SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene220

Length: 2780 nt

UniGene Fasta

>sp_v3.0_unigene220
TGGACAATGCCTGGGTAAACACGATGATCGAAAATTTACAATTAATATGGAATTTTCAGAGCATTAAATGCCAGCCTTCTACTGTAGCAAACTCAAAGTTGAGTAAAGCTTGGTTTTCCAATCGAAAAGAAATTCTAATATTCTTGCTCCAGAAACCTCTCTCCCATATTTGAACCGGTTTTATTTGGATCTGCAAGTTCGAAGGACATTTGAGTCGTTCCGAAGGGATTTCAGTAATTCATCTGCCTTCAACTGAAATTGGCGGCGATATTCCAAGTGTGATAAGGCGCAAAAAGTCTAGTGAAAAGATGGGTTTGTACGTGGCTAGCTGACCTGTTTAATCTTGTTAATGTTTTCATCTAAATATGGGGTTTTCACTTTCCTCCATATTAGATGTGCAATCAGGGAAGGTGGTCGTGCTGGCTTTCACATTGATGATAGTTACTTTTTTTGCTGGAACATTATTTGGCACCAAGCATGTGATCTATATGCAAGCACCGTTGATATCAACTGGGAAGCAGTGGTTAAGTAACAAGGTGGCTCTCAAATTTAGAGCTGATGTGCAAAAGATACCTATAGAAGGAATGAATGTCTGCCCATTGAATTATACTGAGTATGTTCCTTGTCATGATTTAAAGTATATCGGCACTTTGAAAAATTTGAATTATTCTCGAAGAGAGAATTTCGAAAGAAATTGTCCTCCACTTGAGGAACTGCCTTTCTGTTTAATACCTCCTCCCAAGGAATACAAGATCCCAATAAAATGGCCAATCAGTAAAGATTATGTGTGGCGAAGCAATGTGAACCACTCACATCTAGCAGAAGTCAAAGGTGGGCAAAATTGGGTGCATGAGCGTGGTAAACTATGGTGGTTCCCTGGTGGTGGTACTCATTTCAAGCATGGAGCTTCAGAGTACATCCAAAGGTTGGGAAACATGATAACTAATGGAACAGGGGATTTACGAGCTGCAGGAGTGGTGCAAGTTCTTGATGTTGGCTGTGGTGTTGCAAGTTTTTCAGCTTATCTACTTCCACTGGGTATACAGACAATGTCATTTGCTCCAAAGGATGGGCATGAGAATCAGATTCAATTTGCTCTTGAACGAGGAATTGGTGCCATGATTGCAGTTCTTGGCACAACACAACTACCTTATCCAAGCAATTCATTTGAAATGGTCCATTGTTCACGTTGTCGTGTCGATTGGCATGAAAATGATGGTATCCTGCTGAAAGAAGTAGATCGCCTTTTGAGAGCTAGTGGTTACTTTGTTTATTCTGCACCTCCTTCTTACAGGAAGGATAAAGATTATCCCCATCAATGGGAGAAGTTGATGAATCTGACAGCTTCAATGTGTTGGAATCTTATTGCTCGTCAAGTTCAAACAGCAATTTGGTTCAAGCCAGGAGATAGGGCATGCCAACTAGAGAAAGCAAAATCCAAAAGCTTGGTTTTATGTGACCAGGCACATGATCCAGAACAATCATGGAAGAAACCATTACAGAATTGTCTAACTTTAAGTCCAGAAGCAGAGAACATTCAACAGCTTCCTCCATTGCCAGAGCGTTTATCAATCTTCCCTAAACGACTCGAGAAAATAGGGATTGCTGCTGAAAATTTTAGTGCAGACACAGCATTTTGGCAGAGGCAAGTCAGTGAATATTGGAAACTTATGAATGTCAGTAAATATGATATTCGAAATGTAATGGATATGAACTCTGTTTATGGCGGATTTGCTGCTGCTTTAAGCACAAAACCAGTTTGGGTGATGAATATAATTCCTCCAAGCTCAAGGAATACTTTACCTGCTATCTATGACAGAGGCTTGATTGGATCTTTTCATGACTGGTGTGAGCCATTTTCTACTTATCCACGTACATATGATTTGGTTCATGCATTCCGATTGTTTTCACACTACAGAGGCAATGGTAGAGGTTGCCAAATAGAAGACATTATTCTGGAGGTGGATCGCATTCTCCGCCCACTGGGCTTTTTCATCATCCGAGATGACTCAACCATCATCTCTGAAGTGGCAGATATTGCACCCAGGTTTCTCTGGGATGCAAAAGTATATAATTTGGAAGGTGTTGGAAACCAAGTAGAGCAACTGCTAATTTGCCAAAAGAAGTTCTGGATAACAGTGTAATCTTTATGTTTTTGAGTTGTGCCGATTACACGTCTAAATGTGTGAATTATATTCAATATTTTTTGAACAAAGCCAGTATTGACTCATAGTCTGAGCTTTTTAAATGTAACAAAGCCGTTTAGGATTGATGACAATGGATTTTTGTTCAGTAATCTTGCTGCAGTTCACAGCAATGCTCTGGTCTCTTTGCATGTTTCCATAACAAGGAAACAGATTAGTCAACAATATTAGTTCGATAGATGGTTCCACCCTTGTAGCACGAACGCACTTAAGTCTAGCCAGTGAGAATTGTCTGCAGGAATACAATATTTTGCACTTATATCGACTGGTTTAATGTTTTTCATCCAAAGCGATGACATGTGTATGCTTTACCAGGTTGGTAAAGAGCCCCATCTTTGGCGAGGATGTATTGAGCGTATGGGATGAGCCACGTATTGAGCATATGGGTTGAGTCTATGGGTGGTCAGAATTGTTTAAATTGCTCCAAATCTCTTGTAATATCAGAACTGTTTAAATTGCTCCAAATCTCTTGTAATATCAGAATTGTTTCAATTTTGACTAACCAAATCTCTTGTAATATAAGGCTACCGTTGTTGGTAGTATTTGGCTTTTAGAATATACATCACAACGATGGAG

Ace file of the UniGene sp_v3.0_unigene220

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative methyltransferase PMT6 [Arabidopsis thaliana] sp\|Q84TJ0.1\|PMT6_ARATH RecName: Full=Probable methyltransferase PMT6 gb\|AAO64151.1\| unknown protein [Arabidopsis thaliana] dbj\|BAF00512.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE74871.1\| pu	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G10200.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr3:3157618-3160016 FORWARD LENGTH=591	60%
RefSeq	Arabidopsis thaliana	NP_187631.2	putative methyltransferase PMT6 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002308906.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKR7

Fln msg:

Fln protein: MGFSLSSILDVQSGKVVVLAFTLMIVTFFAGTLFGTKHVIYMQAPLISTGKQWLSNKVALKFRADVQKIPIEGMNVCPLNYTEYVPCHDLKYIGTLKNLNYSRRENFERNCPPLEELPFCLIPPPKEYKIPIKWPISKDYVWRSNVNHSHLAEVKGGQNWVHERGKLWWFPGGGTHFKHGASEYIQRLGNMITNGTGDLRAAGVVQVLDVGCGVASFSAYLLPLGIQTMSFAPKDGHENQIQFALERGIGAMIAVLGTTQLPYPSNSFEMVHCSRCRVDWHENDGILLKEVDRLLRASGYFVYSAPPSYRKDKDYPHQWEKLMNLTASMCWNLIARQVQTAIWFKPGDRACQLEKAKSKSLVLCDQAHDPEQSWKKPLQNCLTLSPEAENIQQLPPLPERLSIFPKRLEKIGIAAENFSADTAFWQRQVSEYWKLMNVSKYDIRNVMDMNSVYGGFAAALSTKPVWVMNIIPPSSRNTLPAIYDRGLIGSFHDWCEPFSTYPRTYDLVHAFRLFSHYRGNGRGCQIEDIILEVDRILRPLGFFIIRDDSTIISEVADIAPRFLWDAKVYNLEGVGNQVEQLLICQKKFWITV*

Protein Length: 594

Fln nts: TGGACAATGCCTGGGTAAACACGATGATCGAAAATTTACAATTAATATGGAATTTTCAGAGCATTAAATGCCAGCCTTCTACTGTAGCAAACTCAAAGTTGAGTAAAGCTTGGTTTTCCAATCGAAAAGAAATTCTAATATTCTTGCTCCAGAAACCTCTCTCCCATATTTGAACCGGTTTTATTTGGATCTGCAAGTTCGAAGGACATTTGAGTCGTTCCGAAGGGATTTCAGTAATTCATCTGCCTTCAACTGAAATTGGCGGCGATATTCCAAGTGTGATAAGGCGCAAAAAGTCTAGTGAAAAGATGGGTTTGTACGTGGCTAGCTGACCTGTTTAATCTTGTTAATGTTTTCATCTAAAT_-_ATGGGGTTTTCACTTTCCTCCATATTAGATGTGCAATCAGGGAAGGTGGTCGTGCTGGCTTTCACATTGATGATAGTTACTTTTTTTGCTGGAACATTATTTGGCACCAAGCATGTGATCTATATGCAAGCACCGTTGATATCAACTGGGAAGCAGTGGTTAAGTAACAAGGTGGCTCTCAAATTTAGAGCTGATGTGCAAAAGATACCTATAGAAGGAATGAATGTCTGCCCATTGAATTATACTGAGTATGTTCCTTGTCATGATTTAAAGTATATCGGCACTTTGAAAAATTTGAATTATTCTCGAAGAGAGAATTTCGAAAGAAATTGTCCTCCACTTGAGGAACTGCCTTTCTGTTTAATACCTCCTCCCAAGGAATACAAGATCCCAATAAAATGGCCAATCAGTAAAGATTATGTGTGGCGAAGCAATGTGAACCACTCACATCTAGCAGAAGTCAAAGGTGGGCAAAATTGGGTGCATGAGCGTGGTAAACTATGGTGGTTCCCTGGTGGTGGTACTCATTTCAAGCATGGAGCTTCAGAGTACATCCAAAGGTTGGGAAACATGATAACTAATGGAACAGGGGATTTACGAGCTGCAGGAGTGGTGCAAGTTCTTGATGTTGGCTGTGGTGTTGCAAGTTTTTCAGCTTATCTACTTCCACTGGGTATACAGACAATGTCATTTGCTCCAAAGGATGGGCATGAGAATCAGATTCAATTTGCTCTTGAACGAGGAATTGGTGCCATGATTGCAGTTCTTGGCACAACACAACTACCTTATCCAAGCAATTCATTTGAAATGGTCCATTGTTCACGTTGTCGTGTCGATTGGCATGAAAATGATGGTATCCTGCTGAAAGAAGTAGATCGCCTTTTGAGAGCTAGTGGTTACTTTGTTTATTCTGCACCTCCTTCTTACAGGAAGGATAAAGATTATCCCCATCAATGGGAGAAGTTGATGAATCTGACAGCTTCAATGTGTTGGAATCTTATTGCTCGTCAAGTTCAAACAGCAATTTGGTTCAAGCCAGGAGATAGGGCATGCCAACTAGAGAAAGCAAAATCCAAAAGCTTGGTTTTATGTGACCAGGCACATGATCCAGAACAATCATGGAAGAAACCATTACAGAATTGTCTAACTTTAAGTCCAGAAGCAGAGAACATTCAACAGCTTCCTCCATTGCCAGAGCGTTTATCAATCTTCCCTAAACGACTCGAGAAAATAGGGATTGCTGCTGAAAATTTTAGTGCAGACACAGCATTTTGGCAGAGGCAAGTCAGTGAATATTGGAAACTTATGAATGTCAGTAAATATGATATTCGAAATGTAATGGATATGAACTCTGTTTATGGCGGATTTGCTGCTGCTTTAAGCACAAAACCAGTTTGGGTGATGAATATAATTCCTCCAAGCTCAAGGAATACTTTACCTGCTATCTATGACAGAGGCTTGATTGGATCTTTTCATGACTGGTGTGAGCCATTTTCTACTTATCCACGTACATATGATTTGGTTCATGCATTCCGATTGTTTTCACACTACAGAGGCAATGGTAGAGGTTGCCAAATAGAAGACATTATTCTGGAGGTGGATCGCATTCTCCGCCCACTGGGCTTTTTCATCATCCGAGATGACTCAACCATCATCTCTGAAGTGGCAGATATTGCACCCAGGTTTCTCTGGGATGCAAAAGTATATAATTTGGAAGGTGTTGGAAACCAAGTAGAGCAACTGCTAATTTGCCAAAAGAAGTTCTGGATAACAGTGTAA___TCTTTATGTTTTTGAGTTGTGCCGATTACACGTCTAAATGTGTGAATTATATTCAATATTTTTTGAACAAAGCCAGTATTGACTCATAGTCTGAGCTTTTTAAATGTAACAAAGCCGTTTAGGATTGATGACAATGGATTTTTGTTCAGTAATCTTGCTGCAGTTCACAGCAATGCTCTGGTCTCTTTGCATGTTTCCATAACAAGGAAACAGATTAGTCAACAATATTAGTTCGATAGATGGTTCCACCCTTGTAGCACGAACGCACTTAAGTCTAGCCAGTGAGAATTGTCTGCAGGAATACAATATTTTGCACTTATATCGACTGGTTTAATGTTTTTCATCCAAAGCGATGACATGTGTATGCTTTACCAGGTTGGTAAAGAGCCCCATCTTTGGCGAGGATGTATTGAGCGTATGGGATGAGCCACGTATTGAGCATATGGGTTGAGTCTATGGGTGGTCAGAATTGTTTAAATTGCTCCAAATCTCTTGTAATATCAGAACTGTTTAAATTGCTCCAAATCTCTTGTAATATCAGAATTGTTTCAATTTTGACTAACCAAATCTCTTGTAATATAAGGCTACCGTTGTTGGTAGTATTTGGCTTTTAGAATATACATCACAACGATGGAG

Fln Alignment:

Contig220___MGFSLSSILDVQSGKVVVLAFTLMIVTFFAGTLFGTKHVIYMQAPLISTGKQWLSNKVALKFRADVQKIPIEGMNVCPLNYTEYVPCHDLKYIGTLKNLNYSRRENFERNCPPLEELPFCLXXXXXXXXXXXXXXXSKDYVWRSNVNHSHLAEVKGGQNWVHERGKLWWFPGGGTHFKHGASEYIQRLGNMITNGTGDLRAAGVVQVLDVGCGVASFSAYLLPLGIQTMSFAPKDGHENQIQFALERGIGAMIAVLGTTQLPYPSNSFEMVHCSRCRVDWHENDGILLKEVDRLLRASGYFVYSAPPSYRKDKDYPHQWEKLMNLTASMCWNLIARQVQTAIWFKPGDRACQLEKAKSKSLVLCDQAHDPEQSWKKPLQNCLTLSPEAENIQQLPPLPERLSIFPKRLEKIGIAAENFSADTAFWQRQVSEYWKLMNVSKYDIRNVMDMNSVYGGFAAALSTKPVWVMNIIPPSSRNTLPAIYDRGLIGSFHDWCEPFSTYPRTYDLVHAFRLFSHYRGNGRGCQIEDIILEVDRILRPLGFFIIRDDSTIISEVADIAPRFLWDAKVYNLEGVGNQVEQLLICQKKFWITV
B8LKR7_____________MGFSLSSMLDVQSGKVVVLAFTLMIVTFFAGTLFGTKHVIYMQEPLISTGKQWLSNKVVLNFRADVLKIPVEGMNVCPLNYTEYVPCHDLTYISTLKNLNYSRRENFERNCPPLEERPFCLIPPPKEYKIPIKWPISKDYVWRSNVNHSHLAEVKGGQNWVHEQGKLWWFPGGGTHFKHGALEYIQRLGNMITNETGDLRAAGVMQVLDVGCGVASFSAYLLTLGIQTMSFAPKDGHENQIQFALERGIGAMISVLGTTQLPYPSNSFEMVHCSRCRVDWHENDGILLKEVDRLLRASGYFVYSAPPAYRKDKDYPHQWEKLMNLTASMCWNLIARQVQTAIWFKPGERACQLEKAKSKSLVLCDQAHDPEQSWKKPLQNCLTLNPEAENIQQLPPLPERLSIFPKRLEKIGITAENFSADTAFWQRQVGEYWKLMNVSKYDIRNVMDMNSFYGGFAAALSTKPVWVMNIIPPSSRNTLPAIYDRGLIGSFHDWCEPFSTYPRTYDLIHAFRLFSHYRGDGKGCQIEDIILEVDRILRPLGFFIIRDDSTIISKVTDIAPKFLWDAKVYSLEGVGNQGEQLLICQKKFWITV

SNPs (tot: 3)

Position	C %	G %	T %	Probability
2491	90		10	0.90298
2500		88	11	0.923564
2600	12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain