SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene310

Length: 2048 nt

UniGene Fasta

>sp_v3.0_unigene310
TGCTTAAGCAGTGGTATCAACGCAGAGTACACGGGGATTCCGAATGGGAAAAATGCAGCTCCCTCCTCATTTGTCTCACTTACTGTTGGCCCTTGGGTCTTCTTCTTCAATTGGCCGTCCTTGACGACGAGAGATCGTCCTGCCTTTTCCTCTAACGCAATCAGACTTTGGCGACATTTATTGTCACCGACAAAATTTGTTCCTCCGTTCAGCTTTATGCATGCCAAATAGCTAAAATTGGGTGAAATTTCCTGATTTTCCTTTTTTGTGGTGATGCCGAGTTGCGCCATATATATCAATCATATCAACATCGGGGTCGAATTGGGACGTCTGCTCGGGGGTCGAGACCAAATTGGGCCCCCCTGATTTCTATATTTTAGTTTATCATCACCATTGTTGAGGTATTTCAATTATAAGATATGATATCGAAGAGATTGGCTTCGGCCTTGTGGATCCTGCAATATCCACTGAAGCCCATTTCAATTTCAAACCCAATGGAATTACGACATCGCCATCCTCTGGGTGCCCGATTTTCCTCAATGAGTCTCTTCCATAATCAGTGCAAAAGACCGCACCATGTAAATGTCAATAGCCAAATAGGGCATTGGGTTTGTTTGGGCCAGAGAAATAACAATTACAGGAACAATACATTCGTTAAAGCTATGATTGATCAGCATAGCAGGGTTGGGCAATCGCTGAATCCAGTAGCATCTTATCTGCAAACTTCAAATGCATCGGAAGGGGGCGGCAGAGATGATCTGGAGAGGCTTGGTATTCGTGGAGTTCCGCTGGGCCGTCAAAGCAATCGCCTGCAATCTGAAAAGCTCGTTGTTGCTGTTGACATTGATGAAGTTCTTGGCAACTTCCTCCTTGCTTTGAACACATTTATAGCTGAGCGCTACTTTTTGAATCACAACATTGCAGAGTATCATGTCTATAACTTCGACAAGGTTTGGAAATGCTCCCTTGCAGAAGCCAATGTTCGTGTTCATGAGTTTTTTAAATCCAAACACTTCAGAGAGGGGATCCATCCGATTCCGGGTGCATACCAAGCTCTCCTTCAGTTGAGATCATTTTGCCATTTCTCGATTGCGACGTCTCGTCAAAATGTAATAAAGCAGCAAACAATTGATTGGGTTGAAAGACACTATTCAGGCTTATTCAGGGAAATTTATTTTGGAAATCACTTTTCCTTTGATGGAGCAGAAAAATCAAAGTCAGAAATTTGCAGGTCATTTGGAGCACAGATTCTGATAGATGACAATCCTAGATATGCATTGGAATGTGCAGAAAATGGTATTGAAGTTCTTCTTTTCGACTACCATAATAGCTATCCTTGGTGCAAAATTAGTGACATTTCCTTACACCCCCTCATCACCAAAGTTCACAATTGGCAAGAAGTTAAACAACATTTGGTGGCTCGTATCTTTTCATAACATTGTAAAATTTCCATGATCTGCAATACATGGACCCCCCATAGTAACATGATTTAGGTTTTCTATGGTGGATTAATTGGTCCCACGTTCCTCAAACATCTATTGCATGTGGAATTTGTTCTCATTATGGAAGTTTTCAAGAAATTGAAAAAATTGGCAACTTCCAAATTTTCGTGCATGTTCCTAGATTACATTATGCAACCTGGAATTTGTATGTTCCTATATTCCCAGCTAGCCCACTAACACTTTTCTGCTGCATCTATCAATGAAAAATATTTCCTATTTGAAGTATTTATCCTTATTTCTGGAAGTGGCAGCCTTGTAGAAGGGGATATTTTTCAGAGAAACTTGCTTTATTGCAGCATTAAGTGGAGATACTGTATCAGTCATATTTCTATTGTCCCTGCCTTGCAGCTGGGGATTCCAGACTTGAAAAAACAATTAATGTCAATGCCACATTGCTGAAAGAAACCACAGACAAATGTAAGGAATCAGTTACAGGAATTGCTGGAATTGAAAAATCGTAGCTGATGGAAGGTAGGAGGTTGGATGACCACCATGGACCTGAATAGACTAGTGTTGTCTTAACATGAGTTTGCTGCATTCATTCTC

Ace file of the UniGene sp_v3.0_unigene310

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein domain containing protein-like protein [Arabidopsis thaliana] gb\|AAL09809.1\| AT4g33140/F4I10_70 [Arabidopsis thaliana] gb\|AAM91476.1\| AT4g33140/F4I10_70 [Arabidopsis thaliana] gb\|AEE86180.1\| 5'	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	53%
Sma3	Putative uncharacterized protein tac7077	-	-	1.414e-09	-

Source	Gene names
Sma3	AT4g33140; At4g33140; CHLREDRAFT_151525; F4I10.70; GSVIVT00016353001; MtrDRAFT_AC155891g4v1; Os06g0192900; OsI_21993; OsJ_20426; P0698A06.20; PHYPADRAFT_139183; POPTRDRAFT_417116; RCOM_0708290; tac7077;

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33140.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein chr4:15981648-15984135 FORWARD LENGTH=353	50%
RefSeq	Arabidopsis thaliana	NP_567913.1	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein domain containing protein-like protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002309442.1	predicted protein, partial [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HGY9

Fln msg:

Fln protein: MISKRLASALWILQYPLKPISISNPMELRHRHPLGARFSSMSLFHNQCKRPHHVNVNSQIGHWVCLGQRNNNYRNNTFVKAMIDQHSRVGQSLNPVASYLQTSNASEGGGRDDLERLGIRGVPLGRQSNRLQSEKLVVAVDIDEVLGNFLLALNTFIAERYFLNHNIAEYHVYNFDKVWKCSLAEANVRVHEFFKSKHFREGIHPIPGAYQALLQLRSFCHFSIATSRQNVIKQQTIDWVERHYSGLFREIYFGNHFSFDGAEKSKSEICRSFGAQILIDDNPRYALECAENGIEVLLFDYHNSYPWCKISDISLHPLITKVHNWQEVKQHLVARIFS*

Protein Length: 340

Fln nts: TGCTTAAGCAGTGGTATCAACGCAGAGTACACGGGGATTCCGAATGGGAAAAATGCAGCTCCCTCCTCATTTGTCTCACTTACTGTTGGCCCTTGGGTCTTCTTCTTCAATTGGCCGTCCTTGACGACGAGAGATCGTCCTGCCTTTTCCTCTAACGCAATCAGACTTTGGCGACATTTATTGTCACCGACAAAATTTGTTCCTCCGTTCAGCTTTATGCATGCCAAATAGCTAAAATTGGGTGAAATTTCCTGATTTTCCTTTTTTGTGGTGATGCCGAGTTGCGCCATATATATCAATCATATCAACATCGGGGTCGAATTGGGACGTCTGCTCGGGGGTCGAGACCAAATTGGGCCCCCCTGATTTCTATATTTTAGTTTATCATCACCATTGTTGAGGTATTTCAATTATAAGAT_-_ATGATATCGAAGAGATTGGCTTCGGCCTTGTGGATCCTGCAATATCCACTGAAGCCCATTTCAATTTCAAACCCAATGGAATTACGACATCGCCATCCTCTGGGTGCCCGATTTTCCTCAATGAGTCTCTTCCATAATCAGTGCAAAAGACCGCACCATGTAAATGTCAATAGCCAAATAGGGCATTGGGTTTGTTTGGGCCAGAGAAATAACAATTACAGGAACAATACATTCGTTAAAGCTATGATTGATCAGCATAGCAGGGTTGGGCAATCGCTGAATCCAGTAGCATCTTATCTGCAAACTTCAAATGCATCGGAAGGGGGCGGCAGAGATGATCTGGAGAGGCTTGGTATTCGTGGAGTTCCGCTGGGCCGTCAAAGCAATCGCCTGCAATCTGAAAAGCTCGTTGTTGCTGTTGACATTGATGAAGTTCTTGGCAACTTCCTCCTTGCTTTGAACACATTTATAGCTGAGCGCTACTTTTTGAATCACAACATTGCAGAGTATCATGTCTATAACTTCGACAAGGTTTGGAAATGCTCCCTTGCAGAAGCCAATGTTCGTGTTCATGAGTTTTTTAAATCCAAACACTTCAGAGAGGGGATCCATCCGATTCCGGGTGCATACCAAGCTCTCCTTCAGTTGAGATCATTTTGCCATTTCTCGATTGCGACGTCTCGTCAAAATGTAATAAAGCAGCAAACAATTGATTGGGTTGAAAGACACTATTCAGGCTTATTCAGGGAAATTTATTTTGGAAATCACTTTTCCTTTGATGGAGCAGAAAAATCAAAGTCAGAAATTTGCAGGTCATTTGGAGCACAGATTCTGATAGATGACAATCCTAGATATGCATTGGAATGTGCAGAAAATGGTATTGAAGTTCTTCTTTTCGACTACCATAATAGCTATCCTTGGTGCAAAATTAGTGACATTTCCTTACACCCCCTCATCACCAAAGTTCACAATTGGCAAGAAGTTAAACAACATTTGGTGGCTCGTATCTTTTCATAA___CATTGTAAAATTTCCATGATCTGCAATACATGGACCCCCCATAGTAACATGATTTAGGTTTTCTATGGTGGATTAATTGGTCCCACGTTCCTCAAACATCTATTGCATGTGGAATTTGTTCTCATTATGGAAGTTTTCAAGAAATTGAAAAAATTGGCAACTTCCAAATTTTCGTGCATGTTCCTAGATTACATTATGCAACCTGGAATTTGTATGTTCCTATATTCCCAGCTAGCCCACTAACACTTTTCTGCTGCATCTATCAATGAAAAATATTTCCTATTTGAAGTATTTATCCTTATTTCTGGAAGTGGCAGCCTTGTAGAAGGGGATATTTTTCAGAGAAACTTGCTTTATTGCAGCATTAAGTGGAGATACTGTATCAGTCATATTTCTATTGTCCCTGCCTTGCAGCTGGGGATTCCAGACTTGAAAAAACAATTAATGTCAATGCCACATTGCTGAAAGAAACCACAGACAAATGTAAGGAATCAGTTACAGGAATTGCTGGAATTGAAAAATCGTAGCTGATGGAAGGTAGGAGGTTGGATGACCACCATGGACCTGAATAGACTAGTGTTGTCTTAACATGAGTTTGCTGCATTCATTCTC

Fln Alignment:

Contig310___NNYRNNTFVKAMIDQHSRVGQSLNPVASYLQTSNASEGGG-----------RDDLERLGIRGVPLGRQSN----------RLQSEKLVVAVDIDEVLGNFLLALNTFIAERYFLNHNIAEYHVYNFDKVWKCSLAEANVRVHEFFKSKHFREGIHPIPGAYQALLQLRSFCHFSIATSRQNVIKQQTIDWVERHYSGLFREIYFGNHFSFDGAEKSKSEICRSFGAQILIDDNPRYALECAENGIEVLLFDYHNSYPWCKISDISLHPLITKVHNWQEVKQHLVARIFS
F6HGY9_____________NNHNNNKNLAASTSNGFRIGLSMRGCSDSNKRRVDRNGHGAFAHSYQQQVLRDFEIGLPDAGIPTGHGASHHGKLLGFPLRPLPEKIVVAVDVDEVLGNFVSALNRFIADRYSLKHSVSEYHVYEFFKIWNCSRDEADIRVHEFFKTSYFKTGIHPIPGAQQALHKLSRFCNLSIVTSRQNAIKDHTIEWIEKHYPGLFQEIHFGNHFALDGESRPKSEICRSLGAKVLIDDNPRYAIECAEIGIRVLLFDYENSYPWCKTESVSQHPLVTKVHDWEEVEQQLVSWIVS

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
63		83	16		0.994512
66		83	16		0.994512
68		83	16		0.994512
70		16		83	0.994512
74			16	83	0.994512
79		83	16		0.994512
81		16		83	0.994512
608		25		75	0.996473
835	10			90	0.90298
970		14		85	0.999981
1023		14	85		0.993533
1025			85	14	0.993533
1026			85	14	0.993533
1300	50		50		1.0
1433		22		77	0.999999
1468		75		25	1.0
1773	66		33		0.997452
1781	20		80		0.995493
1782	80			20	0.995493
1785	80			20	0.995493
1854	50		50		1.0
1904		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain