SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene339

Length: 1964 nt

UniGene Fasta

>sp_v3.0_unigene339
GAGACTGAGGGGTATAACTATTGTTGTAAAAAGGTAGGGCTAAAGGCAGTTTTACCCCGTGGATTTCTTCAGCGCTGGAAAAGATGATCAGCTCTACAGATAAAAAGGCAGCACATAGATCTATTCAATTACAACACAGGCAGATGCATACACCGATCTGAGGAGGTGCAGGAGCTGCTGGATTGGTCAAAACAGTCATACAGATCCAGGCAGAGTGGAGACGAGACTAGACTCATATTTCAATTTGAGAGAGGGAGGAGTGCAGAGTTCGACTCTAGAAGGAGGAGGGAGCTCAGATGGGTGGCAAAGCACAGATCTCACTCGGATGGATTGAATGGATAAAGGGTTTGCTTCTTGTTCTATATGACATTCTCTTTCAGAGGATTCTTGCCTGCCACCTTAAAAATCCCTTACAGATACCTCCCATGAATGGTTTAACCTGCATTGTAACTGGTGCTACAAGTGGAATTGGCCTAGAAATTGCAAAACAATTGGCAGAAGGAGGGGCACATGTTGTTATGGCATGCAGGAAAACAAGGGCTGCCAATGATTTGATACAGAAATGGCAAAAGGAATGCTCTGGGGTGACTGGCTTTCTTGATATAGAAGTGATGGAGTTAGATCTTCTTTCACTTGAATCTGTTGAAAACAACACAGCAACATGCAAACACCGACAAGAGCACCTACAGGAGCTGATGAATAAGGCAAAAAAGTCATACAGAGCAAAACAGAAGGCAGACGACAAAAAACGCATAGAACAACATAAGAAAGGGAAGAATCCAGAGCCAGAACCTAGAACGAGGAGGCACCTAACATCGCTAACAAAGCACACACCTTCTCGAGTAGTGAATGTCAACTCAAATATGCATCATTTAGGTTTTGTTGACTCCAATGACCTGAATGTTACTTCTGGAAAGAGAAAATATAACAGTGTCACTGGTTACTCAGGAAGCAAACTTGCACAGATTATGTTCAGCAGTGTGCTTCAGAGAAAACTACCTTCTGAAGCTGGTCTAAATGTGATGTGTGTTTCTCCAGGAGTGGTTATGACAAATGTAGCACGAGACTTACCTCGATTTTTGCAGACCGGTTATCACCTAATTCCATATTTCCTTTTTAATGCTCAAGAAGGTGCTAGAAGTACATTATTTGCTGCAACGGATCCTGACATTCCAGAGTATTGCAGTGTCCTAAAGGCTGATGATTGGCCAGTTTGTCCATATTTTTCTGGTGACTGTCGTCCAACAAATGCTTCAGCAGAAGCACACAATGTAGGGACTGCTATGAAGGTTTGGGATAAGACATTGGAACTCATTGGCCTTCCTTCAAACACTGTTGAAAGGCTTATTGAAGGTGAAGTGGTTCCATGTAAATATTGTCATCAGAATACGACAGAAGTGGACTACTGACTGGCCAGAGATTCAGATGTGTTCCAAATTCAGTTCTTTTTGTATTCCAAGTATCAAAACCTTCTGCAACCGATTTTCTCATGCCTCAAAATGGTCATGAAAGGCAACATGCACCTTTTGTTTATTCTTATGGCAATTTGCATTCTCAGATCTGTGCTTTTGTTATGAGATTTCCAAATCACAAGGGCATTCTATCATATATTCCCTAAGGCAAGTCCTTGGTATCATTTATTATGCGGTAACCTTTGAAGAACTGAGTTGAACTTGTGTTGACTGTAAGCGAGAAAAGATGACAATTTTGTGGCCATGGAAATGTTTTTCTAGGGATAAATTAAGCTGCAAGCAGAAGATAACATAGTTAGGATCTTGGTTATTGGGATATCTAAATTGGAAATCACCACACTCAGCTAGATATAGTCTAAAATCTGCTTTTAGGCAACCTTTGCTGAGAGTGTAAATCTCATTTATAATGTGATACTTGATTTCATGTTTAATTTATTTGTCAAAGCTGTATCTGAAGATCAACCATTCCAATCCGCAACTTCTATGATTTGT

Ace file of the UniGene sp_v3.0_unigene339

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Forever young oxidoreductase n=2 Tax=Solanum RepID=Q8W2K0_SOLLC	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Forever young oxidoreductase	-	-	2.616e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protochlorophyllide reductase.	EC:1.3.1.33	-	1.768e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Porphyrin and chlorophyll metabolism	00860	1.768e-06	%
Sma3	Metabolic pathways	01100	1.768e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	1.768e-06	%

Source	Gene names
Sma3	AT4g27760; At4g27760; At5g53090; At5g53100; FEY; FEY3; GSVIVT00018015001; MtNOD712; OJ1442_E05.18; Os02g0116500; OsI_05582; OsJ_05120; PHYPADRAFT_162074; POPTRDRAFT_265682; POPTRDRAFT_554880; RCOM_0470520; RCOM_1221570; SDM1_56t00001; T27E11.10;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G27760.1	FEY, FEY3 NAD(P)-binding Rossmann-fold superfamily protein chr4:13844151-13846563 FORWARD LENGTH=376	55%
RefSeq	Arabidopsis thaliana	NP_194506.4	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002329691.1	predicted protein, partial [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADW2

Fln msg:

Fln protein: MGGKAQISLGWIEWIKGLLLVLYDILFQRILACHLKNPLQIPPMNGLTCIVTGATSGIGLEIAKQLAEGGAHVVMACRKTRAANDLIQKWQKECSGVTGFLDIEVMELDLLSLESVENNTATCKHRQEHLQELMNKAKKSYRAKQKADDKKRIEQHKKGKNPEPEPRTRRHLTSLTKHTPSRVVNVNSNMHHLGFVDSNDLNVTSGKRKYNSVTGYSGSKLAQIMFSSVLQRKLPSEAGLNVMCVSPGVVMTNVARDLPRFLQTGYHLIPYFLFNAQEGARSTLFAATDPDIPEYCSVLKADDWPVCPYFSGDCRPTNASAEAHNVGTAMKVWDKTLELIGLPSNTVERLIEGEVVPCKYCHQNTTEVDY*

Protein Length: 372

Fln nts: GAGACTGAGGGGTATAACTATTGTTGTAAAAAGGTAGGGCTAAAGGCAGTTTTACCCCGTGGATTTCTTCAGCGCTGGAAAAGATGATCAGCTCTACAGATAAAAAGGCAGCACATAGATCTATTCAATTACAACACAGGCAGATGCATACACCGATCTGAGGAGGTGCAGGAGCTGCTGGATTGGTCAAAACAGTCATACAGATCCAGGCAGAGTGGAGACGAGACTAGACTCATATTTCAATTTGAGAGAGGGAGGAGTGCAGAGTTCGACTCTAGAAGGAGGAGGGAGCTCAG_-_ATGGGTGGCAAAGCACAGATCTCACTCGGATGGATTGAATGGATAAAGGGTTTGCTTCTTGTTCTATATGACATTCTCTTTCAGAGGATTCTTGCCTGCCACCTTAAAAATCCCTTACAGATACCTCCCATGAATGGTTTAACCTGCATTGTAACTGGTGCTACAAGTGGAATTGGCCTAGAAATTGCAAAACAATTGGCAGAAGGAGGGGCACATGTTGTTATGGCATGCAGGAAAACAAGGGCTGCCAATGATTTGATACAGAAATGGCAAAAGGAATGCTCTGGGGTGACTGGCTTTCTTGATATAGAAGTGATGGAGTTAGATCTTCTTTCACTTGAATCTGTTGAAAACAACACAGCAACATGCAAACACCGACAAGAGCACCTACAGGAGCTGATGAATAAGGCAAAAAAGTCATACAGAGCAAAACAGAAGGCAGACGACAAAAAACGCATAGAACAACATAAGAAAGGGAAGAATCCAGAGCCAGAACCTAGAACGAGGAGGCACCTAACATCGCTAACAAAGCACACACCTTCTCGAGTAGTGAATGTCAACTCAAATATGCATCATTTAGGTTTTGTTGACTCCAATGACCTGAATGTTACTTCTGGAAAGAGAAAATATAACAGTGTCACTGGTTACTCAGGAAGCAAACTTGCACAGATTATGTTCAGCAGTGTGCTTCAGAGAAAACTACCTTCTGAAGCTGGTCTAAATGTGATGTGTGTTTCTCCAGGAGTGGTTATGACAAATGTAGCACGAGACTTACCTCGATTTTTGCAGACCGGTTATCACCTAATTCCATATTTCCTTTTTAATGCTCAAGAAGGTGCTAGAAGTACATTATTTGCTGCAACGGATCCTGACATTCCAGAGTATTGCAGTGTCCTAAAGGCTGATGATTGGCCAGTTTGTCCATATTTTTCTGGTGACTGTCGTCCAACAAATGCTTCAGCAGAAGCACACAATGTAGGGACTGCTATGAAGGTTTGGGATAAGACATTGGAACTCATTGGCCTTCCTTCAAACACTGTTGAAAGGCTTATTGAAGGTGAAGTGGTTCCATGTAAATATTGTCATCAGAATACGACAGAAGTGGACTACTGA___CTGGCCAGAGATTCAGATGTGTTCCAAATTCAGTTCTTTTTGTATTCCAAGTATCAAAACCTTCTGCAACCGATTTTCTCATGCCTCAAAATGGTCATGAAAGGCAACATGCACCTTTTGTTTATTCTTATGGCAATTTGCATTCTCAGATCTGTGCTTTTGTTATGAGATTTCCAAATCACAAGGGCATTCTATCATATATTCCCTAAGGCAAGTCCTTGGTATCATTTATTATGCGGTAACCTTTGAAGAACTGAGTTGAACTTGTGTTGACTGTAAGCGAGAAAAGATGACAATTTTGTGGCCATGGAAATGTTTTTCTAGGGATAAATTAAGCTGCAAGCAGAAGATAACATAGTTAGGATCTTGGTTATTGGGATATCTAAATTGGAAATCACCACACTCAGCTAGATATAGTCTAAAATCTGCTTTTAGGCAACCTTTGCTGAGAGTGTAAATCTCATTTATAATGTGATACTTGATTTCATGTTTAATTTATTTGTCAAAGCTGTATCTGAAGATCAACCATTCCAATCCGCAACTTCTATGATTTGT

Fln Alignment:

Contig339___MGGKAQISLGWIEWIKGLLLVLYDILFQRILACHLKNPLQIPPMNGLTCIVTGATSGIGLEIAKQLAEGGAHVVMACRKTRAANDLIQKWQKECSGVTGFLDIEVMELDLLSLESVENNTATCKHRQEHLQELMNKAKKSYRAKQKADDKKRIEQHKKGKNPEPEPRTRRHLTSLTKHTPSRVVNVNSNMHHLGFVDSNDLNVTSGKRKYNSVTGYSGSKLAQIMFSSVLQRKLPSEAGLNVMCVSPGVVMTNVARDLPRFLQTGYHLIPYFLFNAQEGARSTLFAATDPDIPEYCSVLKADDWPVCPYFSGDCRPTNASAEAHNVGTAMKVWDKTLELIGLPSNTVERLIEGEVVPCKYCHQNTTEVDY
D5ADW2_____________MGGKAQISLGWIEWIKGWLLVLYDILFQRILACHLKNPLQLPPLNGLTCIVTGATSGIGLEMAKHLAEGGAHVVMACRKTRAANDLIQKWQKECSGMAGLLDIEVMELDLLSLESVGKFASAWNARQGPLHVLINNAGIFSIGAPQTFSKDGFEEHMQVNHLAPALLTLLLLPSLIRGSPSRVVNVNSNMHHLGFVDSNDLNVTSGKRKYSSVIGYSGSKLAQIMFSSVLQKKLPSEAGLNVMCVSPGVVMTNVARDLPRIIQTGYHLIPYFLFSAQEGARSTLFAATDPDIPEYCSVLRADDWPVCPYFSGDCRPTNASAEAHNVDSAMKVWDKTLELIGLPSNAVERLMEGEVVPCKYCHQNMTEVDY

SNPs (tot: 3)

Position	A %	C %	G %	Probability
107		25	75	0.996473
109	25	75		0.996473
1891	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain