SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene313

Length: 2955 nt

UniGene Fasta

>sp_v3.0_unigene313
GACGAGCGGAAAGTATTTATAGCATCGGGCACAACTTCTACTCTGGCTTGGAGCAGGGCTCCTGCATCTTGGACCATAACTCTTGCGTTGTGCAGTTTGGAAACAAGAGGAAGATGGGAGCTGGAAGAAGAACTCAAACTTTCACTTTCAATGATAATAATGGCAAAGGAGGAACAAGTCCATATTCTCCGGGGGGTGGGGCTGGAAATTTCAGAGCCCTTAAGAAATCTGATCTGGCGGCGGTTATTTTTGGCTGCTCCCACCAAACATTTAAGGAATGCGTTACTCAATTGATATTCGGGTTGCCTGCACCTCACTTTACATATGTGCAAAATATTTCCCCTGGCATGCCATTGTTCCTTTTTAACTACAGTGATAGAAAGATGCACGGTGCTTTTGAAGCAGCAAGCCATGGAAAGATGAATATCAATCCATATGCATGGACAGATGGGTCGGAGAAGACCCAGTTTCCTGCGCAGGTTCGTGTTTATATCAAGCAGCACAGTGAGCCTCTTGCGGAAGCTATTTTCAGAAAAGCCATCAATGCAAATTATTACACCAATACACATTTTTGGTTTGAGTTAAACCATGCTCAGACTGAAGCATTGCTGGCTATTTTTGTTACCAAACCCAAAAAGTACAGTGAAATAGGTTCCCCAAAAGTTGCAGAGAATGGATCATGGTATTCTAAAAGAGATCTTAGTTCTTCCAATGGCTGGCCAACTCGCTCTGCTCCTTTGAGAACATCACCAAGCTCTAGAGAAGTGGCTTCAGAGGTGAGTAGTTCAGGAGAATCGTCTCTGTTGTCAAAAAAGTACGAGGAACTGTCTCATCGAGAAGAGGATTCATGGCAACTAAATAGTCGATCATTTTCAAAGAACAAGGGAAAGTGCAAAGGCGCGACTTCTAGCAGTTGTTCATCATATGAACAAAGCTTCGATGGTTCCAGAAGAACTAATTCAGAGGATGAATTGACTGCAATGGATGAGATGCTTAAAAGTTCACATATCGTACCCAAACAAGAACCTGAATCAACTGGCAGAGAATCAGATTTATGTCAACCAGTCATCATTTCAAAAGAAAATCTTGAGCTTAATGTGCTAGAGAAGTTGAAGCACTTGGCTATTGATCGTCAAAGAATGTCAAATAATCCTACACCAGATCTGGGTGTAAACAATGACAATGTGATTTGCAACATTAAGAATGGCATGGAGAAATCAACACACAGGAAACTTCTTCAGAGTCAAGCAACATTGGAAAGAGAGAAAGAAAGACTTTTATCCAACTTGACTTGCATGGATGTATCCATAATGGAGCCTTTGCAAAAGTATATGGATCTCCAAGGTTCAATTATAGCACAGATGCAACAAGAATTAACGGAGTTGAGATATTTTGTGGAGAAAACTCGTAATGAGTTTCAGAATACACTTGAGATCCAGGAGCTTCAAAACAAAAATACAATTTTGGAGCAGAAACAGGTTGAAATGGACTCAGAAATCCAGATTCTGAAGGAGCAATTTACGGAACTCAAGGAGTCATTGCCAGGAAGGAACATAGACACATTTGGAGATAAATTAACTGAAATATCTAATGATGAACAATCCAAATATTCTGAGTGTTCAATCTATCTTCTAGGGGGGCATGATGGATGTTCATGGTTGGGGACACTAGATGCATATTTACCGGACACAAATATCATCAAACACATCGCGGAAGCACCCACTACTCGCTCATATGCTGCAGCAACTATTCTGGATGGAAGCATATATATTTTTGGTGGGGGAAATGGAATTCTATGGCACAACAGTGTTGAACAGTATAACCCAAACAGTGGATTATGGACAACATGTCCTTCAATGGGTTTTCAAAGAGGCAGCTTAGCAGGAGCTTGTCTAGATAACAAAATTTTTGCAATGGGAGGTGGCAATGGGGCAGAATATTTTTCTGAAGTGGAGATGTATGATCCATATCTTGGCAAATGGTTACCCTATGGAACCATGCTTCAAAAACGCTTTGCTTTAGCAGGAACGGTTCTGGGTGGAGCGTTATATGCTCTGGGTGGTTTTGATGGCAAGCAATACTTGAAGTCAGTTGAAAGATTTGATCCACGTGAGGCTCAATGGATCCAACTTGAAGAAATGAGTGCCAAGAGAGGAAGCTTGTCAGCTGCAGTATTAAATGAAAAGCTCTATGCAATCGGGGGTTTTGACGGCTCAAAACTTTTGTCTAGTGTGGAAGTTTTTGATCCTCGTGCAGGTTCCTGGCTCATGGTTGATTCAATATCTAGTCCACGGGCTTATGGGGCCGCGGCAGTTCTTGGAGATTCTGTCTATATGATTGGTGGCCTTGGAGAAATCGATTATGTCGACTCTGTTGAAACTTATCAGGATGGTGTTGGTTGGAAAGTCAGTTCACAAGCTATTGGCAAACGATCATTCCTAACTGCAGTTGTTTTATAGTTCTATATAGATATGGCAGGATACACTCTCTTTTTCAAGACATGACAAGTAAATCAGTTAATTCAAGATTAGATGGGTGTGCCATTGGAATTTCAGCATTATACTGTACCTTTCTATTGCTGTGTACGAGCTCTTCATTGAATCTGCGAGAATTTTTTTGTCTGAACCTGGGAGCTCATCCTGGTTTTGCAGTCACTACCGGAGGTGGAAGGCTTATGAGTAATACAGTCTAATTTAATGGACGACTATTAGATTTGTTCATTAAATATCACTTTGCAATGATTGTTGTCACAGGCGACAGTCAGAATTTGTGTAATGTGTATGGTCTATGCATAAGCTAACGTACAATTAGATTCTACTGGTTGGTCTGATGCATGCCTATATTCTTTTCCTAAAATATATGCTGGTAGCTTGAAGTCAACAGCAGTAGAATATGAATCCATGTTCAAACATCTGCACTCTATTTATTTTTTCATAGCACAATGGAATACTTTAT

Ace file of the UniGene sp_v3.0_unigene313

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dev_Cell_Death multi-domain protein	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	58%

Source	Gene names
Sma3	GSVIVT00037409001; MtrDRAFT_AC158501g20v2; Os05g0164900; POPTRDRAFT_577085; RCOM_0687830; RCOM_0848890;

Source	InterPros	Term	Type	Identity
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-
Sma3	Development/cell death domain	IPR013989	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G01660.1	" CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (Inte	0.0	45%
RefSeq	Arabidopsis thaliana	NP_195786.4	uncharacterized protein [Arabidopsis thaliana]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HC99

Fln msg: your sequence is shorter than subject: 782 - 825

Fln protein: MGAGRRTQTFTFNDNNGKGGTSPYSPGGGAGNFRALKKSDLAAVIFGCSHQTFKECVTQLIFGLPAPHFTYVQNISPGMPLFLFNYSDRKMHGAFEAASHGKMNINPYAWTDGSEKTQFPAQVRVYIKQHSEPLAEAIFRKAINANYYTNTHFWFELNHAQTEALLAIFVTKPKKYSEIGSPKVAENGSWYSKRDLSSSNGWPTRSAPLRTSPSSREVASEVSSSGESSLLSKKYEELSHREEDSWQLNSRSFSKNKGKCKGATSSSCSSYEQSFDGSRRTNSEDELTAMDEMLKSSHIVPKQEPESTGRESDLCQPVIISKENLELNVLEKLKHLAIDRQRMSNNPTPDLGVNNDNVICNIKNGMEKSTHRKLLQSQATLEREKERLLSNLTCMDVSIMEPLQKYMDLQGSIIAQMQQELTELRYFVEKTRNEFQNTLEIQELQNKNTILEQKQVEMDSEIQILKEQFTELKESLPGRNIDTFGDKLTEISNDEQSKYSECSIYLLGGHDGCSWLGTLDAYLPDTNIIKHIAEAPTTRSYAAATILDGSIYIFGGGNGILWHNSVEQYNPNSGLWTTCPSMGFQRGSLAGACLDNKIFAMGGGNGAEYFSEVEMYDPYLGKWLPYGTMLQKRFALAGTVLGGALYALGGFDGKQYLKSVERFDPREAQWIQLEEMSAKRGSLSAAVLNEKLYAIGGFDGSKLLSSVEVFDPRAGSWLMVDSISSPRAYGAAAVLGDSVYMIGGLGEIDYVDSVETYQDGVGWKVSSQAIGKRSFLTAVVL*

Protein Length: 783

Fln nts: GACGAGCGGAAAGTATTTATAGCATCGGGCACAACTTCTACTCTGGCTTGGAGCAGGGCTCCTGCATCTTGGACCATAACTCTTGCGTTGTGCAGTTTGGAAACAAGAGGAAG_-_ATGGGAGCTGGAAGAAGAACTCAAACTTTCACTTTCAATGATAATAATGGCAAAGGAGGAACAAGTCCATATTCTCCGGGGGGTGGGGCTGGAAATTTCAGAGCCCTTAAGAAATCTGATCTGGCGGCGGTTATTTTTGGCTGCTCCCACCAAACATTTAAGGAATGCGTTACTCAATTGATATTCGGGTTGCCTGCACCTCACTTTACATATGTGCAAAATATTTCCCCTGGCATGCCATTGTTCCTTTTTAACTACAGTGATAGAAAGATGCACGGTGCTTTTGAAGCAGCAAGCCATGGAAAGATGAATATCAATCCATATGCATGGACAGATGGGTCGGAGAAGACCCAGTTTCCTGCGCAGGTTCGTGTTTATATCAAGCAGCACAGTGAGCCTCTTGCGGAAGCTATTTTCAGAAAAGCCATCAATGCAAATTATTACACCAATACACATTTTTGGTTTGAGTTAAACCATGCTCAGACTGAAGCATTGCTGGCTATTTTTGTTACCAAACCCAAAAAGTACAGTGAAATAGGTTCCCCAAAAGTTGCAGAGAATGGATCATGGTATTCTAAAAGAGATCTTAGTTCTTCCAATGGCTGGCCAACTCGCTCTGCTCCTTTGAGAACATCACCAAGCTCTAGAGAAGTGGCTTCAGAGGTGAGTAGTTCAGGAGAATCGTCTCTGTTGTCAAAAAAGTACGAGGAACTGTCTCATCGAGAAGAGGATTCATGGCAACTAAATAGTCGATCATTTTCAAAGAACAAGGGAAAGTGCAAAGGCGCGACTTCTAGCAGTTGTTCATCATATGAACAAAGCTTCGATGGTTCCAGAAGAACTAATTCAGAGGATGAATTGACTGCAATGGATGAGATGCTTAAAAGTTCACATATCGTACCCAAACAAGAACCTGAATCAACTGGCAGAGAATCAGATTTATGTCAACCAGTCATCATTTCAAAAGAAAATCTTGAGCTTAATGTGCTAGAGAAGTTGAAGCACTTGGCTATTGATCGTCAAAGAATGTCAAATAATCCTACACCAGATCTGGGTGTAAACAATGACAATGTGATTTGCAACATTAAGAATGGCATGGAGAAATCAACACACAGGAAACTTCTTCAGAGTCAAGCAACATTGGAAAGAGAGAAAGAAAGACTTTTATCCAACTTGACTTGCATGGATGTATCCATAATGGAGCCTTTGCAAAAGTATATGGATCTCCAAGGTTCAATTATAGCACAGATGCAACAAGAATTAACGGAGTTGAGATATTTTGTGGAGAAAACTCGTAATGAGTTTCAGAATACACTTGAGATCCAGGAGCTTCAAAACAAAAATACAATTTTGGAGCAGAAACAGGTTGAAATGGACTCAGAAATCCAGATTCTGAAGGAGCAATTTACGGAACTCAAGGAGTCATTGCCAGGAAGGAACATAGACACATTTGGAGATAAATTAACTGAAATATCTAATGATGAACAATCCAAATATTCTGAGTGTTCAATCTATCTTCTAGGGGGGCATGATGGATGTTCATGGTTGGGGACACTAGATGCATATTTACCGGACACAAATATCATCAAACACATCGCGGAAGCACCCACTACTCGCTCATATGCTGCAGCAACTATTCTGGATGGAAGCATATATATTTTTGGTGGGGGAAATGGAATTCTATGGCACAACAGTGTTGAACAGTATAACCCAAACAGTGGATTATGGACAACATGTCCTTCAATGGGTTTTCAAAGAGGCAGCTTAGCAGGAGCTTGTCTAGATAACAAAATTTTTGCAATGGGAGGTGGCAATGGGGCAGAATATTTTTCTGAAGTGGAGATGTATGATCCATATCTTGGCAAATGGTTACCCTATGGAACCATGCTTCAAAAACGCTTTGCTTTAGCAGGAACGGTTCTGGGTGGAGCGTTATATGCTCTGGGTGGTTTTGATGGCAAGCAATACTTGAAGTCAGTTGAAAGATTTGATCCACGTGAGGCTCAATGGATCCAACTTGAAGAAATGAGTGCCAAGAGAGGAAGCTTGTCAGCTGCAGTATTAAATGAAAAGCTCTATGCAATCGGGGGTTTTGACGGCTCAAAACTTTTGTCTAGTGTGGAAGTTTTTGATCCTCGTGCAGGTTCCTGGCTCATGGTTGATTCAATATCTAGTCCACGGGCTTATGGGGCCGCGGCAGTTCTTGGAGATTCTGTCTATATGATTGGTGGCCTTGGAGAAATCGATTATGTCGACTCTGTTGAAACTTATCAGGATGGTGTTGGTTGGAAAGTCAGTTCACAAGCTATTGGCAAACGATCATTCCTAACTGCAGTTGTTTTATAG___TTCTATATAGATATGGCAGGATACACTCTCTTTTTCAAGACATGACAAGTAAATCAGTTAATTCAAGATTAGATGGGTGTGCCATTGGAATTTCAGCATTATACTGTACCTTTCTATTGCTGTGTACGAGCTCTTCATTGAATCTGCGAGAATTTTTTTGTCTGAACCTGGGAGCTCATCCTGGTTTTGCAGTCACTACCGGAGGTGGAAGGCTTATGAGTAATACAGTCTAATTTAATGGACGACTATTAGATTTGTTCATTAAATATCACTTTGCAATGATTGTTGTCACAGGCGACAGTCAGAATTTGTGTAATGTGTATGGTCTATGCATAAGCTAACGTACAATTAGATTCTACTGGTTGGTCTGATGCATGCCTATATTCTTTTCCTAAAATATATGCTGGTAGCTTGAAGTCAACAGCAGTAGAATATGAATCCATGTTCAAACATCTGCACTCTATTTATTTTTTCATAGCACAATGGAATACTTTAT

Fln Alignment:

Contig313___RALKKSDLAAVIFGCSHQTFKECVTQLIFGLPAPHFTYVQNISPGMPLFLFNYSDRKMHGAFEAASHGKMNINPYAWT-DGSEKTQFPAQVRVYIKQHSEPLAEAIFRKAINANYYTNTHFWFELNHAQTEALLAIFVTKP
F6HC99_____________RNLGKSDLGGVIFGCKHNTIDECHSKQLFGLPAAHFSYVRNINPGLTLFLFNYSDRKLHGIFEAASPGQMNINPYGWTPDGSQLTPYPAQVRIQIRMQCQPLLEEQFKPIISKNYYEHRLFWFELDRAQTSKLVSLFSSSP

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
2308		66	33		0.997452
2331			16	83	0.994512
2334	83		16		0.994512
2338		16	83		0.994512
2523	20			80	0.999996
2527	90		10		0.90298
2528			90	10	0.90298
2529	90			10	0.90298
2531	10			90	0.90298
2532	90			10	0.90298
2534	90			10	0.90298
2537		10	90		0.90298
2538			90	10	0.90298
2539			10	90	0.90298
2541	10			90	0.90298
2545	80	20			0.999996
2550	88			11	0.923564
2551	88		11		0.923564
2553	11			88	0.923564
2639	76		23		1.0
2642		76	23		1.0
2645		25	75		1.0
2646		12		88	1.0
2649			12	88	1.0
2652	84			16	1.0
2842	64		35		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain