SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene169

Length: 1954 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene169
GAGAAGGGGATCAGCTGCACATGGCTATGATGTTGTACCAAGGAGAGGGCAGCTGGGGAGTAGACAGCTGCGGCAATTCAGTGCAAGCATAAAAGTATTGGCTGGGAGATTATCCGTAGCCCTGGTGGTGTTGATAATCTGCACTATATCTCTCTTTTTTCGCCTCAGGGAAGACAGGATTGCCACTCAATCCCTGATTGATGTGGACAGACTTTGGTCTAGTGCTCCGTCTAATGGCTGGCGGCCGTCATCTGCACCAAGATCATACTGGCCTTCACCACCAAATGAGAGCAATGGCTATTTAGTGGTTCGATGCAATGGTGGTTTAAATCAACAACGTAGCGCGATATGCAATGCTGTGCTTGCTGCAAGAATAATGAATGCTACTCTTGTTTTGCCGGAGCTGGATACGAATTCCTTTTGGCATGATAAGAGTGGCTTTGCAGGTATTTATGATGTTAATCACTTCATCAAATCACTTAAATATGATGTAAAAGTTGTGCGGAGTTTGCCAGAAGTGTCAGTGAATGGGAAGAAGAAAAAATTGAAGGCTTTCCAGCTTCGCCCTCCAAGAGATGCTCCTCCAAGTTGGTATGAAACAGTTGCATTGGAGAAGTTGAAGGAACATGGTGCTATATATCTAACTCCATTTTCACATCGTTTAGCAGAAGAGATAGATAATGCGGAATATCAGCGATTAAGATGCAGAGTGAACTATCATGCTCTTAGATTCAAAGAAAATGTTATGAAACTGAGCTCTAACATTGTCAGTCGACTCCGTTCACAAGGCCATTTCATGGCAATACACCTTCGCTTCGAAATGGACATGCTTGCATTTGCTGGGTGCTTGGATATCTTTACTCCAGAGGAGCAGATTATTTTAAAGAAGTACAGGGAACAGAATTTTGCAGAGAAGAGGCTTGTGTATAATGAAAGGAGAATTATTGGGAAGTGTCCTTTAACTCCAGAAGAGGTTGGCCTTATCCTTCATGCTATGGGATTTGGTAACTCCACTCGTATATATCTGGCTGCTGGTGAAATTTTTGGTGGTGAGCGCTTCATGAAACCCTTGCGTACTCTATTCCCTAGCCTTGAGAATAGGAGCACTGTGGCTTCTACAGAGGATTTGGCAGCAGTGACTGCAGATGGAAGAGGATTGCTAGGTCCAGCAGTGGATTACATGGTCAGCCTTCTATCAGATATATTCATGCCAACATATGATGGGCCAAGCAACTTTGCCAATAACCTAATGGGACATCGTCTGTACTATGGTTTTCGGTCCACTATTCAACCTGACAGAAAAGCATTAGCACCTATATTTATAGACCGTGAGAGGTCTCATTCTCAAAATTTTGAAGCTTCAGTAAGGATGATTATGCAGAAGACACCATTTGGTGGTCCACACAAGAGGGTTCATCCTGAGTCATTTTATACAAATCCATGGCCTGAATGCTTCTGCCAAACTTCTCCTGAGACAGATGAGCACAGATGTCCTTCAGGAAATGTCATGGAAGTACTTAACAGTCAATTATCATCTGATATAAGTGGGATGGATGAATCTTCCACTGGCAATGCCCGGACTCATTCATTTAATAGTAAACAAAGCAAACTAGGTGATGAAAATATTTGAATTGTAGCAAAGTATTTTGGGCATCTGTAACATAGGTCATTGTAAGCAGTGATATTTGTATGAAAAATGATGCAATGCTTCAGGATTTTCAGTAATACGAGGATGCACATTGCAATGTCTAACCAGTTCAGCATTACACAAATTCTTTGCAGTCTTTGTATACTGTTAGTGACCGGCCCCTTGTAGTCCTCTACGTGTAAGGCTAGGTTCTCAATATATCAATCATGGTGTGTAGGGGTTTTTTGATGATAAGCAAATTTTCTCTGATATTAAGATTGCTTTATTCTGTACACAGCATTGTTCTAAAGTTATCAAAATTGTTTA

Ace file of the UniGene sp_v3.0_unigene169 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	O-fucosyltransferase-like protein [Arabidopsis thaliana] sp\|Q8W486.1\|Y1491_ARATH RecName: Full=DUF246 domain-containing protein At1g04910 gb\|AAL32840.1\| Similar to auxin-independent growth promoter (axi 1) [Arabidopsis thaliana] gb\|AAP68319.1\| At1g04910 [	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Sma3	Growth regulator like protein	-	-	9.18e-16	-

Source	Gene names
Sma3	AT4g16650; At1g04910; At2g03280; At4g16650; At5g15740; F13M7.10; F14F8_120; GSVIVT00002377001; GSVIVT00036211001; GSVIVT00038841001; LOC_Os11g29120; LOC_Os12g23760; OJ1276_B06.20; OSIGBa0122F23.8; OSJNBa0010H02.2; OSJNBb0034G17.19; Os01g0168600; Os06g0502

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	FAS1 domain	IPR000782	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3		IPR004348	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G04910.1	O-fucosyltransferase family protein chr1:1388101-1391074 REVERSE LENGTH=519	70%
RefSeq	Arabidopsis thaliana	NP_171983.2	O-fucosyltransferase-like protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002328895.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ81

Fln msg: your sequence is shorter than subject: 543 - 634

Fln protein: RRGSAAHGYDVVPRRGQLGSRQLRQFSASIKVLAGRLSVALVVLIICTISLFFRLREDRIATQSLIDVDRLWSSAPSNGWRPSSAPRSYWPSPPNESNGYLVVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDTNSFWHDKSGFAGIYDVNHFIKSLKYDVKVVRSLPEVSVNGKKKKLKAFQLRPPRDAPPSWYETVALEKLKEHGAIYLTPFSHRLAEEIDNAEYQRLRCRVNYHALRFKENVMKLSSNIVSRLRSQGHFMAIHLRFEMDMLAFAGCLDIFTPEEQIILKKYREQNFAEKRLVYNERRIIGKCPLTPEEVGLILHAMGFGNSTRIYLAAGEIFGGERFMKPLRTLFPSLENRSTVASTEDLAAVTADGRGLLGPAVDYMVSLLSDIFMPTYDGPSNFANNLMGHRLYYGFRSTIQPDRKALAPIFIDRERSHSQNFEASVRMIMQKTPFGGPHKRVHPESFYTNPWPECFCQTSPETDEHRCPSGNVMEVLNSQLSSDISGMDESSTGNARTHSFNSKQSKLGDENI*

Protein Length: 544

Fln nts: GAGAAGGGGATCAGCTGCACATGGCTATGATGTTGTACCAAGGAGAGGGCAGCTGGGGAGTAGACAGCTGCGGCAATTCAGTGCAAGCATAAAAGTATTGGCTGGGAGATTATCCGTAGCCCTGGTGGTGTTGATAATCTGCACTATATCTCTCTTTTTTCGCCTCAGGGAAGACAGGATTGCCACTCAATCCCTGATTGATGTGGACAGACTTTGGTCTAGTGCTCCGTCTAATGGCTGGCGGCCGTCATCTGCACCAAGATCATACTGGCCTTCACCACCAAATGAGAGCAATGGCTATTTAGTGGTTCGATGCAATGGTGGTTTAAATCAACAACGTAGCGCGATATGCAATGCTGTGCTTGCTGCAAGAATAATGAATGCTACTCTTGTTTTGCCGGAGCTGGATACGAATTCCTTTTGGCATGATAAGAGTGGCTTTGCAGGTATTTATGATGTTAATCACTTCATCAAATCACTTAAATATGATGTAAAAGTTGTGCGGAGTTTGCCAGAAGTGTCAGTGAATGGGAAGAAGAAAAAATTGAAGGCTTTCCAGCTTCGCCCTCCAAGAGATGCTCCTCCAAGTTGGTATGAAACAGTTGCATTGGAGAAGTTGAAGGAACATGGTGCTATATATCTAACTCCATTTTCACATCGTTTAGCAGAAGAGATAGATAATGCGGAATATCAGCGATTAAGATGCAGAGTGAACTATCATGCTCTTAGATTCAAAGAAAATGTTATGAAACTGAGCTCTAACATTGTCAGTCGACTCCGTTCACAAGGCCATTTCATGGCAATACACCTTCGCTTCGAAATGGACATGCTTGCATTTGCTGGGTGCTTGGATATCTTTACTCCAGAGGAGCAGATTATTTTAAAGAAGTACAGGGAACAGAATTTTGCAGAGAAGAGGCTTGTGTATAATGAAAGGAGAATTATTGGGAAGTGTCCTTTAACTCCAGAAGAGGTTGGCCTTATCCTTCATGCTATGGGATTTGGTAACTCCACTCGTATATATCTGGCTGCTGGTGAAATTTTTGGTGGTGAGCGCTTCATGAAACCCTTGCGTACTCTATTCCCTAGCCTTGAGAATAGGAGCACTGTGGCTTCTACAGAGGATTTGGCAGCAGTGACTGCAGATGGAAGAGGATTGCTAGGTCCAGCAGTGGATTACATGGTCAGCCTTCTATCAGATATATTCATGCCAACATATGATGGGCCAAGCAACTTTGCCAATAACCTAATGGGACATCGTCTGTACTATGGTTTTCGGTCCACTATTCAACCTGACAGAAAAGCATTAGCACCTATATTTATAGACCGTGAGAGGTCTCATTCTCAAAATTTTGAAGCTTCAGTAAGGATGATTATGCAGAAGACACCATTTGGTGGTCCACACAAGAGGGTTCATCCTGAGTCATTTTATACAAATCCATGGCCTGAATGCTTCTGCCAAACTTCTCCTGAGACAGATGAGCACAGATGTCCTTCAGGAAATGTCATGGAAGTACTTAACAGTCAATTATCATCTGATATAAGTGGGATGGATGAATCTTCCACTGGCAATGCCCGGACTCATTCATTTAATAGTAAACAAAGCAAACTAGGTGATGAAAATATTTGA___ATTGTAGCAAAGTATTTTGGGCATCTGTAACATAGGTCATTGTAAGCAGTGATATTTGTATGAAAAATGATGCAATGCTTCAGGATTTTCAGTAATACGAGGATGCACATTGCAATGTCTAACCAGTTCAGCATTACACAAATTCTTTGCAGTCTTTGTATACTGTTAGTGACCGGCCCCTTGTAGTCCTCTACGTGTAAGGCTAGGTTCTCAATATATCAATCATGGTGTGTAGGGGTTTTTTGATGATAAGCAAATTTTCTCTGATATTAAGATTGCTTTATTCTGTACACAGCATTGTTCTAAAGTTATCAAAATTGTTTA

Fln Alignment:

Contig169___SNGYLVVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDTNSFWHDKSGFAGIYDVNHFIKSLKYDVKVVRSLPEVSVNGKKKKLKAFQLRPPRDAPPSWYETVALEKLKEHGAIYLTPFSHRLAEEIDNAEYQRLRCRVNYHALRFKENVMKLSSNIVSRLRSQGH-FMAIHLRFEMDMLAFAGCLDIFT--PEEQIILKKYREQNFAEKRLVYNERRIIGKCPLTPEEVGLILHAMGFGNSTRIYLAAGEIFGGERFMKPLRTLFPSLENRSTVASTEDLAAVTADGRGLLGPAVDYMVSLLSDIFMPTYDGPSNFANNLMGHRLYYGFRSTIQPDRKALAPIFIDRERSH-SQNFEASVRMIMQKTPFGGPHKRVH------PESFYTNPWPECFCQ
B8LQ81_____________TNGFLLVHANGGLNQMRTGICDMVAVARIMNATLVLPSLDHSSFWTDPSDFEDIFDWHHFTKTLREDVRIVKSLP-----ASYAKIEPLQKAPISWSKHTYYKDEMLPLLKKQKVIHFTHTDSRLANNGLPNSIQKLRCRTNYQALRYTQSIEELGKKLVARMRKNGKPYIALHLRYEKDMLAFTGCAHNLTLGEAEELREMRYNVKHWKEKDIDAEEKRKQGGCPLTPRETALLLKALGYLPTTNIYIAAGEIYGNGS-MRALQNEFPNVFSHSTLATEEELEPFKNYQNRL--AALDYILALESDVFLYTYDG--NMAKAVQGHRRFEGFRKTINPDRENLIKLIDEMDQGQISWNSFASKVKATHSNRVGAPYLREAGDFPRLEENFYANPFPGCICE

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
611	83			16	0.994512
614	83	16			0.994512
615	16			83	0.994512
617	83	16			0.994512
618		16	83		0.994512
620	16	83			0.994512
621		83	16		0.994512
624	16			83	0.994512
731	20	80			0.995493
801		80	20		0.995493
802		80		20	0.995493
824	16			83	0.994512
1147			85	14	0.993533
1162	85		14		0.993533
1239		40		60	1.0
1240	60	40			1.0
1241		40	60		1.0
1242	40			60	1.0
1455	16	83			0.994512
1457		83	16		0.994512
1458	83			16	0.994512
1545		85		14	0.993533
1585		85		14	0.993533
1614	28		71		1.0
1816		80		20	0.995493
1883	25		75		0.996473
1885	25	75			0.996473
1886			75	25	0.996473
1887		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain