SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene324

Length: 2414 nt

UniGene Fasta

>sp_v3.0_unigene324
TCTGAATCTAGCGAAGCAGCAGAAATAAGAGTATCAGGAACTAAAAATGGATCGGCACGATTACGCCGCTGCAGCTGCAGCAGCTGCGGCCTTCGCCCAGCAGCAAGCAGCAGCTGCCCAACAACAGTTTGGCTTCCAGCAATTCCAAGGAGGTCCACCACCCCCTTCAGCCCAGCCATTCCTCCCCCACCACCCATCAATGCAATTCCCTTCTACTTACCATCAGCAACTTCACCACCACGGCCACCTCCCACACCAACAGCACAGTCACTCATCCTCCTCCTCTCGCGCCGTCGCCGACCCCCAGCGCCCCACACATCCTTCCTCCTCAGCCCTTCTTCAATCCATGGGACGCTCCGCCTCCCCCGGTTCCGCCTCCAGCAGACGCAGATTTGCAGAAACGCATTGATAAATTGGCCGAATACGCCGCTAAGAATGGCCCTGATTTCGAAAAAATGATCAGGGAAAAGCAGCAGGACAACCCTGCTTACAACTTCCTCTTTGGGGCCGAAGGCCACGGGTATTACAGATACAAGCTCTGGCTATGCACTCGCCCAATCACTGCTAACTTCAGCCATGGTATGGGTAGCATGAATCCGGGTTTGACATCCATGGGTTCTTTGAATTCTCCACTGCAAACCCTCAATCCTCCCCTAAACCCTGGATTGAGCTCGGCTTTGAACCCTGTTCTGAGCAATTCACTATTGGGTGCAGCACCGCCTCTTCATCATTCTGGGCCGTTTCCTGCATTCTATGATCAGCATCCGCAGCCGCCGCCGCAGCATTCTCAGCCCCTTTACTCTCAATCTCGCTCGGATTACGAGCCCATGACAAGGTCATTCAAAGGGCTTTCTGGACCGCTTCCTTCTGATGTTGCGGCCGAGCTTTATAACGTGCTCAACAATCTTACAGGGACGAAGGAGTCAATTAAGGGCGCGAAGACCTGGTTTATGCAGAGGTCCCCATTTGCGCCGGCTCTAGCGGAGGCTTTGAAGGATAGGGTTATGGCTCTGGACGATGCCGAAAAACAGTTGCATATCATCTATTTGGCAAATGACATCCTTTTTGACAGTTTGCAGCGTCGTATCAATCCAAAGGAGCTAGACAATGAGGCTCTTGCTTTTCAGCCTGTATTGGGAAACATGCTTGCGAGGATTTATCACAATCCTCAAAACAAAGATGCAAATCAATCACGTCTGCAAAAGATACTACAGTTTTGGGCTTCCAAGGAAGTTTATGATACTGAAACTATCTATAGTTTAGAAGGTGATATGTTAGCTGGCCCACCGGCTCCAGCTGGATCTGTAAAAGAGTCTTCTCTACAAGAGCCGTCTGTTGGTTCGTCAGGAATCTTACAATCATCCACCCAAAATCCTCCTCAATGGCCATTGGATTTACAAAGAAACTCCCAGCCATCAACAGAACAGGAACAGCAAGATAAAGCTATACCGCCTGTTTCAACATCACAATTCTTTGGATCAAGTACACAGTTTAATTCAACAGCATCTCAGATCTTTGCAACCAATACAGTTTCCTCTATGCAATATCCATCAATGGCTCAGTCTTTTCATGGATCACTACCTACTCCTACCCCTGCAGCTTCTCAGTTGACTCCACAAGTGCCAAATCTATCTGCTGCTAGAGGTGGGGATCAGCCTCCATATCCATTGTTTCCTCCAGGGCTTATACCAGGAATGGTTCGAAAAATGCAAATAGGAAGTGGGGTTCCTTACTCTCCTTTGAGCCCTCTGGATATCCCTACAGTAATTCCTCCGTCTACATTATCTTCATCGTATATTCTTGAAAGAGTTTCAAAGTTTTTCAAAGAGATAGGTGAAGTCAATCCTTTAGAAAATCAGTCAACTTTATCTGACTCAATAGAGGATGATGAAAGGGAGCAGCCAAGCCGTACAGGTGGTGCTTGTATTCCACCTCCACCTAATTTGCAGGTTGATGCAGATACTGGTACACTTCCAGATGGAAGTGTTGAACACAAGCCAGGATCAACTAGTACAGGAAGGTTGGGTCTTGGAGCTACTGCTGATCCTAATGAAATGAGCCAGTATGATGATGTTTATTCTTCATACAGGAAGCAAAGGAGCTCAAGTTATCATACATCAATGAGTGCCAGAGCTTCAGCAAGATAGTTGAAGTTTATTATCCTTTTTACAGGTACTGGCATACTGCTTGTGTAATGCCAACAGTTTGTAGAAATTTTCGAAGTGCTCCATAACATCAATATTTTATTATTTTCTATAGAAACACTGGTTAACTTCACAGGTTGTAACAGTTATCCATCGTTACAAATGGATTGTACAGTGCAAGACCTAAATTTTTCCTTTGAAACAGTTTTGTAGTAGGTTAAACAGAAAATTGCAAAATTTCTTAAATTTAAAATGATGAAGGATTTTGGC

Ace file of the UniGene sp_v3.0_unigene324

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	61%

Source	Gene names
Sma3	AT4g31200; At4g31200; GSVIVT00002349001; GSVIVT00027413001; GSVIVT00031563001; Os06g0682700; OsI_24205; OsJ_22392; P0009H10.1; P0547F09.34; PHYPADRAFT_41668; POPTRDRAFT_271667; POPTRDRAFT_586364; POPTRDRAFT_790676; PPS2; RCOM_0205450; VITISV_028674;

Source	GOs	Term	Type	Identity
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SWAP/Surp	IPR000061	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	RNA polymerase II, large subunit, CTD	IPR006569	-	-
Sma3	RNA polymerase II-binding domain	IPR006903	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31200.2	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein chr4:15162323-15164568 REVERSE LENGTH=650	52%
RefSeq	Arabidopsis thaliana	NP_974650.1	SWAP/Surp domain-containing protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002332106.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: F6H1T4

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: KWIGTITPLQLQQLRPSPSSKQQLPNNSLASSNSKEVHHPLQPSHSSPTTHQCNSLLLTISNFTTTATSHTNSTVTHPPPLAPSPTPSAPHILPPQPFFNPWDAPPPPVPPPADADLQKRIDKLAEYAAKNGPDFEKMIREKQQDNPAYNFLFGAEGHGYYRYKLWLCTRPITANFSHGMGSMNPGLTSMGSLNSPLQTLNPPLNPGLSSALNPVLSNSLLGAAPPLHHSGPFPAFYDQHPQPPPQHSQPLYSQSRSDYEPMTRSFKGLSGPLPSDVAAELYNVLNNLTGTKESIKGAKTWFMQRSPFAPALAEALKDRVMALDDAEKQLHIIYLANDILFDSLQRRINPKELDNEALAFQPVLGNMLARIYHNPQNKDANQSRLQKILQFWASKEVYDTETIYSLEGDMLAGPPAPAGSVKESSLQEPSVGSSGILQSSTQNPPQWPLDLQRNSQPSTEQEQQDKAIPPVSTSQFFGSSTQFNSTASQIFATNTVSSMQYPSMAQSFHGSLPTPTPAASQLTPQVPNLSAARGGDQPPYPLFPPGLIPGMVRKMQIGSGVPYSPLSPLDIPTVIPPSTLSSSYILERVSKFFKEIGEVNPLENQSTLSDSIEDDEREQPSRTGGACIPPPPNLQVDADTGTLPDGSVEHKPGSTSTGRLGLGATADPNEMSQYDDVYSSYRKQRSSSYHTSMSARASAR*

Protein Length: 702

Fln nts: TCTGAATCTAGCGAAGCAGCAGAAATAAGAGTATCAGGAACTAAAA_-_ATGGATCGGCACGATTACGCCGCTGCAGCTGCAGCAGCTGCGGCCTTCGCCCAGCAGCAAGCAGCAGCTGCCCAACAACAGTTTGGCTTCCAGCAATTCCAAGGAGGTCCACCACCCCCTTCAGCCCAGCCATTCCTCCCCCACCACCCATCAATGCAATTCCCTTCTACTTACCATCAGCAACTTCACCACCACGGCCACCTCCCACACCAACAGCACAGTCACTCATCCTCCTCCTCTCGCGCCGTCGCCGACCCCCAGCGCCCCACACATCCTTCCTCCTCAGCCCTTCTTCAATCCATGGGACGCTCCGCCTCCCCCGGTTCCGCCTCCAGCAGACGCAGATTTGCAGAAACGCATTGATAAATTGGCCGAATACGCCGCTAAGAATGGCCCTGATTTCGAAAAAATGATCAGGGAAAAGCAGCAGGACAACCCTGCTTACAACTTCCTCTTTGGGGCCGAAGGCCACGGGTATTACAGATACAAGCTCTGGCTATGCACTCGCCCAATCACTGCTAACTTCAGCCATGGTATGGGTAGCATGAATCCGGGTTTGACATCCATGGGTTCTTTGAATTCTCCACTGCAAACCCTCAATCCTCCCCTAAACCCTGGATTGAGCTCGGCTTTGAACCCTGTTCTGAGCAATTCACTATTGGGTGCAGCACCGCCTCTTCATCATTCTGGGCCGTTTCCTGCATTCTATGATCAGCATCCGCAGCCGCCGCCGCAGCATTCTCAGCCCCTTTACTCTCAATCTCGCTCGGATTACGAGCCCATGACAAGGTCATTCAAAGGGCTTTCTGGACCGCTTCCTTCTGATGTTGCGGCCGAGCTTTATAACGTGCTCAACAATCTTACAGGGACGAAGGAGTCAATTAAGGGCGCGAAGACCTGGTTTATGCAGAGGTCCCCATTTGCGCCGGCTCTAGCGGAGGCTTTGAAGGATAGGGTTATGGCTCTGGACGATGCCGAAAAACAGTTGCATATCATCTATTTGGCAAATGACATCCTTTTTGACAGTTTGCAGCGTCGTATCAATCCAAAGGAGCTAGACAATGAGGCTCTTGCTTTTCAGCCTGTATTGGGAAACATGCTTGCGAGGATTTATCACAATCCTCAAAACAAAGATGCAAATCAATCACGTCTGCAAAAGATACTACAGTTTTGGGCTTCCAAGGAAGTTTATGATACTGAAACTATCTATAGTTTAGAAGGTGATATGTTAGCTGGCCCACCGGCTCCAGCTGGATCTGTAAAAGAGTCTTCTCTACAAGAGCCGTCTGTTGGTTCGTCAGGAATCTTACAATCATCCACCCAAAATCCTCCTCAATGGCCATTGGATTTACAAAGAAACTCCCAGCCATCAACAGAACAGGAACAGCAAGATAAAGCTATACCGCCTGTTTCAACATCACAATTCTTTGGATCAAGTACACAGTTTAATTCAACAGCATCTCAGATCTTTGCAACCAATACAGTTTCCTCTATGCAATATCCATCAATGGCTCAGTCTTTTCATGGATCACTACCTACTCCTACCCCTGCAGCTTCTCAGTTGACTCCACAAGTGCCAAATCTATCTGCTGCTAGAGGTGGGGATCAGCCTCCATATCCATTGTTTCCTCCAGGGCTTATACCAGGAATGGTTCGAAAAATGCAAATAGGAAGTGGGGTTCCTTACTCTCCTTTGAGCCCTCTGGATATCCCTACAGTAATTCCTCCGTCTACATTATCTTCATCGTATATTCTTGAAAGAGTTTCAAAGTTTTTCAAAGAGATAGGTGAAGTCAATCCTTTAGAAAATCAGTCAACTTTATCTGACTCAATAGAGGATGATGAAAGGGAGCAGCCAAGCCGTACAGGTGGTGCTTGTATTCCACCTCCACCTAATTTGCAGGTTGATGCAGATACTGGTACACTTCCAGATGGAAGTGTTGAACACAAGCCAGGATCAACTAGTACAGGAAGGTTGGGTCTTGGAGCTACTGCTGATCCTAATGAAATGAGCCAGTATGATGATGTTTATTCTTCATACAGGAAGCAAAGGAGCTCAAGTTATCATACATCAATGAGTGCCAGAGCTTCAGCAAGATAGTTGAAGTTTATTATCCTTTTTACAGGTACTGGCATACTGCTTGTGTAATGCCAACAGTTTGTAGAAATTTTCGAAGTGCTCCATAACATCAATATTTTATTATTTTCTATAGAAACACTGGTTAACTTCACAGGTTGTAACAGTTATCCATCGTTACAAATGGATTGTACAGTGCAAGACCTAAATTTTTCCTTTGAAACAGTTTTGTAGTAGGTTAAACAGAAAATTGCAAAATTTCTTAAATTTAAAATGATGAAGGATTTTGGC

Fln Alignment:

Contig324___LQKRIDKLAEYAAKNGPDFEKMIREKQQDNPAYNFLFGAEGHGYYRYKLWLCTRPITANFSHGMGSMNPGLTSMGSLNSPLQTLNPPLNPGLSS--ALNPVLSNSLLGAAPPLHHSGPFPAFYDXXXXXXXXXXXXXXXXXRSDYEPMTRSFKGLSGPLPSDVAAELYNVLNNLTGTKESIKGAKTWFMQRSPFAPALAEALKDRVMALDDAEKQLHIIYLANDILFDSLQRRINPKELDNEALAFQPVLGNMLARIYHNPQNKDANQSRLQKILQFWASKEVYDTETIYSLEGDMLAGPPAPAGSVKESSLQ----EPSVGSSGILQSSTQNPPQWPLDLQRNSQPSTEQEQQDKAIPPVXXXXXXXXXXXXXXXASQIFATNTVSSMQYPSMAQSFHGSLPTPT---PAASQLTPQVPNLSAARXXXXXXXXXXXXXXXXXMVRKMQIGSGVPYSPLSPLDIPTVIPPSTLSSSYILERVSKFFKEIGEVNPLENQSTLSDSIEDD---EREQPSRTGGACIPPPPNLQVDADTGTLPDGSVEHKPGSTSTGRLGLGATADPNEMSQYDDVXXXXXXXXXXXXHTSMSARASAR
F6H1T4_____________LHKRIDKLVEYAAKNGPEFEVMIREKQQDNPAYSFLFGGEGHNYYRYKLWLSTRSSGGPFNSPFPP-----SSIPMMHSPM---NPMMNPSLNAPPAAAAGASASMLGT--PQMHQPPYLPFYDQQQQQHQHPQPFLGHG-RPDFDPSSKSFKGLSGPLPSDVAMELSNVLNNLTGTKESIKGAKIWFMQRSPFAPALAEALRDRVFAVDDSERQLHIIYLANDILFDSLQRRINPHELDNEALAFKPVLGSMLARIYHNPQNKEENQSRLQKILQFWASKEVYDHDTIYGLEGEMIGGPPSNSFSGPHKELSAVPVDPS-AVSGLPQSAHHNIPHWQPEKPCSMPSLLEQEQPDKQMPSL--------AAMPPSLATQQFLPNAVP-------AGPFLGSMPIPSSVQPANQQPALHLPT-AAGLGEKLPPYPLFPPGLIPGMVRKMQIGSGVPYSPMSPLDIPTVIPPSNVSPSEILERVSKFFKEIGEVNPSEGPMEPSDSKDEDDEYERDSPVRKGGACIPPPPNLQVDPETGTYADGSVERKPGSSGSARLGLGATANPNEVSQYDDVYTSYRKQRSTNYHSSMSARAGTR

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
773	25		75		0.996473
1047	75		25		0.996473
1052		25		75	0.996473
1058	75			25	0.996473
1059	75		25		0.996473
1062		25	75		0.996473
1068	20	80			0.995493
1094	20	80			0.995493
1234	83	16			0.994512
1235			83	16	0.994512
1236		16	83		0.994512
1373		85		14	0.993533
1421	87	12			0.992554
1423		87		12	0.992554
1424	87	12			0.992554
1425	87		12		0.992554
1430	87			12	0.992554
1431		87	12		0.992554
1432	87		12		0.992554
1448	87		12		0.992554
1457		12	87		0.992554
1677		10		90	0.90298
1844	88			11	0.999937
1846			10	89	0.999919
2254	12			75	0.975346
2320	50		50		1.0
2339	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain