SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene315

Length: 2996 nt

UniGene Fasta

>sp_v3.0_unigene315
CATTGCTGATGAAGATGCTAACTATTTACAAGAAGCATGGGAGCACATTTTAACATGTGTTTCACGTTTTGAGCATTTGCACCTGCTAGGGGAGGGTGCTCCTCCAGATGCTACATTTTTTGCAGTACCTCAGAATGAATCAGAGAAGATAAAGCAACCCAAATCACCCATTCTTCCAGTTCTCAAAAAGAAGGGGCCTGGCCGGTTGCAATATGCAGCTGCAGCTGCTCGACGGGGATCATATGATAGTGCTGGTGTTGGGGGTCATGCTTCAGGAGTGGTTACAACTGAGCAGATGAACAATTTGGTTACCAATTTAAACATGCTTGAACAGATTGGCAGCTCTGAAATGAATCGCATATTCACACGAAGCCAAAGGTTGAACAGTGAGGCAATCGTTGATTTTGTAAAGGCACTTTGTAAAGTTTCTATGGAGGAGCTACGGTCCCCAACTGATCCTCGGGTTTTTAGCCTTACTAAAATTGTTGAGATTGCGCACTATAACATGAACCGCATTAGGCTAATTTGGTCTCGCATTTGGAGTGTGCTTTCTGATTTCTTCGTTACAATTGGATGTTCTGAAAATTTATCCATCGCTATTTTTGCAATGGATTCCCTACGACAACTTGCTATGAAGTTCCTAGAACGTGAGGAGTTGGTGAATTACAACTTCCAGAATGAATTTATGAAACCATTTGTTATTGTAATGCGGAAGAGCAGCTCTGTAGAAATTAGAGAACTAATCATTCGATGTGTTTCTCAAATGGTTTTTGCTCGTGTAAATCATGTGAAGTCAGGTTGGAAAATCATCTTCATGGTGTTCACAACAGCAGCCTATGATGATCACAAGAATATTGTACTCTTAGCATTTGAAACAATTGAAAAAATAGTGCGGGACTATTTTCCTTACATAACTGAAACAGAGACGACAACATTCACAGATTGTGTGAACTGTTTGATTGCATTTACAAATAGCAGATTCAACAAGGATGTTAGTTTGAATGCAATTGCATTTCTTCGGTTTTGTGCTCTAAAACTTGCAGAGGGTGAACTTGGCTCTTCTGCAAAGAACAAGGAAAAGGGGAAGCCACTTTCTCCATCAACTGGTGCGGGAAAGGATGGAAAGCCAGTCAGTCCAACTTTCACTGATAAAGATGATCATTTGTATTTCTGGTTCCCTTTATTGGCAGGATTATCTGAACTTTCATTTGATCCCAGGCCAGATATCAGAAAAAGTGCTTTGCAAGTGCTTTTTGACACACTTCGCAATCATGGGCATTTGTTCTCCCCTGCTCTATGGGAGCGTGTGTATGACTCAGTTCTTTTTCCCTTATTTGATTATGTTAGACATGCCATTGATCCTTCAGGACGGAGGGTACATGGGGATGATCTGGAAGACGAACTCAATGATACTGAAGAAGATGCTTGGCTTTATGAAACATGCACATTGGCCCTGCAACTTGCAGTAGACCTCTTTGTCAAGTTCTATGATTCAGTAAACCCTCTACTAAAGAAAGTACTGACACTTTTAATTAGTTTTATAAAGCGGCCCCATCAAAGCTTGGCTGGCATTGGCGTAGCTGCTTTTGTTCGTTTGATGAGCAATGCTGGAGATCTTTTTTCTGATGAGAGATGGCAAGAAGTTGTATTATCATTAAAGGAAGCAGTTGCTGACACACTGCCAGATTTTGTGAAGATTATTCATGGCATGGACGATATTGATACGGCAGGAACCACAGAAGAGCATAATACAACAGCTGATACTTCAATCTCCAATGAAGAAATGGAAGCACAAGGACTAAACAAGTTACAGCTTCTAATCACTGATGCCAAATGTCGTACAGCAGTGCAACTTCTTCTAATTCAGTCTATTATGGAGGTCTATAATATGCACAGAGAACAGCTGTCAGCAGCTAACACGATGGTACTTGTGGAGTCCCTTCATTCTATTGGAACCCATGCACATGGAATAAATAGTGATCATGCTCTTCGGTCAAAGCTTCAAGAACTTGGTACCATATCACAAATGCCAGATCCCCCTCTACTGCGACTGGAGAGCGAGTCCTACCAGGCCTCCCTGAATTTGCTGCAGAACTTGATAGTTGATAAATCTATACATAATAAAGAGGTTGAAATAGAGGCCCGTCTTGTAGAATTGTGTGAAGAAGTTTTGCTTGTATATTTAGAAACTGCGAGCACTGGAGCACTTCCTGAATCTCATAGTCAACAGTCAAAGCCAGATTGGATAATACCATTAGGTTCTACAAAGAGGAGGGAATTAGCCTCACGTGCTCCTTTAGTCGTTGCCACTTTACAAGCTATTAGTGGATTGAAGGACTCTTCATTTGAGAGATCCTTATCTCGATTTTTTCCACTCATGGCAAATTTAATCAGTTGTGAACATGGGTCAGGAGAAGTGCAACTAGCCTTGAGTGACATGTTGAGTTCTTGGGTGGGCCCAATTTTGCTTAAAGCTTGATGGATATCTATAACAAGTAAGCATTTGTACCACTAGTGTTGAATCAGTTAGGTGGGGAATTGATGGTTATTCTCAACTTAGTTTTAAATTCTGAAGAGGATTTGGCTATTGATAAGCATTTTTCTTGGCCATATGGTACATACTAGAGGATTGCAGGCAGCTCCTGACTATACCTGATATTTGTTTCAGATTGTGTTGAGCTATTTGGATCAGGAGTCAACAAATTGGATCTTTGAGTCCATCATTTTCGTGTATGATAGTTCTCATTTTTGCACATTTTAAAGTTGCATGTAATTTTGTTTTATGTTTTTGTTGCTCTCTCAGTAGATCGTATTTGTGAATCCGATTAATATGGAATTGCAATTCGGTCGTAGTAAATGAGAGTCTGCTGTAGGGTTACTGAATGTTTATTCTTTGTACTCCATCTTGGGTATAGGCTGAACGGTTATTGAATCTTCTCAAGTATCCATCACTATTTTCTCAATGGATTTCGCTTTACTTGCATAAGATCTTCGCA

Ace file of the UniGene sp_v3.0_unigene315

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1981 domain containing protein	-	-	7.0e-32	51%
FL-Next	sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	22%
Sma3	Putative guanine nucleotide-exchange protein GEP2	-	-	1.103e-12	-

Source	Gene names
Sma3	AT4g35380; AT4g38200; At1g01960; At4g38200; CHLREDRAFT_148829; F20D10.320; F22M8.9; F23E12.60; GEP2; GSVIVT00016348001; GSVIVT00026361001; GSVIVT00036299001; LOC_Os03g14260; OJ1112_E08.120; OJ1773_H01.101; OSTLU_36947; Os03g0246800; Os06g0622800; OsI_0621

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	ARF guanyl-nucleotide exchange factor activity	GO:0005086	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	megagametogenesis	GO:0009561	Biological Process	-
Sma3	regulation of ARF protein signal transduction	GO:0032012	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	SEC7-like	IPR000904	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Domain of unknown function DUF1981, SEC7 associated	IPR015403	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G60860.1	SEC7-like guanine nucleotide exchange family protein chr3:22484804-22491510 FORWARD LENGTH=1793	67%
RefSeq	Arabidopsis thaliana	NP_191645.1	SEC7-like guanine nucleotide exchange family protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002320064.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q42510

Fln msg: your sequence is shorter than subject: 826 - 1451

Fln protein: IADEDANYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAVPQNESEKIKQPKSPILPVLKKKGPGRLQYAAAAARRGSYDSAGVGGHASGVVTTEQMNNLVTNLNMLEQIGSSEMNRIFTRSQRLNSEAIVDFVKALCKVSMEELRSPTDPRVFSLTKIVEIAHYNMNRIRLIWSRIWSVLSDFFVTIGCSENLSIAIFAMDSLRQLAMKFLEREELVNYNFQNEFMKPFVIVMRKSSSVEIRELIIRCVSQMVFARVNHVKSGWKIIFMVFTTAAYDDHKNIVLLAFETIEKIVRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDVSLNAIAFLRFCALKLAEGELGSSAKNKEKGKPLSPSTGAGKDGKPVSPTFTDKDDHLYFWFPLLAGLSELSFDPRPDIRKSALQVLFDTLRNHGHLFSPALWERVYDSVLFPLFDYVRHAIDPSGRRVHGDDLEDELNDTEEDAWLYETCTLALQLAVDLFVKFYDSVNPLLKKVLTLLISFIKRPHQSLAGIGVAAFVRLMSNAGDLFSDERWQEVVLSLKEAVADTLPDFVKIIHGMDDIDTAGTTEEHNTTADTSISNEEMEAQGLNKLQLLITDAKCRTAVQLLLIQSIMEVYNMHREQLSAANTMVLVESLHSIGTHAHGINSDHALRSKLQELGTISQMPDPPLLRLESESYQASLNLLQNLIVDKSIHNKEVEIEARLVELCEEVLLVYLETASTGALPESHSQQSKPDWIIPLGSTKRRELASRAPLVVATLQAISGLKDSSFERSLSRFFPLMANLISCEHGSGEVQLALSDMLSSWVGPILLKA*

Protein Length: 827

Fln nts: CATTGCTGATGAAGATGCTAACTATTTACAAGAAGCATGGGAGCACATTTTAACATGTGTTTCACGTTTTGAGCATTTGCACCTGCTAGGGGAGGGTGCTCCTCCAGATGCTACATTTTTTGCAGTACCTCAGAATGAATCAGAGAAGATAAAGCAACCCAAATCACCCATTCTTCCAGTTCTCAAAAAGAAGGGGCCTGGCCGGTTGCAATATGCAGCTGCAGCTGCTCGACGGGGATCATATGATAGTGCTGGTGTTGGGGGTCATGCTTCAGGAGTGGTTACAACTGAGCAGATGAACAATTTGGTTACCAATTTAAACATGCTTGAACAGATTGGCAGCTCTGAAATGAATCGCATATTCACACGAAGCCAAAGGTTGAACAGTGAGGCAATCGTTGATTTTGTAAAGGCACTTTGTAAAGTTTCTATGGAGGAGCTACGGTCCCCAACTGATCCTCGGGTTTTTAGCCTTACTAAAATTGTTGAGATTGCGCACTATAACATGAACCGCATTAGGCTAATTTGGTCTCGCATTTGGAGTGTGCTTTCTGATTTCTTCGTTACAATTGGATGTTCTGAAAATTTATCCATCGCTATTTTTGCAATGGATTCCCTACGACAACTTGCTATGAAGTTCCTAGAACGTGAGGAGTTGGTGAATTACAACTTCCAGAATGAATTTATGAAACCATTTGTTATTGTAATGCGGAAGAGCAGCTCTGTAGAAATTAGAGAACTAATCATTCGATGTGTTTCTCAAATGGTTTTTGCTCGTGTAAATCATGTGAAGTCAGGTTGGAAAATCATCTTCATGGTGTTCACAACAGCAGCCTATGATGATCACAAGAATATTGTACTCTTAGCATTTGAAACAATTGAAAAAATAGTGCGGGACTATTTTCCTTACATAACTGAAACAGAGACGACAACATTCACAGATTGTGTGAACTGTTTGATTGCATTTACAAATAGCAGATTCAACAAGGATGTTAGTTTGAATGCAATTGCATTTCTTCGGTTTTGTGCTCTAAAACTTGCAGAGGGTGAACTTGGCTCTTCTGCAAAGAACAAGGAAAAGGGGAAGCCACTTTCTCCATCAACTGGTGCGGGAAAGGATGGAAAGCCAGTCAGTCCAACTTTCACTGATAAAGATGATCATTTGTATTTCTGGTTCCCTTTATTGGCAGGATTATCTGAACTTTCATTTGATCCCAGGCCAGATATCAGAAAAAGTGCTTTGCAAGTGCTTTTTGACACACTTCGCAATCATGGGCATTTGTTCTCCCCTGCTCTATGGGAGCGTGTGTATGACTCAGTTCTTTTTCCCTTATTTGATTATGTTAGACATGCCATTGATCCTTCAGGACGGAGGGTACATGGGGATGATCTGGAAGACGAACTCAATGATACTGAAGAAGATGCTTGGCTTTATGAAACATGCACATTGGCCCTGCAACTTGCAGTAGACCTCTTTGTCAAGTTCTATGATTCAGTAAACCCTCTACTAAAGAAAGTACTGACACTTTTAATTAGTTTTATAAAGCGGCCCCATCAAAGCTTGGCTGGCATTGGCGTAGCTGCTTTTGTTCGTTTGATGAGCAATGCTGGAGATCTTTTTTCTGATGAGAGATGGCAAGAAGTTGTATTATCATTAAAGGAAGCAGTTGCTGACACACTGCCAGATTTTGTGAAGATTATTCATGGCATGGACGATATTGATACGGCAGGAACCACAGAAGAGCATAATACAACAGCTGATACTTCAATCTCCAATGAAGAAATGGAAGCACAAGGACTAAACAAGTTACAGCTTCTAATCACTGATGCCAAATGTCGTACAGCAGTGCAACTTCTTCTAATTCAGTCTATTATGGAGGTCTATAATATGCACAGAGAACAGCTGTCAGCAGCTAACACGATGGTACTTGTGGAGTCCCTTCATTCTATTGGAACCCATGCACATGGAATAAATAGTGATCATGCTCTTCGGTCAAAGCTTCAAGAACTTGGTACCATATCACAAATGCCAGATCCCCCTCTACTGCGACTGGAGAGCGAGTCCTACCAGGCCTCCCTGAATTTGCTGCAGAACTTGATAGTTGATAAATCTATACATAATAAAGAGGTTGAAATAGAGGCCCGTCTTGTAGAATTGTGTGAAGAAGTTTTGCTTGTATATTTAGAAACTGCGAGCACTGGAGCACTTCCTGAATCTCATAGTCAACAGTCAAAGCCAGATTGGATAATACCATTAGGTTCTACAAAGAGGAGGGAATTAGCCTCACGTGCTCCTTTAGTCGTTGCCACTTTACAAGCTATTAGTGGATTGAAGGACTCTTCATTTGAGAGATCCTTATCTCGATTTTTTCCACTCATGGCAAATTTAATCAGTTGTGAACATGGGTCAGGAGAAGTGCAACTAGCCTTGAGTGACATGTTGAGTTCTTGGGTGGGCCCAATTTTGCTTAAAGCTTGA___TGGATATCTATAACAAGTAAGCATTTGTACCACTAGTGTTGAATCAGTTAGGTGGGGAATTGATGGTTATTCTCAACTTAGTTTTAAATTCTGAAGAGGATTTGGCTATTGATAAGCATTTTTCTTGGCCATATGGTACATACTAGAGGATTGCAGGCAGCTCCTGACTATACCTGATATTTGTTTCAGATTGTGTTGAGCTATTTGGATCAGGAGTCAACAAATTGGATCTTTGAGTCCATCATTTTCGTGTATGATAGTTCTCATTTTTGCACATTTTAAAGTTGCATGTAATTTTGTTTTATGTTTTTGTTGCTCTCTCAGTAGATCGTATTTGTGAATCCGATTAATATGGAATTGCAATTCGGTCGTAGTAAATGAGAGTCTGCTGTAGGGTTACTGAATGTTTATTCTTTGTACTCCATCTTGGGTATAGGCTGAACGGTTATTGAATCTTCTCAAGTATCCATCACTATTTTCTCAATGGATTTCGCTTTACTTGCATAAGATCTTCGCA

Fln Alignment:

Contig315___IADEDANYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAVPQNESEKIKQPKSPILPVLKKKGPGRLQYAAAAARRGSYDXXXXXXXXXXXXTTEQMNNLVTNLNMLEQIGSSEMNRIFTRSQRLNSEAIVDFVKALCKVSMEELRSPTDPR-----VFSLTKIVEIAHYNMNRIRLIWSRIWSVLSDFFVTIGCSENL-SIAIFAMDSLRQLAMKFLEREELVNYNFQNEFMKPFVIVMRKSSSV--EIRELIIRCVSQMVFARVNHVKS--GWKIIFMVFTTAAYDDHKNIVLLAFETIEKIVRD---YFP--YIXXXXXXXXXDCVNCLIAFTNSRFNKDVSLNAIAFLRFCALKLAEGELGSSAKNKEKGKPLSPSTGAGKDGKPVSPTFTDKDDHLYFWFPLLAGLSELSFDPRPDIRKSALQVLFDTLRN-HGHLFSPALWERVYDSVLFPLFD
Q42510_____________IANKYGDYIRTGWRNILDCILRLHKLGLLPARVASDAADESEHSSEQGQGK-PLANSLSSAHLQSMGTPRRSSGLMGRFSQLLSLDTEEPRSQPTEQQ---LAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALIWAAGRPQKGTSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIATIAQSTVMPCNLVDKAIFGLLRICQRLLPYKE-------SLADELLRSLQLVLKLDARVADAYCEQIAIEVSRLVKANANHIRSQAGWRTITSLLSITA--RHPEASESGFDAVSFVMSEGTHLYPANYVL---------CVDAARQFAESRVGQ--SERSIR-----ALDLMGDSLEFLAKWALSAKENMGEEDFGKMSQDIGE----------MWLRLVQGLRKVCLDQREDVRNHALQSLQKCLGGVDGINLAHSMWSQCFDKVIFTVLD

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
990	75			25	0.996473
991			75	25	0.996473
1071	75			25	0.996473
1133	11		88		0.923564
1135		88		11	0.923564
1147		88		11	0.923564
1157		11	88		0.923564
1160			88	11	0.923564
1217		83		16	0.994512
1261	16	83			0.994512
1262	83			16	0.994512
1263		83	16		0.994512
1264	66		16	16	0.988813
1285	16		83		0.994512
1286	16			83	0.994512
1288		83	16		0.994512
1345		20		80	0.995493
1346	20		80		0.995493
1430	25			75	0.996473
1431	25		75		0.996473
1432			75	25	0.996473
1433		75	25		0.996473
1499	33		66		0.997452
1501	66			33	0.997452
1946		66		33	0.997452
2026		16		83	0.994512
2274	90			10	0.90298
2275	90			10	0.90298
2326		83		16	0.999991
2653	90			10	0.999898
2853			80	20	0.995493
2979	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain