SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene302

Length: 2446 nt

UniGene Fasta

>sp_v3.0_unigene302
ACCATCGCCAGTTATAAAATAAAAGCGGTGGTGTTCGTGTATATTAACCATCGTAGCTCCCTCGAAACGGATGAGATGAAAAACGTATCATGAAATCCTTCCCTTGGAGTAAAACTTTCCCTATTATATTTTCTTCTCTGGGATTTTTGCAGCTTTCGTATTTGCGGTCTTCTTGGGGTTCTGCTTAGAAGGTCAGAGTTGGGTAGGGTTTTCAGTTTTTTCCCAGCGGCAGAGGCATGGCGAGATCTGGCAGGCCGCGTCGGGCAAGCCCATCAGGGTCGATGTCTGGTTCCTCATCATATTCAGGATCTTCTTCCGCTTCAGGTTCACGGTCACGCTCTCGTTCTCGGTCGAGGTCCTTCAGTTCGTCTTCCGTTTCCCGTAGCGACAGTTCCAGGAGTCGCAGCCCTCCGCCGCCCAGGAAAAGCCCAACGTCATCAACAAGGAGAGGCCGGACACCACCGTTGCTGCCTAAGCATTCTTCACCTATTAGGAAACCTTCATCACCTCCTGAATCAGTGGTACTTCACATTGCCAATCTGACTCGAAATGTGAATGAAGGTCATTTAAAAGAAATTTTTTGTAACTTTGGTGAGGTAGTCAATGTGGAACTGTCAATGGATCGAAGTGTTCAACTGCCTAAGGGATATGGATATGTTGAGTTCAAGACTAGAGCTGATGCTGAAAAAGCCCTACTTTACATGGATGGAGGCCAGATTGATGGAAATGTTGTCAGTGCACGATTTACACTTCCACCACGTACAAAAGCATCTTCACCCCCAAAGGCAGTTGTACTCCCTCCTAAAAGAGAACCTGCAGTGAAGGAGATTGCTGGTCCTGATTCAGAAAAGGGTGAATTAGTACGCCAGAGAGAATCTCCTCAACCACGACGAAAAGCATCTCCACCACGAAGGAGGTCTCCAATATCACGTCGAGTAGAGTCACCTCCTCGTCACCGGGTGGAGTCACCTCCTCGACGTCGGGTGGAGTCACCTCCGCGACGTCGTGTGGATTCTCCCCCTCGGCGACGGCGGGATTCTCCACCTCGGCGAAGAGATTCTCCTCGTCGTCGTCCATCTTCTCCTCCACCTCGCAGGCGTTCTCCATCACTACCCCCTCGCAGGCATCGATCACCAATCAGAATCTCTCCTCGAAGGGTCAGAGGAAGCCCAGTTGGCCGTAAGCGATCACCAGTTTCTCATAGACGACGCTCTCCTCTTCCAAGACGTGGCCGTACTCCTCCTCGCAGGTCCCCTCCTCTTCACCGGCGCAGTCGTTCACCTGTTCGTAGGCCTATGCGTTCTAAATCAAGATCACTGTCTCCTATCCGCAGGGCACGACCTTCTACTCGTAGACGCGGAAGGTCAGATTCGTCATCTTCAGAATCACAGAGTCCACGCAAGTCCCCTCGTGGAAATAGGAGAATTTCAAGAAGCCGTAGTCCTAAAAGGCCTGCGAGGGGAAGAAGCAGTAGTATTAGTGGTAGCAGTAGCTCTCCTCCCTCTAAAATTAATTGAAAGCTCCCCTCTATCTAAAATTTTCCGATAAAGCCTGGAATATGTCAACCATTTTAAGGTTCCTTGATTTGAATGGAACCAGTATAGAACATGGGCAAGCCTGGGCTTTTGTCATCTACACTTGCACTGCTTGTATGTGTCAGTAATAGCTAGGTTCTTATATGATTGCATTTTGTCTTAACTACTACTCTCTGACTTCATTTCCTATGGCTTTTCCGAGGTCATTTTTTAGCAAATGTCAGAGGACCTCAGTTTTTATTATGTTATTAGTGATTCCATATATTAATGTCTTTCTAGGTCATCTTTCTTTTGTTTGCCTTGTTGTTTGTTTCACCTTTGGCATTGGTCTTGCTGCTGGCGGTCCGTATTTCTTCAGGCAGCATTCAACATCCGACATGGTCTTTGGTCACAAAATGTTGGGAAATTGAAGCCATAATTTTGGCATGATGAATAGGGTTCCGATGAGTTCAAAGGATATACCATAACTTTAACCATGACTGGCATGTGTCTACTATACACATAATTAAGTTGAATTTGTCCAAGGAGCAGTAAAGCTTGATGATTTGGAGAAATGTGATGCAGAGGTGGATTTTTTCACAAACTGAAGATTTTCTGTATAAGGTTGAATGACAGCCTACCTTCAGATCACATACACAATCTATAAATTATAACAAATGGTAATGCTGGGAGATCAATATAGGGTCTTGTTATAACCCCTATCTTAGATTATATTTGTTTCCAGATGTTGAGCTTAGCAAGAAGGTCCCCTTCATTACTTTCTAATGCTATTGGATGTTTCTTCTGGGTTCGAACTTAAAAATTAATTATAGACATGGATCTTGTGGCATTGCGTTATGTTATCCTATTAATGAATTTAGGCGATGAAGCGATTTGACATATTTGATTGTAGAATTAAAGGATTTGCTGGT

Ace file of the UniGene sp_v3.0_unigene302

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribonucleic acid binding protein S1, putative n=1 Tax=Ricinus communis RepID=B9RI44_RICCO	-	-	2.00386e-43	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16610.3	-	9.99967e-42	64%
RefSeq	Arabidopsis thaliana	NP_973844.1	protein arginine/serine-rich 45 [Arabidopsis thaliana]	9.99967e-42	64%
RefSeq	Populus trichocarpa	XP_002317618.1	predicted protein [Populus trichocarpa]	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLM9

Fln msg: your sequence is longer than subject: 427 - 347

Fln protein: MARSGRPRRASPSGSMSGSSSYSGSSSASGSRSRSRSRSRSFSSSSVSRSDSSRSRSPPPPRKSPTSSTRRGRTPPLLPKHSSPIRKPSSPPESVVLHIANLTRNVNEGHLKEIFCNFGEVVNVELSMDRSVQLPKGYGYVEFKTRADAEKALLYMDGGQIDGNVVSARFTLPPRTKASSPPKAVVLPPKREPAVKEIAGPDSEKGELVRQRESPQPRRKASPPRRRSPISRRVESPPRHRVESPPRRRVESPPRRRVDSPPRRRRDSPPRRRDSPRRRPSSPPPRRRSPSLPPRRHRSPIRISPRRVRGSPVGRKRSPVSHRRRSPLPRRGRTPPRRSPPLHRRSRSPVRRPMRSKSRSLSPIRRARPSTRRRGRSDSSSSESQSPRKSPRGNRRISRSRSPKRPARGRSSSISGSSSSPPSKIN*

Protein Length: 428

Fln nts: ACCATCGCCAGTTATAAAATAAAAGCGGTGGTGTTCGTGTATATTAACCATCGTAGCTCCCTCGAAACGGATGAGATGAAAAACGTATCATGAAATCCTTCCCTTGGAGTAAAACTTTCCCTATTATATTTTCTTCTCTGGGATTTTTGCAGCTTTCGTATTTGCGGTCTTCTTGGGGTTCTGCTTAGAAGGTCAGAGTTGGGTAGGGTTTTCAGTTTTTTCCCAGCGGCAGAGGC_-_ATGGCGAGATCTGGCAGGCCGCGTCGGGCAAGCCCATCAGGGTCGATGTCTGGTTCCTCATCATATTCAGGATCTTCTTCCGCTTCAGGTTCACGGTCACGCTCTCGTTCTCGGTCGAGGTCCTTCAGTTCGTCTTCCGTTTCCCGTAGCGACAGTTCCAGGAGTCGCAGCCCTCCGCCGCCCAGGAAAAGCCCAACGTCATCAACAAGGAGAGGCCGGACACCACCGTTGCTGCCTAAGCATTCTTCACCTATTAGGAAACCTTCATCACCTCCTGAATCAGTGGTACTTCACATTGCCAATCTGACTCGAAATGTGAATGAAGGTCATTTAAAAGAAATTTTTTGTAACTTTGGTGAGGTAGTCAATGTGGAACTGTCAATGGATCGAAGTGTTCAACTGCCTAAGGGATATGGATATGTTGAGTTCAAGACTAGAGCTGATGCTGAAAAAGCCCTACTTTACATGGATGGAGGCCAGATTGATGGAAATGTTGTCAGTGCACGATTTACACTTCCACCACGTACAAAAGCATCTTCACCCCCAAAGGCAGTTGTACTCCCTCCTAAAAGAGAACCTGCAGTGAAGGAGATTGCTGGTCCTGATTCAGAAAAGGGTGAATTAGTACGCCAGAGAGAATCTCCTCAACCACGACGAAAAGCATCTCCACCACGAAGGAGGTCTCCAATATCACGTCGAGTAGAGTCACCTCCTCGTCACCGGGTGGAGTCACCTCCTCGACGTCGGGTGGAGTCACCTCCGCGACGTCGTGTGGATTCTCCCCCTCGGCGACGGCGGGATTCTCCACCTCGGCGAAGAGATTCTCCTCGTCGTCGTCCATCTTCTCCTCCACCTCGCAGGCGTTCTCCATCACTACCCCCTCGCAGGCATCGATCACCAATCAGAATCTCTCCTCGAAGGGTCAGAGGAAGCCCAGTTGGCCGTAAGCGATCACCAGTTTCTCATAGACGACGCTCTCCTCTTCCAAGACGTGGCCGTACTCCTCCTCGCAGGTCCCCTCCTCTTCACCGGCGCAGTCGTTCACCTGTTCGTAGGCCTATGCGTTCTAAATCAAGATCACTGTCTCCTATCCGCAGGGCACGACCTTCTACTCGTAGACGCGGAAGGTCAGATTCGTCATCTTCAGAATCACAGAGTCCACGCAAGTCCCCTCGTGGAAATAGGAGAATTTCAAGAAGCCGTAGTCCTAAAAGGCCTGCGAGGGGAAGAAGCAGTAGTATTAGTGGTAGCAGTAGCTCTCCTCCCTCTAAAATTAATTGA___AAGCTCCCCTCTATCTAAAATTTTCCGATAAAGCCTGGAATATGTCAACCATTTTAAGGTTCCTTGATTTGAATGGAACCAGTATAGAACATGGGCAAGCCTGGGCTTTTGTCATCTACACTTGCACTGCTTGTATGTGTCAGTAATAGCTAGGTTCTTATATGATTGCATTTTGTCTTAACTACTACTCTCTGACTTCATTTCCTATGGCTTTTCCGAGGTCATTTTTTAGCAAATGTCAGAGGACCTCAGTTTTTATTATGTTATTAGTGATTCCATATATTAATGTCTTTCTAGGTCATCTTTCTTTTGTTTGCCTTGTTGTTTGTTTCACCTTTGGCATTGGTCTTGCTGCTGGCGGTCCGTATTTCTTCAGGCAGCATTCAACATCCGACATGGTCTTTGGTCACAAAATGTTGGGAAATTGAAGCCATAATTTTGGCATGATGAATAGGGTTCCGATGAGTTCAAAGGATATACCATAACTTTAACCATGACTGGCATGTGTCTACTATACACATAATTAAGTTGAATTTGTCCAAGGAGCAGTAAAGCTTGATGATTTGGAGAAATGTGATGCAGAGGTGGATTTTTTCACAAACTGAAGATTTTCTGTATAAGGTTGAATGACAGCCTACCTTCAGATCACATACACAATCTATAAATTATAACAAATGGTAATGCTGGGAGATCAATATAGGGTCTTGTTATAACCCCTATCTTAGATTATATTTGTTTCCAGATGTTGAGCTTAGCAAGAAGGTCCCCTTCATTACTTTCTAATGCTATTGGATGTTTCTTCTGGGTTCGAACTTAAAAATTAATTATAGACATGGATCTTGTGGCATTGCGTTATGTTATCCTATTAATGAATTTAGGCGATGAAGCGATTTGACATATTTGATTGTAGAATTAAAGGATTTGCTGGT

Fln Alignment:

Contig302___LLPKHSSPIRKPSSPPESVVLHIANLTRNVNEGHLKEIFCNFGEVVNVELSMDRSVQLPKGYGYVEFKTRADAEKALLYMDGGQIDGNVVSARFTLPPRTKASSPPKAVVLPPKREPAVKEIAGPDSEKGELVRQRE
B8LLM9_____________LLPKQSSPIRKPSPPPESVVLHIANLTRNVNEGHLKEIFCSFGEVVNVELSMDRSVQLPKGYGYVEFKTRADAEKALLYMDGAQIDGNVVSARFTLPPRTKASTPPKAVAVPPKREPTAKEIAGPDSEKGELVRQRE

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
261			23	76	1.0
1481	10		90		0.90298
1482		10		90	0.90298
1483	10		90		0.90298
1484			90	10	0.90298
1575	85			14	0.993533
1652		10		90	0.90298
1656		10		90	0.90298
1657	10		90		0.90298
1760			87	12	0.992554
1761	87			12	0.992554
2252	11			88	0.923564
2253		11	88		0.923564
2254	11			88	0.923564
2289		83		16	0.994512
2291		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain