SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene299

Length: 1789 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene299 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1683 family protein [Dictyostelium discoideum AX4] gb\|EAL63853.1\| DUF1683 family protein [Dictyostelium discoideum AX4]	-	-	4.0e-11	26%
FL-Next	tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	42%

Source	Gene names
Sma3	POPTRDRAFT_772085; RCOM_0281100; VITISV_007638;

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1683, C-terminal	IPR012880	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: G7L7Y8

Fln msg: your sequence is shorter than subject: 422 - 885

Fln protein: INIVDSKVSSMASPRETASTSLQSYHVELLIVQSNGEQLERVTRDEENFQRCSGILAVPFIDVGTSWSTLLFIKWHKPKLVTLFVSLGYQASQKIHVHKSLQLEGRIPINVSHRYMTPFRRDSLLLENVKNKTSSDLDVSLALNEANVLVVTARNFTEVPLRLISVTVEEEDGSSCSVRRAGETYAGSLSVATADLEHYHAEPEAERGSITESDFSFLMMPNEAYRQIFSVHPSVTSSALGVGTICIRWKRDMESMKLFSQGKARDVSHFQPKVTIDSPRVTTMQVKLSSVRVEKPPLIVSLECPSHALFGAPFTLALKIQNETTCLQEVRFSLVDSQSFLVSGAHSDTISILPYSSHILSYKLVPLASGLLQLPQVNLTATRYSASFHPPPASTQLFVFPSNPHFKSGPFTSGLAIVNSG*

Protein Length: 423

Fln nts: ATAAATATAGTTGATTCAAAAGTAAGTTCAATGGCAAGTCCGCGGGAGACAGCATCAACTTCCTTGCAGTCATATCATGTGGAGCTTCTGATAGTACAAAGCAATGGAGAACAATTAGAAAGAGTGACAAGAGATGAAGAAAATTTTCAGAGGTGTTCTGGTATTCTGGCAGTCCCGTTTATAGATGTAGGCACTTCATGGTCTACTCTGTTATTCATTAAGTGGCACAAACCAAAGCTGGTAACTTTATTTGTTTCACTTGGATACCAAGCTTCTCAAAAAATCCATGTGCATAAGAGCTTACAGTTAGAGGGTAGGATTCCCATCAATGTCAGCCACAGATATATGACACCTTTTAGACGAGATTCTCTGCTACTGGAAAATGTTAAAAACAAAACATCTTCTGATTTAGACGTTTCATTGGCTTTAAATGAAGCCAATGTACTTGTGGTAACAGCAAGAAATTTTACCGAAGTTCCCTTAAGATTGATATCAGTAACTGTTGAGGAGGAGGATGGCTCTTCATGCTCTGTAAGGCGGGCTGGGGAAACTTATGCTGGATCGCTTTCTGTTGCAACAGCTGATTTGGAACATTATCATGCAGAGCCTGAAGCCGAAAGGGGAAGTATAACAGAATCTGATTTTTCATTTTTAATGATGCCAAATGAAGCATACAGACAGATCTTTTCAGTGCACCCATCTGTCACGTCTTCAGCACTTGGTGTAGGGACTATTTGCATTAGATGGAAAAGGGATATGGAATCTATGAAGTTATTCTCACAGGGAAAAGCAAGGGATGTTTCTCATTTTCAGCCTAAAGTAACTATTGATTCCCCAAGAGTGACAACAATGCAAGTAAAGCTTTCATCTGTAAGAGTGGAGAAACCTCCATTAATTGTGAGTCTGGAGTGCCCTTCTCATGCTTTATTTGGGGCACCCTTCACACTTGCTTTGAAAATACAAAATGAGACCACGTGTCTGCAAGAAGTTAGATTTTCTTTAGTTGATTCACAGAGCTTCCTTGTGTCTGGAGCTCATAGTGACACGATTTCTATTTTACCTTATTCTAGCCATATACTGTCTTACAAGCTTGTTCCTTTAGCTTCTGGTCTGTTGCAGTTACCACAAGTCAATCTTACTGCTACTCGGTACTCGGCTAGTTTCCATCCTCCTCCAGCAAGTACACAGCTATTTGTTTTTCCATCCAATCCTCATTTCAAATCAGGTCCTTTTACATCTGGGTTGGCTATTGTTAATTCTGGATAA___ATCCATGAAAAATAAACACCATTCAGTATTTCAAGCATTTCTATATGAAAAGTCAATGATGCATCACACCCAAACAAGAGTCTCTAATAGTGGAAGCCCTAGTATAAATGTTGTCTTTCTTTTGGATTTTAGCAAAGAGTTTCCTGATTTTCCTTTCCGTCTTCTTACTCTCGTTGCTCCAAACAGAGAATCATAAAGTCGTGATATATTTGTGTTTCAGAAGCCAACTATGTTCATGGTTCACGACATCATATTAAGAGGCATTCACCAAAGTCCAGCTACTTGTCTAGTAATACAATTTACGTCAGGTTACTTTAGCACAGGGATTTTTAGAATCTTACAGTGTTCCTACATGATATTTATACATTTGTATCTCTATTTATATCCTCTTATGTGTTTGTAAACAAATAATTTTTTTCATTTGGGTATGATTCCCAATATGTTGTAGTAATAACAAAGTGGGCTTGTTTCGGTGATTGTGCCAAGGCAAGCTTGACCAATCATTTCTCACTTCAATTCCCAT

Fln Alignment:

Contig299___INIVDSKVSSMASPRETASTSLQSYHVELLIVQS-NGEQLERVTRDE-ENFQRCSGILAVPFIDVGTSWSTLLFIKWHKPKLVTLFVSLGYQAS------QKIHVHKSLQLEGRIPINVSHRYMTPFRRDSLLL---------ENVKNKTSSDLDVSLALNEANVLVVTARNFTEVPLRLISVTVEEEDG--SSCSVRRAGETYAGSLSVATADLEHYHAEPEAERGSITESDFSFLMMPNEAYRQIFSVHPSVTSSALGVGTICIRWKRDMESMKLFSQGKARDVSHFQPKVTIDSPRVTTMQVKLSSVRVEKPPLIVSLECPSHALFGAPFTLALKIQNETTCLQEVRFSLVDSQSFLVSGAHSDTISILPYSSHILSYKLVPLASGLLQLPQVNLTATRYSASFHPPPASTQLFVFPSNPHFKSGPFTS
G7L7Y8_____________INLVDVKGGGLFSPRDSEPYSMDSHHVQLLGISGPEGEDDSQLDSDNIKKIQQSFGLISVPFIKNGDSWSCRLEIKWHRPKPIMLYVSLGYTPNSGESNAQMVHVHKNLQIEGTTAIVINHHYLMPFRRDPLLLTKNKQVSDSEQNKQASESDQPESLPSNQKTVLIVSAKNCTEVPLRLKSLSVEEEDGVERTCSIQHGSE----ELSKPT------------------------LLVPGEEFKKVFSLSSNVNISKLRLGTVCLRWRRDM------------GVHEKSASTTTLSSWVVTKQ-KLPDKNVELPPLIVSMECPPYAILGDPFTYCIRILNQTQLLQEIKYSLADAQSFVLCGYHNDTVYVLPKSEHIVSYKLVPLASGMQQLPRFSMTSARYSASYQPSNSSNSVFVFPSKPHFKTAGSTN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
662		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain