SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene322

Length: 3057 nt

UniGene Fasta

>sp_v3.0_unigene322
GATGGAAAAAATAGTTTATCCAGGTGGAGAATCCATTTAGGTTTTACTAGTGTAATATCTAGACCTGGCTCGATTTCTAGGTTTGAAACATGTAATCAGTTGACAGAAGGATCGATTTATTGTTTTTAGGATTCCATTTGATTGTTTCTTTCATTATCCTTTTGATTCAGTTTTGTTTCGGTCTGTTTTTAGTTTAGTAAAAGCTACAGTCGTTCTTAAATTCCTTCATTGGTATGAGATTTAGGCGTTTTCAGAGGAAGAATGATTCAGTGAGGATCTATTTTGGTAGAAGGCGTGTTTATTAAGAGAAGTCTTGGTATTTCGTTCTGGATTTGCAGAAAAAACAACGGCCACTGAACGGAATATCAAGACAAGAATTATAAAACTTGCAACAACATAGGAATCTACAAATCCCACCAGCTAAAAAGTAAATCAAAATGGAAAACAAGGATTTAAAGGAGGTGCAATCTCAGGGAAACGTTTCAGTTCCAGATGAGAAATTGACTTCCGAAAAACATGTTGATAGTGAAGACCATAAGAAAAACAGTGTCGAAGAAAAGAGTTCAAATATTGAAAAAGAGAGCACTGCTGTAGAGAAGAATGAAGCTGATAAAGAGGATGGAGCCACCGTCGATCGAACCTTATATGTATGCGATGTTCCAGGAGAAGAAAAAGAAAACGAGCCTGTTTTCTACGGAACTGAAAATCCTGAAGCCGAGATTGGACGATCTCCAGAATCTGATTTCGGCGTGAGAGGCGCTGCTTGGCCGGAAAAGGCTACGGCTCTAAAGAACTTCTTCATGGAGCGCGGCGTCATGATCCGGAAGTTTTCCGAGAAGAGCGGTATTCCGGATGTTATACGTCGTCTTTCCCTTACGAAGAAAGATGAAGCCGATCTAAACGCAGCAGTCGCCGAGGGTAAAAATGCCACCGGAGAAGGCAAAATCTCAGCAGAAGATAAGAAAGAAAATAATGATGGGAAAATTCTCAAGGACTGGAGTGCGTGGAATCCCTTGAATTTGGTTAAGAACAGTTTAGAGAGACAAAATAGTCAGAGCCAGGGTGAACAATTACAAGATTTAGTTGTAGAGCCCGCCTTTAAGGGTAGGATCATTTTGTTTTCATCTTCGGAGAGTCAGCAGTGCCGAGCAGCTAGATCTTTCTTGAGACAAAAGGGCCTCAAATTTATCGAAATTAACATTGACGTTTATCCTGGCAGGAAGGCAGAGCTAGAAAGAATAACAGGTTCTTCATCTGTTCCTAAGATTTTCTTCAATGAATCGTGCTTGGGAGGGATGAATGAGGTTAGAGCCATGGAAGAGTCTGGCGAATTCGATCAAAAGATCAAAGTATTGATTGAAACCGAGGCTCCTCCTACGGCCCCTTTGCCACCATCTGCAGGGGAAGATGATTTCGGAAACAATGGGATGGTGGATGAGTTTGCTAATGTTGTCACAAAACTCAGGGAGGCAGTGGTTGTCAAGGATAGGTTTTATAAAATGCGGATGTTCTCCAAGTGCTTTGTTGGATCGGAAGCAGTGGATTTCTTGTCAGAGGATCAGTTGCTGGAGAGGGATGAGGCAGTCGAATTCGGAAGAAAACTTGCCTCAAAACACTTTTTCCACCATGTTCTAGATGAGAATGTCTTCGAAGATGGAAATCATCCTTATCGTTTCATGGAACACGATCCAGTTGTTACCGCCAAGTGCTATAATTTTACAGGATGTACAAATGACATGAAGCCCAAACCCCCAACTGAAATTGCAGCTAGACTGCGGAGCTTGACCCAAGCAATTTATGAAGCTTATATCTCTGATGATGGCAAGCATGTAGATTACAGAAGCATTCGTGGCAGTGAGGAGTTTATAAGGTACTTGAAAGTGATTGAGGAACTTCACAGAATTGATTTGCATGACTTATCCAGAGAAGAAAAACTTGCATTCTTCATCAATCTATATAATATGATGGCAATTCATGCAATTGTGCTGTGGGGTTACCCTGATGGACCTCTCGAGCGGAGAAGATTTTTTGGTGATTTTAAATATCTCATTGGTGGCTATTCTTATTCACTCTCGGCCATTCAAAATGGGGTTTTGCGTGGCAACAAAAGACCTCCTTACAATTTGATAAAGCCTTTTGGGTTAAAAGACAAGCGCATCGAGGTTGCTTTGCGAGATCCAGAACCTTTGGTTCATTTTTCCTTAGTGTCTGGTTCAAGATCAAGCCCTGCCATCAGATGCTATTCACCAGGAAGTATTGATGAAGAATTAAGGCTAGCTGGAAGGATATTTTTTGACGATGGTGGTTTTTTGATTGATGGGGAGAACAAGCTTGCTTCAGTTAGCAAGATTTTGAATTGGTACAGTGTGGACTTTGGTAAAAACGAAACAGAAGTCTTGAAATTTGTTGCAAACTATCTGGAGCCCTCCAAGTCAGAACAGCTATTGGAATTATTGAATAGTAATCAGCTGAAGGTCACATACCAGAATTATGATTGGGCTTTGAATTGCTAAGTCTAATGTTATCTGTCATGCTCTCAATCAATTCAGTTCATAGTCATCTATCAAATGGGAGCTGTATCCTAAGTTTAATGGGTTAGAAGCTAAATTAGTATTAAAATTTGAAATTTTGCTGATGGTAAGTTGAGATAGAAGATCAAAAGATCTGCTGCCTAAGTCTTTTATGCCAAGTCTTGTGAATAAGTAAGCAACACGGACCTTCATTCATGTTTTTGAAGCTCTAGAAAGTATGTGGTTCAAGCCCTTACAGGCTATAAGGCAAATGTGGCATGCCATTTCAGTATGTTATTTGTTTGCCGATTTATTAAAATATATTCGATGGCTTCTTGTTATTTGAACTGAGTCAATTTCTTGCACTTGAACTTCTATTCCTCTCCCCCTTGGGAAATTGTAAGAAGGATCTTGTTCCTATGTAGTTGCATTTATGTTAGAAGGAACATGGTCCTTACATGATTTTCATGTAGATGCGTTAATTTCAAAGCTATGATGGTATTGCTTCGATTATTTCAAAGCTAAATGGGAAAGTTATTTTGTTATA

Ace file of the UniGene sp_v3.0_unigene322

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutaredoxin-related-like protein n=3 Tax=Oryza sativa RepID=Q67UI1_ORYSJ	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Sma3	Electron transporter, putative	-	-	7.96e-07	-

Source	Gene names
Sma3	AT4g08550; At3g11920; At4g08550; F26K24.21; GSVIVT00015289001; GSVIVT00021266001; LOC_Os10g34170; OSJNBa0012L23.48; Os06g0224200; Os10g0482900; OsI_22215; OsI_34070; OsJ_20649; OsJ_31926; P0638H11.29; POPTRDRAFT_566346; POPTRDRAFT_643701; POPTRDRAFT_76628

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	-
Sma3		GO:0007242	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DEP domain	IPR000591	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Domain of unknown function DUF547	IPR006869	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012335	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315821.1	predicted protein [Populus trichocarpa]	0.0	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS42

Fln msg: your sequence is longer than subject: 692 - 648

Fln protein: MENKDLKEVQSQGNVSVPDEKLTSEKHVDSEDHKKNSVEEKSSNIEKESTAVEKNEADKEDGATVDRTLYVCDVPGEEKENEPVFYGTENPEAEIGRSPESDFGVRGAAWPEKATALKNFFMERGVMIRKFSEKSGIPDVIRRLSLTKKDEADLNAAVAEGKNATGEGKISAEDKKENNDGKILKDWSAWNPLNLVKNSLERQNSQSQGEQLQDLVVEPAFKGRIILFSSSESQQCRAARSFLRQKGLKFIEINIDVYPGRKAELERITGSSSVPKIFFNESCLGGMNEVRAMEESGEFDQKIKVLIETEAPPTAPLPPSAGEDDFGNNGMVDEFANVVTKLREAVVVKDRFYKMRMFSKCFVGSEAVDFLSEDQLLERDEAVEFGRKLASKHFFHHVLDENVFEDGNHPYRFMEHDPVVTAKCYNFTGCTNDMKPKPPTEIAARLRSLTQAIYEAYISDDGKHVDYRSIRGSEEFIRYLKVIEELHRIDLHDLSREEKLAFFINLYNMMAIHAIVLWGYPDGPLERRRFFGDFKYLIGGYSYSLSAIQNGVLRGNKRPPYNLIKPFGLKDKRIEVALRDPEPLVHFSLVSGSRSSPAIRCYSPGSIDEELRLAGRIFFDDGGFLIDGENKLASVSKILNWYSVDFGKNETEVLKFVANYLEPSKSEQLLELLNSNQLKVTYQNYDWALNC*

Protein Length: 693

Fln nts: GATGGAAAAAATAGTTTATCCAGGTGGAGAATCCATTTAGGTTTTACTAGTGTAATATCTAGACCTGGCTCGATTTCTAGGTTTGAAACATGTAATCAGTTGACAGAAGGATCGATTTATTGTTTTTAGGATTCCATTTGATTGTTTCTTTCATTATCCTTTTGATTCAGTTTTGTTTCGGTCTGTTTTTAGTTTAGTAAAAGCTACAGTCGTTCTTAAATTCCTTCATTGGTATGAGATTTAGGCGTTTTCAGAGGAAGAATGATTCAGTGAGGATCTATTTTGGTAGAAGGCGTGTTTATTAAGAGAAGTCTTGGTATTTCGTTCTGGATTTGCAGAAAAAACAACGGCCACTGAACGGAATATCAAGACAAGAATTATAAAACTTGCAACAACATAGGAATCTACAAATCCCACCAGCTAAAAAGTAAATCAAA_-_ATGGAAAACAAGGATTTAAAGGAGGTGCAATCTCAGGGAAACGTTTCAGTTCCAGATGAGAAATTGACTTCCGAAAAACATGTTGATAGTGAAGACCATAAGAAAAACAGTGTCGAAGAAAAGAGTTCAAATATTGAAAAAGAGAGCACTGCTGTAGAGAAGAATGAAGCTGATAAAGAGGATGGAGCCACCGTCGATCGAACCTTATATGTATGCGATGTTCCAGGAGAAGAAAAAGAAAACGAGCCTGTTTTCTACGGAACTGAAAATCCTGAAGCCGAGATTGGACGATCTCCAGAATCTGATTTCGGCGTGAGAGGCGCTGCTTGGCCGGAAAAGGCTACGGCTCTAAAGAACTTCTTCATGGAGCGCGGCGTCATGATCCGGAAGTTTTCCGAGAAGAGCGGTATTCCGGATGTTATACGTCGTCTTTCCCTTACGAAGAAAGATGAAGCCGATCTAAACGCAGCAGTCGCCGAGGGTAAAAATGCCACCGGAGAAGGCAAAATCTCAGCAGAAGATAAGAAAGAAAATAATGATGGGAAAATTCTCAAGGACTGGAGTGCGTGGAATCCCTTGAATTTGGTTAAGAACAGTTTAGAGAGACAAAATAGTCAGAGCCAGGGTGAACAATTACAAGATTTAGTTGTAGAGCCCGCCTTTAAGGGTAGGATCATTTTGTTTTCATCTTCGGAGAGTCAGCAGTGCCGAGCAGCTAGATCTTTCTTGAGACAAAAGGGCCTCAAATTTATCGAAATTAACATTGACGTTTATCCTGGCAGGAAGGCAGAGCTAGAAAGAATAACAGGTTCTTCATCTGTTCCTAAGATTTTCTTCAATGAATCGTGCTTGGGAGGGATGAATGAGGTTAGAGCCATGGAAGAGTCTGGCGAATTCGATCAAAAGATCAAAGTATTGATTGAAACCGAGGCTCCTCCTACGGCCCCTTTGCCACCATCTGCAGGGGAAGATGATTTCGGAAACAATGGGATGGTGGATGAGTTTGCTAATGTTGTCACAAAACTCAGGGAGGCAGTGGTTGTCAAGGATAGGTTTTATAAAATGCGGATGTTCTCCAAGTGCTTTGTTGGATCGGAAGCAGTGGATTTCTTGTCAGAGGATCAGTTGCTGGAGAGGGATGAGGCAGTCGAATTCGGAAGAAAACTTGCCTCAAAACACTTTTTCCACCATGTTCTAGATGAGAATGTCTTCGAAGATGGAAATCATCCTTATCGTTTCATGGAACACGATCCAGTTGTTACCGCCAAGTGCTATAATTTTACAGGATGTACAAATGACATGAAGCCCAAACCCCCAACTGAAATTGCAGCTAGACTGCGGAGCTTGACCCAAGCAATTTATGAAGCTTATATCTCTGATGATGGCAAGCATGTAGATTACAGAAGCATTCGTGGCAGTGAGGAGTTTATAAGGTACTTGAAAGTGATTGAGGAACTTCACAGAATTGATTTGCATGACTTATCCAGAGAAGAAAAACTTGCATTCTTCATCAATCTATATAATATGATGGCAATTCATGCAATTGTGCTGTGGGGTTACCCTGATGGACCTCTCGAGCGGAGAAGATTTTTTGGTGATTTTAAATATCTCATTGGTGGCTATTCTTATTCACTCTCGGCCATTCAAAATGGGGTTTTGCGTGGCAACAAAAGACCTCCTTACAATTTGATAAAGCCTTTTGGGTTAAAAGACAAGCGCATCGAGGTTGCTTTGCGAGATCCAGAACCTTTGGTTCATTTTTCCTTAGTGTCTGGTTCAAGATCAAGCCCTGCCATCAGATGCTATTCACCAGGAAGTATTGATGAAGAATTAAGGCTAGCTGGAAGGATATTTTTTGACGATGGTGGTTTTTTGATTGATGGGGAGAACAAGCTTGCTTCAGTTAGCAAGATTTTGAATTGGTACAGTGTGGACTTTGGTAAAAACGAAACAGAAGTCTTGAAATTTGTTGCAAACTATCTGGAGCCCTCCAAGTCAGAACAGCTATTGGAATTATTGAATAGTAATCAGCTGAAGGTCACATACCAGAATTATGATTGGGCTTTGAATTGCTAA___GTCTAATGTTATCTGTCATGCTCTCAATCAATTCAGTTCATAGTCATCTATCAAATGGGAGCTGTATCCTAAGTTTAATGGGTTAGAAGCTAAATTAGTATTAAAATTTGAAATTTTGCTGATGGTAAGTTGAGATAGAAGATCAAAAGATCTGCTGCCTAAGTCTTTTATGCCAAGTCTTGTGAATAAGTAAGCAACACGGACCTTCATTCATGTTTTTGAAGCTCTAGAAAGTATGTGGTTCAAGCCCTTACAGGCTATAAGGCAAATGTGGCATGCCATTTCAGTATGTTATTTGTTTGCCGATTTATTAAAATATATTCGATGGCTTCTTGTTATTTGAACTGAGTCAATTTCTTGCACTTGAACTTCTATTCCTCTCCCCCTTGGGAAATTGTAAGAAGGATCTTGTTCCTATGTAGTTGCATTTATGTTAGAAGGAACATGGTCCTTACATGATTTTCATGTAGATGCGTTAATTTCAAAGCTATGATGGTATTGCTTCGATTATTTCAAAGCTAAATGGGAAAGTTATTTTGTTATA

Fln Alignment:

Contig322___YLKVIEELHRIDLHDLSREEKLAFFINLYNMMAIHAIVLWGYPDGPLERRRFFGDFKYLIGGYSYSLSAIQNGVLRGNKRPPYNLIKPF---GLKDKRIEV--------ALRDPEPLVHFSLVSGSRSSPAIRCYSPGSIDEELRLAGRIF
B8LS42_____________FRSMVEHLERIDPSQLQRESKLAFWINVHNALVMHAYLAYGIPRNILKRMPLFQKAAYNIGGHSVSANTIEHSILCCKTYRPAQWLETLLSTGARIKAGEVRRTFGRRYGLDDPEPLVFFALCGGAHSDPAVRIYTAKNVHDELETAKKEF

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
1092	16		83		0.994512
1093		83		16	0.994512
1094		83	16		0.994512
1095		83		16	0.994512
1180		83		16	0.994512
1197		16		83	0.994512
1231	14	85			0.993533
1233	83		16		0.994512
1251	12			87	0.992554
1252	12			87	0.992554
1253		87		12	0.992554
1254	85		14		0.993533
1467			88	11	0.923564
1468			87	12	0.992554
1469	87	12			0.992554
1470			87	12	0.992554
1472		87	12		0.992554
1626	11	88			0.923564
1756	85		14		0.993533
1797	16			83	0.994512
1798		16		83	0.994512
1801			83	16	0.994512
1978	14		85		0.993533
2002	20		80		0.995493
2187	11			88	0.923564
2188	11			88	0.923564
2191			88	11	0.923564
2267	90		10		0.90298
2286	12		87		0.992554
2298		87		12	0.992554
2964		12		87	0.992554
2979		87		12	0.992554
2990	20		80		0.995493
3004		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain