDFVGETSFTMRKTRSRTKINSSETSFSHAKGNQSWNYSNSNAGQERSSSPHGRKLGRIKEPEMYNRKGVQAPSQFSESIGRFKQESNLARGRTIFADSEKRGERTKVLEEGTRKHPQELSKEKVNIISSKNSRKYPQERVMFDLYSDAEGKGQNSEKMKRNIFEHQKSPTKQYRLPVDHDFACNKQQSLPFLLKQNSHKEDMKQSEPCKEKKGKTDCFKNSKKLKRKNGAINQSSKDLFRISAKKKKSIEQSLGEHQVECLEVQSALAQNRRYALGVSLSLDNPRSDEG

Protein Length: 666

Fln nts: ACGGGACGATACAGAATCTAGGGCTCTCTCCCGAACCTGTTCTGTAATCATGGACGCCAGCAGGAAGTTGCGAGGTCGCAGGCCGGGCTCAATTCGTGGTTTGAAGATGTCCGAATGATCTTTTATTGCGGAAATTCACTTCTAGTTTTACCGAATTCATCGAAAGTCGGAATTATTCAACACAAGAAGGTCCCGACGGAGAAAAAGGCAGAAACATTTCCGTGTCGTCCGAAATATCTTCCCGTCAGCAATTTGTGTATCAAGATGTCTGAAAATTTGAATCGGAGTATTGGAGACAATACGGAGTTCTGGTCGAGTTTGGTTTAATTTCTGTAGGAGGTTGTGTTGGCCCTGTTGTGTGGATAAGAGTTGCTTTCATAGCATTTGCAAGGTGTACGTTTTATGTCCA_-_ATGGCTATTGTTAAGAGAGGATATAGGGTTTCTGGGGTTAGCAGCCAATCCCAATGTCAGGCACCGTGCAATTCTTCTATTTATGACGACGGGTTTAGTGGGAAGCACTGTCGGCCGCATCGGGACAACGACGATGGCGACGATGATGCAGACTCCAGTTCTGCGTCGGAGTCGTCGGAGTCGTCGGATGGTTGCGAGGTTGGAGAGAGAGGCACAGAATTGTGCCGTGTTGGGGAGCAGAATTGTAATATCCCTTATGAGCTTTTCGACCTGCCAGACTTGAGACCTGTATTGTCCCTTGATACGTGGAATCACTTCCTTACAGATGAAGAGCGCTTCAGACTTTCGGCTTATCTCCCCGATGCTGATCAGCAGACATTCATGCATACGTTGAAAGAATTGCTGGCTGGAGAGAATTTCCATTTTGGCAGCCCTCTGGTTGAACTTTTTGATATGTTGAAAGGGGGTCTTTGTCAGCCGCAAGTGGCTCGGTACCGGGAAGGTCTGAAGTATTTGGAGAGGAAAGAGCATTATCACTTTTTAAGAACATATCAGGATAACATGGTCAGTAATCTTCTTGAAATGAGGGAAACTTGGGAACGCTGCAGCCACCTAAGTATTGATGATAGGCTTAGCATTTGGAATTTAAGGAAATGTAGGAAGGCTTTCAGAGCTGAACCGCAAGCTTTGCCACCAAGGCTTTCAGAGCAAAAGCAGAAATTCAAGCATTTACTAAATGAAAAAATAGGACCATTGACACGCTCGATCAAAATGCCCAAGCTAACTAGGGATGAAAACTTGTTGGAAGTAGTTGAGCCTCTACCGAAACAAAAGGCCTCGACTAACAAACTTGATGGCAAGTATTCATTGGCAGGAAAGATGCATGCTAAGACTTCTTTGGAGGTCCACAGCTCTAGGACATTGCAATCGAAAGAGACTGAAAAATTTGGAAAACGATTTCCAGAAGGAATGCTGAAACTAGGAAAAAGGAATGTTTTGATGAGGCATGGGTGGACTGGATTGCAGCCTGAAATCGGTCAATATGCACAATTTTCAGAATTACAGGATTTAGGAACTAAATCTGAACCATTGTCGTTGCTTCCTTCTGTCAACAAGTGGGAAGCTGATGACTTTGTTGGAGAGACATCATTTACAATGCGGAAGACAAGAAGTAGGACCAAAATTAACAGCTCAGAAACATCTTTCAGTCATGCAAAAGGAAACCAATCTTGGAATTATTCAAATAGCAATGCAGGTCAAGAGAGAAGTAGCTCACCACATGGCAGAAAGTTGGGAAGGATAAAGGAGCCAGAAATGTATAACAGGAAAGGTGTCCAGGCCCCTTCACAGTTCAGTGAAAGCATTGGACGATTCAAGCAAGAAAGCAATCTTGCAAGAGGGAGGACAATTTTTGCAGATTCTGAAAAAAGAGGAGAAAGGACAAAAGTATTGGAAGAGGGCACAAGAAAGCACCCACAAGAACTATCAAAGGAAAAAGTGAATATAATATCATCAAAAAATTCAAGGAAATATCCCCAGGAGAGAGTCATGTTTGATCTTTATTCAGATGCTGAGGGGAAAGGACAAAACTCAGAAAAAATGAAAAGAAATATTTTTGAGCACCAGAAAAGCCCAACTAAACAGTACAGACTACCAGTTGATCATGATTTTGCTTGTAACAAGCAACAGTCCTTGCCATTTTTGCTAAAACAAAATTCCCACAAAGAGGACATGAAACAATCAGAACCATGCAAAGAGAAGAAAGGGAAAACTGACTGTTTTAAAAACTCGAAGAAACTTAAAAGAAAGAATGGAGCAATCAATCAATCATCAAAAGATCTGTTCAGGATCTCAGCAAAGAAAAAGAAATCGATTGAACAGTCCCTGGGAGAGCACCAGGTAGAGTGTCTAGAAGTTCAGTCAGCACTTGCACAGAATAGAAGATATGCATTGGGTGTTAGCTTGTCTTTGGATAACCCAAGATCTGATGAAGGGA

Fln Alignment:

Contig825___EVGERGTELCRVGEQNCNIPYELFDLPDLRPVLSLDTWNHFLTDEERFRLSAYLPDADQQTFMHTLKELLAGENFHFGSPLVELFDMLKGGLCQPQVARYREGLKYLERKEHYHFLRTYQDNMVSNLLEMRETWERCSHLSIDDRLSIWNLRKCRKAFRAEPQALPPRLSEQKQKFKHLLNEKIGPLTRSIKMPKLTRDENLLEVVEPLPKQKASTNKLDGKYSLAGKMHAKTSLEVHSSRTLQSKETEKFGKRFPEGMLKLGKRNVLMRHGWTGLQPEIGQYAQFSELQDLGTKSEPLSLLPSVNKWEADDFVGETSFTMR---KTRSRTKINSSETSFSHAKG---NQSWNYSN--SNAGQERSSSPHGRKL
B9T3J5_____________ELGETGAEFCRIGNLTCSVPFELYDLSGLEDILSVDVWNDVLTEDERFSLTKYLPDLDQYTFMRTLKELFEGQNFHFGSPIKKLFEMLKGGLCEPRVALYREGLNFFQKRQHYHLLRKHQNNMVTNLCQIRDAWFNCRGYSIEEKLRVLNIMKSEKS---------------------LMYEKIEEDLESDSSEKEELDDGLWSKKVKVLKDRKSALKL-GRTSA---YEVGANLEFSSRMPSLNLEAAKYGKPNLKGILKLAGSKTLSSKEMGGRLPSV--------YQGLETNSRPYGFPVPNSRQKAMAYDPGAALRLRDQMRTDDDNDDNAEETIYGMGLGVQRDRSMTYSGLMEKSGVSRSGKKHDMRI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1665		87	12		0.999964
1740	69			30	1.0
1821	12			87	0.992554
1834		11		88	0.923564
1932	75		25		0.996473
1989	40		60		1.0
2153		42		57	1.0
2161	57		42		1.0
2190	50		50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
2226	2239	CAAT CAAT CAAT CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain