SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene202

Length: 2058 nt

UniGene Fasta

>sp_v3.0_unigene202
ACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGACGAGGCATTCAGTGTAAATGGAGAACATAAAAGTTGGGTGAGCTAGAGGAAAGGAGGGAAGGGGAAAGCTGTAAACAGTTACAGTTCTTATTTCCTTTCCTTCCTGCAATACTTGCAGGAATACCCTGAACAAGAGTAGAAGAAGAGTACAGAAATGTCGGACCTAGACAGACAAATAGAGCAACTGAAGCGATGCGAGCCTTTGAAGGAATCGGAAGTGAAGTCCCTCTGTGTGAAGGCCATGGAGATCCTGGTCGAGGAGAGCAATGTCCAAAGAGTTGACGCTCCCGTCACTATTTGTGGAGACATCCATGGGCAATTTTATGATATGAAAGAGCTGTTTAAAGTGGGGGGAGATTGTCCGCAGACCAATTATTTGTTTTTAGGCGACTTTGTTGACAGGGGTTTTTACTCTGTGGAGACTTTCTTGCTGCTTCTTGCGTTGAAGGTTCGATATCCTGATCGAATCACACTTATCCGGGGAAATCATGAGAGCCGGCAGATTACACAGGTATACGGATTCTATGATGAATGCCTTCGGAAGTATGGATCAGTAAATGTGTGGCGGTATTGCACAGATATATTTGACTACTTGAGTTTATCTGCACTTATTGAGAACCGTATCTTTAGTGTGCATGGCGGTCTTTCTCCTGCGATATCAAATTTAGATCAGATTAGAACAATTGATAGAAAGCAGGAAGTGCCTCATGATGGTGCTATGTGTGACCTTCTTTGGTCAGATCCAGAAGACATTGTTGATGGTTGGGGTCTAAGTCCAAGAGGTGCTGGATTTCTCTTTGGAGGAAATGTTGTCTCTACATTCAATCATACCAATAAGATTGATTTCATTTGCCGTGCTCACCAGCTGGTCATGGAAGGATATAAATGGATGTTCAATAATCAGATAGTGACAGTTTGGTCAGCTCCAAATTATTGTTACAGATGTGGCAATGTTGCTGCAATATTGGAGTTAGACGAAAACCTTAATAAGAAGTTTACTGTCTTTGAAGCAGCCTCTCAGGAAGCCAGGGGCATTCCTTCAAAAAAACCAGCACCAGATTACTTTCTTTAGATTCAAACACTGAATCTGTTTTGCATCCAGTGCACTAATATGATCATATGTAACTGCTTTGGTACCCTGAAATTGAAAGGGGGCCGTATATCTTGCAAGTTGGCATCATACTGAGTACCTGGCAGGTGAATTTCTGAGGTCACTATTGCTATTTACAAAGTGAACTATGGACATTTCAACTCTCAGGGATAAATGTCTAGTATTCTTCATCCTAGGATGGTCATGGACGAGTAATGAATAGATTGTTGAGAGGGTTCTGGTATGTAATGCCTTGATAGCACAAAGGTTTTGGGTTATCTGTTGAGCCTTTGATTTTTATATAATACTTCGACTTTGTGTTCCTTGACAATGCACAGATGCTACAGGCACTGGAAACACACTTTTTGCAAGTTGAGGACTGTGGTGCAGTAGACAGATTGTTGCATTCGATGTCTAGTTACTCCTTTGGGAGTTTGTATTTAGTGTTTACTTAATCGTATGGAGAGGATTTGATATTTTGCCAAACGTCATTTTCTAGAGTCAATAAGCAAATTTATTGACACGAATATTTGTTGTAATGAATTCCGGATAAAAGCCTTTTTGGGGCTACAAGTATTTGATCTCATTGTTAATAAATAAGCACTCCATGTATTGAGAAGATCTGCTCACAATTTAATTAGTTTTGTTAACGTCAGTATCTGGTATGGTCCTTTATTGTGCAAGTTAGCCGCCGTTGAGAAATTGTCTGCCTGTGTATTAGATGATATGCCATGGCAAGCTGAACTGAAAGTTTGAGAATAGAGACTGGAAAAATCCAAATCTCAGTCACCTTCCTCCGGAGATATATTGTGTGCCAAACTCATCTTTCAAGCTGTAGAAAATTCTTGTACACGTGTTTTTAATCTCAGTGGGGCTATCATCCAATTTATTACATTATTTAGAATTCAATACCTAGGGTCATTTA

Ace file of the UniGene sp_v3.0_unigene202

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase n=2 Tax=Embryophyta RepID=A9TZL9_PHYPA	-	-	91%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Sma3	Predicted protein	-	-	-

Source	Gene names
Sma3	POPTRDRAFT_822885;

Source	InterPros	Term	Type	e value	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	0.0	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G55260.1	PPX2, PPX-2 protein phosphatase X 2 chr5:22416808-22418621 FORWARD LENGTH=305	91%
RefSeq	Arabidopsis thaliana	NP_200337.1	serine/threonine-protein phosphatase PP-X isozyme 2 [Arabidopsis thaliana]	91%
RefSeq	Populus trichocarpa	XP_002317353.1	predicted protein [Populus trichocarpa]	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNZ2

Fln msg:

Fln protein: MSDLDRQIEQLKRCEPLKESEVKSLCVKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPQTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENRIFSVHGGLSPAISNLDQIRTIDRKQEVPHDGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGNVVSTFNHTNKIDFICRAHQLVMEGYKWMFNNQIVTVWSAPNYCYRCGNVAAILELDENLNKKFTVFEAASQEARGIPSKKPAPDYFL*

Protein Length: 307

Fln nts: ACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGACGAGGCATTCAGTGTAAATGGAGAACATAAAAGTTGGGTGAGCTAGAGGAAAGGAGGGAAGGGGAAAGCTGTAAACAGTTACAGTTCTTATTTCCTTTCCTTCCTGCAATACTTGCAGGAATACCCTGAACAAGAGTAGAAGAAGAGTACAGAA_-_ATGTCGGACCTAGACAGACAAATAGAGCAACTGAAGCGATGCGAGCCTTTGAAGGAATCGGAAGTGAAGTCCCTCTGTGTGAAGGCCATGGAGATCCTGGTCGAGGAGAGCAATGTCCAAAGAGTTGACGCTCCCGTCACTATTTGTGGAGACATCCATGGGCAATTTTATGATATGAAAGAGCTGTTTAAAGTGGGGGGAGATTGTCCGCAGACCAATTATTTGTTTTTAGGCGACTTTGTTGACAGGGGTTTTTACTCTGTGGAGACTTTCTTGCTGCTTCTTGCGTTGAAGGTTCGATATCCTGATCGAATCACACTTATCCGGGGAAATCATGAGAGCCGGCAGATTACACAGGTATACGGATTCTATGATGAATGCCTTCGGAAGTATGGATCAGTAAATGTGTGGCGGTATTGCACAGATATATTTGACTACTTGAGTTTATCTGCACTTATTGAGAACCGTATCTTTAGTGTGCATGGCGGTCTTTCTCCTGCGATATCAAATTTAGATCAGATTAGAACAATTGATAGAAAGCAGGAAGTGCCTCATGATGGTGCTATGTGTGACCTTCTTTGGTCAGATCCAGAAGACATTGTTGATGGTTGGGGTCTAAGTCCAAGAGGTGCTGGATTTCTCTTTGGAGGAAATGTTGTCTCTACATTCAATCATACCAATAAGATTGATTTCATTTGCCGTGCTCACCAGCTGGTCATGGAAGGATATAAATGGATGTTCAATAATCAGATAGTGACAGTTTGGTCAGCTCCAAATTATTGTTACAGATGTGGCAATGTTGCTGCAATATTGGAGTTAGACGAAAACCTTAATAAGAAGTTTACTGTCTTTGAAGCAGCCTCTCAGGAAGCCAGGGGCATTCCTTCAAAAAAACCAGCACCAGATTACTTTCTTTAG___ATTCAAACACTGAATCTGTTTTGCATCCAGTGCACTAATATGATCATATGTAACTGCTTTGGTACCCTGAAATTGAAAGGGGGCCGTATATCTTGCAAGTTGGCATCATACTGAGTACCTGGCAGGTGAATTTCTGAGGTCACTATTGCTATTTACAAAGTGAACTATGGACATTTCAACTCTCAGGGATAAATGTCTAGTATTCTTCATCCTAGGATGGTCATGGACGAGTAATGAATAGATTGTTGAGAGGGTTCTGGTATGTAATGCCTTGATAGCACAAAGGTTTTGGGTTATCTGTTGAGCCTTTGATTTTTATATAATACTTCGACTTTGTGTTCCTTGACAATGCACAGATGCTACAGGCACTGGAAACACACTTTTTGCAAGTTGAGGACTGTGGTGCAGTAGACAGATTGTTGCATTCGATGTCTAGTTACTCCTTTGGGAGTTTGTATTTAGTGTTTACTTAATCGTATGGAGAGGATTTGATATTTTGCCAAACGTCATTTTCTAGAGTCAATAAGCAAATTTATTGACACGAATATTTGTTGTAATGAATTCCGGATAAAAGCCTTTTTGGGGCTACAAGTATTTGATCTCATTGTTAATAAATAAGCACTCCATGTATTGAGAAGATCTGCTCACAATTTAATTAGTTTTGTTAACGTCAGTATCTGGTATGGTCCTTTATTGTGCAAGTTAGCCGCCGTTGAGAAATTGTCTGCCTGTGTATTAGATGATATGCCATGGCAAGCTGAACTGAAAGTTTGAGAATAGAGACTGGAAAAATCCAAATCTCAGTCACCTTCCTCCGGAGATATATTGTGTGCCAAACTCATCTTTCAAGCTGTAGAAAATTCTTGTACACGTGTTTTTAATCTCAGTGGGGCTATCATCCAATTTATTACATTATTTAGAATTCAATACCTAGGGTCATTTA

Fln Alignment:

Contig202___DLDRQIEQLKRCEPLKESEVKSLCVKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPQTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENRIFSVHGGLSPAISNLDQIRTIDRKQEVPHDGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGNVVSTFNHTNKIDFICRAHQLVMEGYKWMFNNQIVTVWSAPNYCYRCGNVAAILELDENLNKKFTVFEAASQEARGIPSKKPAPDYFL
A9NNZ2_____________DLDRQIEQLLECKPLSEPEVKGLCDQARAVLVEEWNVQPVKCPVTVCGDIHGQFHDLIELFRIGGKAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRC-GWGISPRGAGYTFGQDIAAQFNHKNGLNLVARAHQLVMEGFNWCQGNNVVTVFSAPNYCYRCGNMAAIMEISETMEQNFIQFEPAPRQIEPDMTRK-TPDYFL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
246		16		83	0.994512
272		88	11		0.923564
326		87		12	0.992554
350	11	88			0.923564
391			12	87	0.992554
392			87	12	0.992554
460		10		90	0.90298
1079		13		86	0.999973
1091	72	9			0.999994
1308	20			80	0.995493
1429	11			88	0.923564
1430		11		88	0.923564
1431	11			88	0.923564
1454		8	91		0.999766
1591		70		30	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain