SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene327

Length: 1894 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene327

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caldesmon multi-domain protein	-	-	7.0e-20	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Auxilin-like protein	-	-	2.43e-23	-

Source	Gene names
Sma3	10A19I.11; AT1G21660; AT4g12770; AT4g12780; At1g21660; At4g12770; At4g12780; At4g36520; B1157F09.8; CHLREDRAFT_6783; F1B16.14; F22H5.15; F8K7.8; GSVIVT00003893001; GSVIVT00004408001; GSVIVT00004738001; GSVIVT00007990001; GSVIVT00008238001; GSVIVT000145880

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	starch synthase activity	GO:0009011	Molecular Function	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	glucan biosynthetic process	GO:0009250	Biological Process	-
Sma3	retrograde transport, endosome to Golgi	GO:0042147	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	SNF2-related	IPR000330	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Lipid-binding START	IPR002913	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3		IPR009756	-	-
Sma3	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	-
Sma3	Vps54-like	IPR012501	-	-
Sma3	Starch synthase, catalytic domain	IPR013534	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G12770.1	Chaperone DnaJ-domain superfamily protein chr4:7506736-7511408 REVERSE LENGTH=891	65%
RefSeq	Arabidopsis thaliana	NP_001190708.1	auxilin-related protein 2 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002301577.1	predicted protein, partial [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAW0

Fln msg: your sequence is longer than subject: 282 - 112

Fln protein: MAAERAAVERAATEVRLRAERAAVERANAEARERAAERASAERAAAAKERQRRTDNDLDSFFSMGHRPNSAPKQRPAAPDPTSASQVQNKGFSSEGPRRPPAGVPPGLRKTTPPTNVADDLTSLFTVPSSEEFQEFEGETEERRRARLDRHQRTIERASKALAEKNERDLQAQRDQAERHRFAETLDADIKRWAAGKEGNLRALLSTLQYVLWPEAGWQPVSLTDIIVGSSVKKVYRKATLCVHPDKVQQKGATIQQKYIAEKVFDLLKEAWNKFNSEELF*

Protein Length: 283

Fln nts: AGAACGTGAGAGAGAAAGGGAAAGAGAGAAAGACAGAATAGCTGTTGAGAGGGCAACTAAAGAGGCACGTGACAGGGCAGCTATCGAAGCACGCGAGAAATCACAAAGAGCTGCTGTTGAGAGGGCAACCAAAGAGGCACGTGAGAGGGCAGCTACAGAGGCAAGGGAACGTGCAGAGAGAGCAGCTGCAGAGAGGGCAGCTGCGGAGGCAAGGGAACGGGCAGAGAGGGCAGCTTTTGAAAGGGCAGCTGCAGAGGCAAGAGAAAGAGCCGCTGCAGAAGCAAGGGAAAGA_-_ATGGCAGCAGAGAGAGCTGCTGTAGAACGAGCGGCAACAGAGGTGAGGCTTAGAGCAGAGCGTGCTGCAGTAGAAAGAGCAAATGCTGAGGCTCGAGAACGTGCTGCAGAAAGAGCATCTGCTGAGAGGGCTGCTGCAGCAAAAGAAAGGCAAAGGAGAACTGACAATGATCTTGACTCTTTCTTTAGTATGGGTCATCGACCAAACAGTGCACCTAAACAAAGACCTGCTGCTCCGGATCCCACTTCTGCTTCACAAGTTCAAAACAAGGGGTTTTCTAGTGAAGGGCCTCGGAGACCACCTGCAGGGGTACCACCAGGCCTTAGGAAAACAACTCCACCAACAAACGTGGCTGATGATTTAACATCTCTTTTCACTGTACCATCATCTGAAGAGTTTCAAGAATTTGAAGGTGAAACTGAAGAGAGAAGGAGAGCTAGGTTGGACCGACATCAGCGAACCATTGAACGTGCGAGCAAAGCTTTAGCTGAAAAGAATGAACGTGATTTGCAAGCTCAGAGAGATCAAGCTGAGAGACATAGATTTGCAGAAACATTGGATGCTGATATTAAGCGGTGGGCAGCGGGGAAAGAAGGAAATTTGAGAGCATTGCTCTCAACATTACAATATGTTCTTTGGCCAGAAGCTGGCTGGCAGCCAGTATCATTGACAGATATCATTGTTGGTTCTTCTGTCAAGAAAGTTTATAGGAAAGCCACTTTGTGTGTGCACCCAGATAAGGTGCAGCAAAAGGGTGCAACTATCCAACAAAAATATATTGCTGAGAAGGTTTTTGATCTCTTAAAGGAGGCCTGGAACAAATTCAATTCAGAAGAACTCTTCTAG___TGATGAAAGTTTTGAGTCTTTGGTAACTGGATATTTTCTTCAACAAGATCGGAGGACGTTGTGAAGGTCAGTTTCACTGCAACCTGAATATAAAAGTTCCGCTATTATTTTATAGGTCTCAAATTCAGATTCATGGATCTTGTTTAGCATGATCACGACAGATCTGCAACCAATTTCCGGACAAGGTTCAGGTTCAGCAGTCGACATGTGTGAAGTTTGTAGAATTGGTTATAAGTATTATTCCATGCACCAGGGCTGTGTCACAGGCCTATTTGTTTTGGGGCTTTTATGGAAGGCAATTTATTCTCTTACAATATGATTTTTTAGCCTGATGTAACATGTGCTAGACTAGGCTTTTTACGTAGATGACCTGTGTCTAGATATAGGCTGTTTCATTACTGTGAATGGTGTGGACGTCTTGATCAATGCGTGTACCGTTGGTTTTGACCACTTCATCTGAGTGGCATGGTCTCATTCTACGAGTTGTATTGATAGTAATCTACACAGTCATGTTTAGTTAATAGATTTTTCTTAGACTTCATTCTTGCATTGGACTCGAAAAAAGCATGTTTAGCATATGCTTCTATAATGTAATTCTCCAAGATAGTGTAATGGAAATATCAAAGAAGAGGATGGAGTGCAGAAAATTAGTGCTCTTTGAGCGGTACATAATATAATTTCATATGCTAATGCAGATTTACTTTTAGGGCATCAAATTATACAAAAGATATATGGTGGAAACATAAATATTTGACA

Fln Alignment:

Contig327___LQAQRDQAERHRFAETLDADIKRWAAGKEGNLRALLSTLQYVLWPEAGWQPVSLTDIIVGSSVKKVYRKATLCVHPDKVQQKGATIQQKYIAEKVFDLLKEAWNKFNSEELF
D5AAW0_____________MQAQRDQAERHRFAETLDAEIKRWAAGKEGNLRALLSTLQYVLWPESGWQAVSLTDIIIGSSVKKVYRKATLCVHPDKVQQKGATIQQKYIAEKVFDLLKEAWNKFNSEELF

SNPs (tot: 3)

Position	A %	C %	G %	Probability
127	75		25	0.996473
139	80		20	0.995493
1782	76	23		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain