SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene287

Length: 2016 nt

UniGene Fasta

>sp_v3.0_unigene287
TGTACATCCAGATTGATACAGGACCGGGCTCCGCTCCTCCAAATCTACCCCGCATCAAAGTAACTCGATCCGTTTCTCTCCAGATCCTGTCAGAACGCTTCAATCCCCTTTTGAATGCCAGCCATTCTAAGGAAACTTGAGGGATTCAAACTCTGGATCTTGTGGAAGTTTTTCAATTATTTTGGAGATGGAGATAGAAGGGTTATCGGTGGTGTGCGCAGGGCTTGGCTGCGCGTCTCAAGATGCTGATGGCAAGCGAAATGAGTATATAAAGAGTGAAAACTGTTTAGAGAACTTGAAGGACTTGCAGCGATTTCTTCGCAGAGACCACCCACAAACCAGAGATGTGTTTAAACAGCTTGGCAAGTGGAATACAGTGTCTCAGGACTTGATACCCATCATTGAACAATATCGAAACGAGACCGAACTTGTAATGAACACTGTGAAGGTTATAGTTTTCCTCACTATGCCCATTGATCCTTCCTCTGATGACATCTCACTACAAATGGAGTACCTTTGGAGCTTCAAGGCTTCGTTTTCCTGCAATGATGCAATTGCTGTCATTGTTTCTCTTTTAGAAGAACCACTGGAACGCTTAGAATGTGAATCTTTTACAGAGGATGATTGGAAGGTGATCCAATTAGTACTCACCCTATTTCGTAACCTATTAGCTATTCGGGATCCTTCACCACAGCAGATGACAGGCAGATCTAGTTCTCAATTTCAATTTTTAAGGGATGGTTTCTTGGAGCATTTGTTTCATGAAAATGTGATGGACCTTCTTTTAGCACTGACTCAACATGTCGCTGGCTCGCATGGTTTCCTTAAGCAAGATAATTTACTTTTACTGGAGATTTTCCATTATATTTTTTCGGGTCAGCAGCCTGAGCTAGTAGCTACCGTGCAACAGAAAATTCTTAAGAGTGATACTAAATCACATCAATTATCAGGAACTCTACGGTCAATGATGGAAGAGGAAGAAGAGCAGAGAAGACTTCTGCGCCTAAGAGATTTGCCCCGTCATTCACAATTTTGTGGAACATTTGTTAGGCTTGCCCCGGATGGTTCAAAGAGGATTGTGAAGAGGAACCCATTTATCACTCCTGCTGAGAGTATACTTAAAACATGTCAGATCAAGCGAGGCCCTATAAAGCGGATTGCATGTGATACTAGTAGTCCAGTGTCATCCAAAAACAGCGTTCTGGGACTCCTCCAGCATTTTGCAGATCAGTTTCTGGATTCTGGATATAATGTGTTGATGCAGTCCGTGAGGGAGGACATCAGAAAAGAGCATCCTTCCATACAGACCAGTGATATTATTGTATTTTTTGAAGTTGCTCACTTTTTCATAGCATACCAGCGTTGCCGTGTCTCTAATTGTAAGGCAAAAACTGGTAGTGCTGAAATTAATGAATGCAACAAGGACGTCCATGACACTGTATACCGAGGTCTCATTTGTGCCCCTATTGCATCAACTATGAATGAACCCACATTCAACATGGTTATTTCTAAATGGCATTATGCTTTTGAAACTTTAAAGGAAACACATGACCTGAAGTCTTTGACAACAGCAGGAGCTCTGATAAAGGAGATGATTCACATGGTAGATCTTGTGCTTAAAATTTCCCGCAATGGTTCGAGAGAGAGAGAACATGAGGCTTGTACTGCACGGATACTTCTTTATAAAGTGTTCTATGATCAGACTGAGAATGGAATTTCTGTGTTTCTTCGGACACTCATAAAATCCTTCGATTATCATAAACAACCACGAAGTTACTTAGCAGATTTGGTGGAAATAACACATATCATGTTACGACTAATGGAAGCTCTCAAAGAAGCAGATGGTACTTTGAGGGTTCTCAGAAAAACTCAGAAAGGGAGGAAGAAGAAAAAGATGGATGATAGTCAACTAGATCCAGTTCAATATGGGGACAATAGTGGCTTGCAAGATGCCACTGAAGATGCGAGCAAAATGAAAGATTACCATGATGAAAAAGTAACAGATGGGACAGTGGA

Ace file of the UniGene sp_v3.0_unigene287

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	timeless family protein [Arabidopsis thaliana] dbj\|BAB10439.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED96277.1\| timeless family protein [Arabidopsis thaliana]	-	-	0.0	46%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	48%

Source	Gene names
Sma3	At5g52910; GSVIVT00006459001; OJ1008_D08.8; Os05g0210500; OsI_18875; OsJ_17530; PHYPADRAFT_231531; POPTRDRAFT_787123; RCOM_1581430;

Source	InterPros	Term	Type	e value	Identity
Sma3	Timeless protein	IPR006906	-	0.0	-
Sma3	Timeless C-terminal	IPR007725	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G52910.1	ATIM timeless family protein chr5:21457774-21463159 REVERSE LENGTH=1141	48%
RefSeq	Arabidopsis thaliana	NP_200103.1	timeless family protein [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002331831.1	predicted protein [Populus trichocarpa]	45%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: I1NGZ9

Fln msg: Distance to subject end: 613 aas, your sequence is shorter than subject: 609 - 1221

Fln protein: MEIEGLSVVCAGLGCASQDADGKRNEYIKSENCLENLKDLQRFLRRDHPQTRDVFKQLGKWNTVSQDLIPIIEQYRNETELVMNTVKVIVFLTMPIDPSSDDISLQMEYLWSFKASFSCNDAIAVIVSLLEEPLERLECESFTEDDWKVIQLVLTLFRNLLAIRDPSPQQMTGRSSSQFQFLRDGFLEHLFHENVMDLLLALTQHVAGSHGFLKQDNLLLLEIFHYIFSGQQPELVATVQQKILKSDTKSHQLSGTLRSMMEEEEEQRRLLRLRDLPRHSQFCGTFVRLAPDGSKRIVKRNPFITPAESILKTCQIKRGPIKRIACDTSSPVSSKNSVLGLLQHFADQFLDSGYNVLMQSVREDIRKEHPSIQTSDIIVFFEVAHFFIAYQRCRVSNCKAKTGSAEINECNKDVHDTVYRGLICAPIASTMNEPTFNMVISKWHYAFETLKETHDLKSLTTAGALIKEMIHMVDLVLKISRNGSREREHEACTARILLYKVFYDQTENGISVFLRTLIKSFDYHKQPRSYLADLVEITHIMLRLMEALKEADGTLRVLRKTQKGRKKKKMDDSQLDPVQYGDNSGLQDATEDASKMKDYHDEKVTDGTV

Protein Length: 610

Fln nts: TGTACATCCAGATTGATACAGGACCGGGCTCCGCTCCTCCAAATCTACCCCGCATCAAAGTAACTCGATCCGTTTCTCTCCAGATCCTGTCAGAACGCTTCAATCCCCTTTTGAATGCCAGCCATTCTAAGGAAACTTGAGGGATTCAAACTCTGGATCTTGTGGAAGTTTTTCAATTATTTTGGAG_-_ATGGAGATAGAAGGGTTATCGGTGGTGTGCGCAGGGCTTGGCTGCGCGTCTCAAGATGCTGATGGCAAGCGAAATGAGTATATAAAGAGTGAAAACTGTTTAGAGAACTTGAAGGACTTGCAGCGATTTCTTCGCAGAGACCACCCACAAACCAGAGATGTGTTTAAACAGCTTGGCAAGTGGAATACAGTGTCTCAGGACTTGATACCCATCATTGAACAATATCGAAACGAGACCGAACTTGTAATGAACACTGTGAAGGTTATAGTTTTCCTCACTATGCCCATTGATCCTTCCTCTGATGACATCTCACTACAAATGGAGTACCTTTGGAGCTTCAAGGCTTCGTTTTCCTGCAATGATGCAATTGCTGTCATTGTTTCTCTTTTAGAAGAACCACTGGAACGCTTAGAATGTGAATCTTTTACAGAGGATGATTGGAAGGTGATCCAATTAGTACTCACCCTATTTCGTAACCTATTAGCTATTCGGGATCCTTCACCACAGCAGATGACAGGCAGATCTAGTTCTCAATTTCAATTTTTAAGGGATGGTTTCTTGGAGCATTTGTTTCATGAAAATGTGATGGACCTTCTTTTAGCACTGACTCAACATGTCGCTGGCTCGCATGGTTTCCTTAAGCAAGATAATTTACTTTTACTGGAGATTTTCCATTATATTTTTTCGGGTCAGCAGCCTGAGCTAGTAGCTACCGTGCAACAGAAAATTCTTAAGAGTGATACTAAATCACATCAATTATCAGGAACTCTACGGTCAATGATGGAAGAGGAAGAAGAGCAGAGAAGACTTCTGCGCCTAAGAGATTTGCCCCGTCATTCACAATTTTGTGGAACATTTGTTAGGCTTGCCCCGGATGGTTCAAAGAGGATTGTGAAGAGGAACCCATTTATCACTCCTGCTGAGAGTATACTTAAAACATGTCAGATCAAGCGAGGCCCTATAAAGCGGATTGCATGTGATACTAGTAGTCCAGTGTCATCCAAAAACAGCGTTCTGGGACTCCTCCAGCATTTTGCAGATCAGTTTCTGGATTCTGGATATAATGTGTTGATGCAGTCCGTGAGGGAGGACATCAGAAAAGAGCATCCTTCCATACAGACCAGTGATATTATTGTATTTTTTGAAGTTGCTCACTTTTTCATAGCATACCAGCGTTGCCGTGTCTCTAATTGTAAGGCAAAAACTGGTAGTGCTGAAATTAATGAATGCAACAAGGACGTCCATGACACTGTATACCGAGGTCTCATTTGTGCCCCTATTGCATCAACTATGAATGAACCCACATTCAACATGGTTATTTCTAAATGGCATTATGCTTTTGAAACTTTAAAGGAAACACATGACCTGAAGTCTTTGACAACAGCAGGAGCTCTGATAAAGGAGATGATTCACATGGTAGATCTTGTGCTTAAAATTTCCCGCAATGGTTCGAGAGAGAGAGAACATGAGGCTTGTACTGCACGGATACTTCTTTATAAAGTGTTCTATGATCAGACTGAGAATGGAATTTCTGTGTTTCTTCGGACACTCATAAAATCCTTCGATTATCATAAACAACCACGAAGTTACTTAGCAGATTTGGTGGAAATAACACATATCATGTTACGACTAATGGAAGCTCTCAAAGAAGCAGATGGTACTTTGAGGGTTCTCAGAAAAACTCAGAAAGGGAGGAAGAAGAAAAAGATGGATGATAGTCAACTAGATCCAGTTCAATATGGGGACAATAGTGGCTTGCAAGATGCCACTGAAGATGCGAGCAAAATGAAAGATTACCATGATGAAAAAGTAACAGATGGGACAGTGGA

Fln Alignment:

Contig287___MEIEGLSVVCAGLGCASQDADGKRNEYIKSENCLENLKDLQRFLRRDHPQTRDVFKQLGKWNTVSQDLIPIIEQYRNETELVMNTVKVIVFLTMPIDPSSDDISLQMEYLWSFKASFSCNDAIAVIVSXXXXXXXXXXXXSFTEDDWKVIQLVLTLFRNLLAIRDPSPQQMTGRSSSQFQFLRDGFLEHLFHENVMDLLLALTQHVAGSHGFLKQDNLLLLEIFHYIFSGQQPELVATVQQKILKSDTKSHQLSGTXXXXXXXXXXXXXXXXXXXXPRHSQFCGTFVRLAPDGSKRIVKRNPFITPAESILKTCQIKRGPIKRIACDTSSPVSSKNSVLGLLQHFADQFLDSGYNVLMQSVREDIRKEHPSIQTSDIIVFFEVAHFFIAYQRCRVSNCKAKTGSAEINE-CNKDVHDTVYRGLICAPIASTMNEPTFNMVISKWHYAFETLKETHDLKSLTTAGALIKEMIHMVDLVLKISRNGSREREHEACTARILLYKVFYDQTENGISVFLRTLIKSFDYHKQPRSY---LADLVEITHIMLRLMEALKEADGTLRVLRXXXXXXXXXXMDDSQLDPVQYGDNSGLQDATEDASKMKDYHDEKVTDG
I1NGZ9_____________MDTEGLSVICAGIGTIEVDDEGNVIGYIKGQYCLDNLKDLLRFLRRDDPQTRDVFKQVCKWNIVSKYLIPTIELYHEDSNLLLNAVKVLVFLTMPIEPSSTDISQQLEYLWGLKSALTNSDVAAVIVSFLERPLENLERGTFSEDDWKLVQLVLTLFRNILAVQEIPTHQKSGGLATQLLSMRDRFLELLFRENVMDIMLVISQCVGSSNVYLRQDNLLLLEIFHYILMGQDPELIVRAHLKESKEDEQPQTSLNSLQFILEEEKKRRNICKLNNLSRHSQFSGTFARLTMDGSKAVIKGNP-NSSHNVLLKAQNVTRGPTKRTVWDHPRLPSTEDKILELLHGFVNQFLSGGYNVLMRSIREDIEKEHPSIQKSDVVVFFQVAEFVTSFQCYKYSASKTTEGGDTFETFSHKDADTSDFSGQICGPIAASLNESMFQLVISKWRHAYDGLKETNDYQFLSAAGSLLKNMIRMLDLILKLLPEDSKEPQ----TARILLYKLFYDQTEEGMTQFLLNLIKTFDTHKQPKRYPIVVIYLVEIIHKVVKLMDNL-QSRGALRVSRKSRKVKKKIIPEGTESGDKLAGDHSFIQNETGISTVNQSAENQPLQEG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1130	12			87	0.992554
1133		12	75		0.975346
1134	85			14	0.993533
1136		83		16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1639	1650	GA GA GA GA GA GA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain